Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

27359109 .. 27361024

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAGTTCTTCAGAGAGTGTGGAAAACGAGTGCATGTGTTGGGCTGCAAGAGATCCATCTGGTCTTCTTTCTCCTCATACTATCACTCGCAGGTCTGTTACAACTGACGATGTTTCACTCACAATCACTCATTGTGGAGTGTGTTACGCTGATGTTATCTGGAGTAGAAACCAACATGGAGACTCCAAGTACCCTTTGGTTCCTGGGCATGAGATTGCTGGAATAGTGACTAAGGTTGGGCCTAATGTTCAACGATTCAAAGTTGGAGACCATGTTGGTGTTGGAACGTATGTTAACTCCTGCAGGGAGTGTGAATATTGTAATGAAGGACAAGAAGTTAATTGTGCGAAAGGAGTTTTTACTTTCAATGGCATTGATCATGATGGCTCTGTTACTAAAGGAGGCTACTCTAGTCACATTGTTGTTCATGAAAGGTACTGCTACAAGATACCTGTGGACTATCCCTTGGAATCAGCTGCACCATTACTCTGTGCTGGAATCACGGTTTATGCTCCTATGATGCGTCACAATATGAATCAACCTGGTAAATCTCTTGGGGTGATCGGGCTAGGTGGTCTTGGACACATGGCGGTTAAGTTTGGCAAGGCTTTTGGACTTAGTGTTACGGTTTTTAGCACCAGCATTTCCAAGAAAGAAGAAGCTTTGAATCTGCTAGGAGCTGAGAATTTCGTTATCTCATCTGACCATGACCAGATGAAGGCACTAGAGAAATCTCTAGACTTTCTAGTTGACACAGCATCTGGTGATCACGCGTTTGATCCTTACATGTCTCTCTTGAAGATTGCTGGAACTTATGTATTGGTTGGTTTCCCAAGTGAAATTAAAATCAGTCCTGCCAATCTCAATCTTGGTATGAGAATGCTCGCTGGAAGTGTAACCGGGGGGACCAAAATAACACAGCAAATGTTAGATTTCTGTGCAGCTCATAAGATTTATCCAAACATAGAGGTGATTCCCATTCAAAAGATAAACGAAGCTCTCGAAAGAGTGGTGAAGAAGGACATCAAGTACCGTTTCGTGATTGACATCAAGAACTCCCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

355

Amino Acids

38.67

Weight (kDa)

