Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

57384319 .. 57386811

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0447500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAAGTCTTGCTTACAACTGTGTTTTACTCCTTGTAACCGTTCTCAGTTTCAGCCCAGATAGATGCTTCTGTGCTGCTCACCAATCCAAACCAGAACACAAGGCGGCCTTGTTTGTGTTTGGGGACTCGCTCTTTGATTCTGGGAACAACCAATACCTCAATAGTAGTAGCGGTATGGGACCGGCAACAACTAAGCTGCCGTACGGAGAAACCTACTTCAAGCACGCCACTGGTCGGGTTTCCGATGGCCGCATTGTCCCCGATTTTATTGCTCAGTTTGCAAAGCTTCCTATGCCACCACCATATCTGCAACCTGGTGCACATCACTTTACAGACGGGGTCAATTTTGCTTCTGCCGGAGCTGGTGTTCTTCCCGGAACTTTCGCCGGAGCGATAGACTTTCCTACTCAATTGAGCTATTTTAAGGCCATGGAGAAGACACTGAGGCAGAGACTGGGTGATAAGGAAACCAAGAAGTTGCTGGGCAGAGCTGTTTATTTGCTCAGCATTGGAGGAAATGACTACTTTAGCTACGCTTCTAAAAACCCAAAAGCTCTACAGATCTACAAGAGACAGTATGTAGCAATGGTGCTCAGAAACTTGATCAGTGTGCTCAAAGAAATATATAATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTAGGACCTCTGGGATGCGTACCGGCAACAAAAGCAATGAATCCTGCACTCGGTAGTAAATGTTCTGACGAACCATTAACACTAGCCAGACTCCATAACAGAGCTCTATTCATTGCCTTCAAGAAGTTAGAGAAGAGCTTACCAGGATTCAAATTCTCAATATTCGACTACTACAATGCACTTGGGGACAGAATCAACAACCCTTCAAAATATGGTTTCAAGGATGGAAAGGCTGCTTGTTGTGGCAGTGGAGCATATAGGGGGTCTAATTGTGGCGGTGGGAGGAACGGGACAGCATATGAACTATGCAGCAATCCCAGTGAGTATGTGTGGTTTGATGGAGCTCACACAACTGAAAGTGCCAACCACCAACTAGCTGAACTTATTTGGAATGGACCACAAAATATCACAGGGCCTTACACTGTGAAAAAACTATTTGAGCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

370

Amino Acids

40.33

Weight (kDa)