6.66

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 151	2.9e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	192 - 314	1.2e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccII	CGCG	1 cut(s)	773
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	2 cut(s)	47, 773
AcsI	RAATTY	1 cut(s)	685
AfaI	GTAC	3 cut(s)	191, 437, 1031
AfiI	CCNNNNNNNGG	1 cut(s)	718
AflIII	ACRYGT	2 cut(s)	771, 786
AgsI	TTSAA	6 cut(s)	251, 259, 367, 667, 799, 983
AjnI	CCWGG	2 cut(s)	202, 541
AluBI	AGCT	5 cut(s)	476, 662, 680, 944, 998
AluI	AGCT	5 cut(s)	476, 662, 680, 944, 998
Alw26I	GTCTC	3 cut(s)	174, 261, 795
AlwI	GGATC	2 cut(s)	47, 773
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	44, 476, 941
ApoI	RAATTY	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	239, 906
AsuC2I	CCSGG	1 cut(s)	901
AsuHPI	GGTGA	4 cut(s)	571, 776, 982, 1024
AvaII	GGWCC	1 cut(s)	906
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	31, 463, 953
BccI	CCATC	2 cut(s)	64, 377
BciT130I	CCWGG	2 cut(s)	204, 543
BclI	TGATCA	2 cut(s)	376, 766
BcnI	CCSGG	1 cut(s)	901
BcoDI	GTCTC	3 cut(s)	174, 261, 795
BfaI	CTAG	6 cut(s)	411, 569, 674, 725, 737, 746
BfmI	CTRYAG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	45, 477, 942
BlsI	GCNGC	3 cut(s)	46, 478, 943
Bme1390I	CCNGG	3 cut(s)	204, 543, 901
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	2 cut(s)	239, 906
BmiI	GGNNCC	2 cut(s)	201, 907
BmrFI	CCNGG	3 cut(s)	204, 543, 901
BmsI	GCATC	2 cut(s)	510, 767
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	901
BsaBI	GATNNNNATC	1 cut(s)	1046
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	203, 465, 900
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	1046
BseBI	CCWGG	2 cut(s)	204, 543
BseDI	CCNNGG	3 cut(s)	203, 465, 900
BseJI	GATNNNNATC	1 cut(s)	1046
BseLI	CCNNNNNNNGG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	672
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	31, 463, 953
BsgI	GTGCAG	2 cut(s)	462, 960
Bsh1236I	CGCG	1 cut(s)	773
BshFI	GGCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	1 cut(s)	919
BslI	CCNNNNNNNGG	1 cut(s)	718
BsmAI	GTCTC	3 cut(s)	174, 261, 795
BsmFI	GGGAC	1 cut(s)	919
BsmI	GAATGC	1 cut(s)	885
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	52, 376, 561, 766, 778
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	673
BspFNI	CGCG	1 cut(s)	773
BspHI	TCATGA	2 cut(s)	379, 427
BspLI	GGNNCC	2 cut(s)	201, 907
BspMAI	CTGCAG	1 cut(s)	305
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	2 cut(s)	47, 773
BspTNI	GGTCTC	1 cut(s)	261
BssECI	CCNNGG	3 cut(s)	203, 465, 900
BssMI	GATC	5 cut(s)	52, 376, 561, 766, 778
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	204, 543
Bst4CI	ACNGT	3 cut(s)	505, 628, 1034
BstC8I	GCNNGC	1 cut(s)	885
BstDEI	CTNAG	3 cut(s)	231, 617, 681
BstFNI	CGCG	1 cut(s)	773
BstKTI	GATC	5 cut(s)	55, 379, 564, 769, 781
BstMAI	GTCTC	3 cut(s)	174, 261, 795
BstMBI	GATC	5 cut(s)	52, 376, 561, 766, 778
BstNI	CCWGG	2 cut(s)	204, 543
BstNSI	RCATGY	2 cut(s)	37, 790
BstSCI	CCNGG	3 cut(s)	202, 541, 899
BstSFI	CTRYAG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	3 cut(s)	31, 463, 953
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	885
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	2 cut(s)	379, 427
Cfr13I	GGNCC	2 cut(s)	239, 906
CseI	GACGC	1 cut(s)	512
CsiI	ACCWGGT	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	190, 436, 1030
CviAII	CATG	9 cut(s)	34, 176, 209, 272, 380, 428, 586, 707, 787
CviQI	GTAC	3 cut(s)	190, 436, 1030
DdeI	CTNAG	3 cut(s)	231, 617, 681
DpnI	GATC	5 cut(s)	54, 378, 563, 768, 780
DpnII	GATC	5 cut(s)	52, 376, 561, 766, 778
Eco130I	CCWWGG	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	202, 541
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	9 cut(s)	37, 179, 212, 275, 383, 431, 589, 710, 790
FaqI	GGGAC	1 cut(s)	919
FatI	CATG	9 cut(s)	33, 175, 208, 271, 379, 427, 585, 706, 786
FbaI	TGATCA	2 cut(s)	376, 766
Fnu4HI	GCNGC	3 cut(s)	45, 477, 942
Fsp4HI	GCNGC	3 cut(s)	45, 477, 942
FspBI	CTAG	6 cut(s)	411, 569, 674, 725, 737, 746
GluI	GCNGC	3 cut(s)	45, 477, 942
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	900
HgaI	GACGC	1 cut(s)	512
Hin1II	CATG	9 cut(s)	37, 179, 212, 275, 383, 431, 589, 710, 790
HincII	GTYRAC	2 cut(s)	295, 751
HindII	GTYRAC	2 cut(s)	295, 751
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	7 cut(s)	182, 255, 470, 498, 535, 667, 973
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	4 cut(s)	571, 776, 982, 1024
Hpy166II	GTNNAC	3 cut(s)	295, 457, 751
Hpy188I	TCNGA	2 cut(s)	13, 703
Hpy188III	TCNNGA	8 cut(s)	160, 380, 428, 737, 796, 1001, 1039, 1051
Hpy8I	GTNNAC	3 cut(s)	295, 457, 751
HpyAV	CCTTC	3 cut(s)	320, 712, 1012
HpyCH4III	ACNGT	3 cut(s)	505, 628, 1034
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	33, 47, 303, 479, 941
HpyF3I	CTNAG	3 cut(s)	231, 617, 681
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	9 cut(s)	37, 179, 212, 275, 383, 431, 589, 710, 790
Ksp22I	TGATCA	2 cut(s)	376, 766
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	52, 376, 561, 766, 778
LmnI	GCTCC	2 cut(s)	517, 677
Lsp1109I	GCAGC	3 cut(s)	31, 463, 953
LweI	GCATC	2 cut(s)	510, 767
MabI	ACCWGGT	1 cut(s)	541
MaeI	CTAG	6 cut(s)	411, 569, 674, 725, 737, 746
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	8 cut(s)	97, 143, 226, 391, 413, 524, 622, 895
MalI	GATC	5 cut(s)	54, 378, 563, 768, 780
MboI	GATC	5 cut(s)	52, 376, 561, 766, 778
MboII	GAAGA	4 cut(s)	56, 668, 811, 1027
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	340, 685, 840
MluI	ACGCGT	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	244, 262
MnlI	CCTC	3 cut(s)	84, 395, 961
MseI	TTAA	4 cut(s)	294, 339, 594, 843
MslI	CAYNNNNRTG	2 cut(s)	276, 968
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	3 cut(s)	204, 543, 901
Mva1269I	GAATGC	1 cut(s)	885
MvaI	CCWGG	2 cut(s)	204, 543
MvnI	CGCG	1 cut(s)	773
NciI	CCSGG	1 cut(s)	901
NdeII	GATC	5 cut(s)	52, 376, 561, 766, 778
NlaIII	CATG	9 cut(s)	37, 179, 212, 275, 383, 431, 589, 710, 790
NlaIV	GGNNCC	2 cut(s)	201, 907
NmuCI	GTSAC	3 cut(s)	226, 413, 524
NspI	RCATGY	2 cut(s)	37, 790
PagI	TCATGA	2 cut(s)	379, 427
PciI	ACATGT	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PctI	GAATGC	1 cut(s)	885
PfeI	GAWTC	6 cut(s)	255, 470, 498, 535, 667, 973
PkrI	GCNGC	3 cut(s)	46, 478, 943
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	786
Psp6I	CCWGG	2 cut(s)	202, 541
PspGI	CCWGG	2 cut(s)	202, 541
PspN4I	GGNNCC	2 cut(s)	201, 907
PspPI	GGNCC	2 cut(s)	239, 906
PstI	CTGCAG	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	3 cut(s)	191, 437, 1031
RsaNI	GTAC	3 cut(s)	190, 436, 1030
RseI	CAYNNNNRTG	2 cut(s)	276, 968
SaqAI	TTAA	4 cut(s)	294, 339, 594, 843
SatI	GCNGC	3 cut(s)	45, 477, 942
Sau3AI	GATC	5 cut(s)	52, 376, 561, 766, 778
Sau96I	GGNCC	2 cut(s)	239, 906
SbfI	CCTGCAGG	1 cut(s)	305
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	3 cut(s)	204, 543, 901
SdaI	CCTGCAGG	1 cut(s)	305
SexAI	ACCWGGT	1 cut(s)	541
SfaNI	GCATC	2 cut(s)	510, 767
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	2 cut(s)	276, 968
Sse8387I	CCTGCAGG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	340, 685, 840
SsiI	CCGC	1 cut(s)	590
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	6 cut(s)	411, 569, 674, 725, 737, 746
StyD4I	CCNGG	3 cut(s)	202, 541, 899
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	505, 628, 1034
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	1002
TasI	AATT	3 cut(s)	340, 685, 840
TfiI	GAWTC	6 cut(s)	255, 470, 498, 535, 667, 973
Tru1I	TTAA	4 cut(s)	294, 339, 594, 843
Tru9I	TTAA	4 cut(s)	294, 339, 594, 843
TseFI	GTSAC	3 cut(s)	226, 413, 524
TseI	GCWGC	3 cut(s)	44, 476, 941
Tsp45I	GTSAC	3 cut(s)	226, 413, 524
TspDTI	ATGAA	5 cut(s)	339, 416, 444, 548, 731
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	1 cut(s)	685
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	2 cut(s)	37, 790
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 278
XspI	CTAG	6 cut(s)	411, 569, 674, 725, 737, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.