9.27

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 350	1.7e-28	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	107, 174, 253, 939
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	815
AfaI	GTAC	2 cut(s)	206, 684
AfiI	CCNNNNNNNGG	2 cut(s)	237, 713
AgsI	TTSAA	5 cut(s)	223, 784, 814, 870, 883
AjnI	CCWGG	2 cut(s)	316, 805
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
Alw21I	GWGCWC	5 cut(s)	325, 597, 618, 769, 1009
Alw26I	GTCTC	2 cut(s)	448, 568
Alw44I	GTGCAC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	108, 250, 429, 1076
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	77, 199, 896, 972
ApoI	RAATTY	1 cut(s)	815
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspS9I	GGNCC	4 cut(s)	182, 668, 1058, 1076
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	2 cut(s)	74, 473
AvaII	GGWCC	3 cut(s)	182, 668, 1058
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	769, 1009
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	5 cut(s)	325, 597, 618, 769, 1009
BbvI	GCAGC	4 cut(s)	64, 186, 883, 984
BccI	CCATC	3 cut(s)	242, 881, 995
BceAI	ACGGC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	2 cut(s)	318, 807
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	448, 568
BfaI	CTAG	2 cut(s)	746, 1037
BfmI	CTRYAG	1 cut(s)	560
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	6 cut(s)	78, 108, 200, 253, 897, 973
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	6 cut(s)	79, 109, 201, 254, 898, 974
Bme1390I	CCNGG	3 cut(s)	318, 378, 807
Bme18I	GGWCC	3 cut(s)	182, 668, 1058
BmgT120I	GGNCC	4 cut(s)	182, 668, 1058, 1076
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	318, 378, 807
BmrI	ACTGGG	2 cut(s)	467, 975
BmsI	GCATC	2 cut(s)	56, 668
BmuI	ACTGGG	2 cut(s)	467, 975
BpiI	GAAGAC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 713
Bse118I	RCCGGY	2 cut(s)	184, 685
Bse1I	ACTGG	3 cut(s)	238, 462, 981
Bse3DI	GCAATG	3 cut(s)	594, 705, 774
BseBI	CCWGG	2 cut(s)	318, 807
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	683, 892
BseLI	CCNNNNNNNGG	2 cut(s)	237, 713
BseMI	GCAATG	3 cut(s)	594, 705, 774
BseMII	CTCAG	5 cut(s)	61, 290, 437, 520, 610
BseNI	ACTGG	3 cut(s)	238, 462, 981
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	4 cut(s)	64, 186, 883, 984
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	4 cut(s)	110, 252, 431, 1078
BsiHKAI	GWGCWC	5 cut(s)	325, 597, 618, 769, 1009
BsiSI	CCGG	5 cut(s)	185, 360, 378, 390, 686
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	5 cut(s)	140, 195, 245, 863, 967
BslI	CCNNNNNNNGG	2 cut(s)	237, 713
BsmAI	GTCTC	2 cut(s)	448, 568
BsmFI	GGGAC	5 cut(s)	140, 195, 245, 863, 967
BsnI	GGCC	4 cut(s)	110, 252, 431, 1078
Bsp1286I	GDGCHC	5 cut(s)	325, 597, 618, 769, 1009
Bsp143I	GATC	2 cut(s)	564, 606
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	4 cut(s)	107, 174, 253, 939
BspANI	GGCC	4 cut(s)	110, 252, 431, 1078
BspCNI	CTCAG	5 cut(s)	60, 289, 438, 519, 609
BspLI	GGNNCC	1 cut(s)	183
BspQI	GCTCTTC	1 cut(s)	791
BsrDI	GCAATG	3 cut(s)	594, 705, 774
BsrFI	RCCGGY	2 cut(s)	184, 685
BsrI	ACTGG	3 cut(s)	238, 462, 981
BssAI	RCCGGY	2 cut(s)	184, 685
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	564, 606
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	318, 807
Bst4CI	ACNGT	4 cut(s)	23, 43, 579, 1087
Bst6I	CTCTTC	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	228, 1107
BstDEI	CTNAG	6 cut(s)	47, 195, 276, 446, 506, 596
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	683, 892
BstKTI	GATC	2 cut(s)	567, 609
BstMAI	GTCTC	2 cut(s)	448, 568
BstMBI	GATC	2 cut(s)	564, 606
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 281, 295, 695
BstNI	CCWGG	2 cut(s)	318, 807
BstSCI	CCNGG	3 cut(s)	316, 376, 805
BstSFI	CTRYAG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	4 cut(s)	64, 186, 883, 984
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	4 cut(s)	110, 252, 431, 1078
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	683, 892
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	6 cut(s)	231, 443, 616, 916, 988, 1083
Cac8I	GCNNGC	2 cut(s)	228, 1107
CaiI	CAGNNNCTG	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	184, 685
Cfr13I	GGNCC	4 cut(s)	182, 668, 1058, 1076
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	205, 683
CviAII	CATG	1 cut(s)	433
CviQI	GTAC	2 cut(s)	205, 683
DdeI	CTNAG	6 cut(s)	47, 195, 276, 446, 506, 596
DpnI	GATC	2 cut(s)	566, 608
DpnII	GATC	2 cut(s)	564, 606
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Ecl136II	GAGCTC	2 cut(s)	767, 1007
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	2 cut(s)	769, 1009
Eco47I	GGWCC	3 cut(s)	182, 668, 1058
Eco53kI	GAGCTC	2 cut(s)	767, 1007
EcoICRI	GAGCTC	2 cut(s)	767, 1007
EcoO109I	RGGNCCY	2 cut(s)	668, 1076
EcoRII	CCWGG	2 cut(s)	316, 805
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	2 cut(s)	769, 1009
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	436
FalI	AAGNNNNNCTT	3 cut(s)	30, 95, 127
FaqI	GGGAC	5 cut(s)	140, 195, 245, 863, 967
FatI	CATG	1 cut(s)	432
FauNDI	CATATG	1 cut(s)	961
FbaI	TGATCA	1 cut(s)	606
Fnu4HI	GCNGC	6 cut(s)	78, 108, 200, 253, 897, 973
FokI	GGATG	2 cut(s)	690, 899
FriOI	GRGCYC	2 cut(s)	769, 1009
Fsp4HI	GCNGC	6 cut(s)	78, 108, 200, 253, 897, 973
FspBI	CTAG	2 cut(s)	746, 1037
GluI	GCNGC	6 cut(s)	78, 108, 200, 253, 897, 973
GsaI	CCCAGC	1 cut(s)	488
HaeIII	GGCC	4 cut(s)	110, 252, 431, 1078
HapII	CCGG	5 cut(s)	185, 360, 378, 390, 686
Hin1II	CATG	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	6 cut(s)	128, 140, 703, 753, 810, 855
HpaII	CCGG	5 cut(s)	185, 360, 378, 390, 686
HphI	GGTGA	2 cut(s)	74, 473
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	4 cut(s)	247, 599, 660, 730
Hpy188III	TCNNGA	1 cut(s)	784
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	636, 790, 876
HpyCH4III	ACNGT	4 cut(s)	23, 43, 579, 1087
HpyCH4V	TGCA	7 cut(s)	284, 313, 323, 653, 710, 842, 972
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 281, 295, 695
HpyF3I	CTNAG	6 cut(s)	47, 195, 276, 446, 506, 596
Hsp92II	CATG	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	564, 606
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	4 cut(s)	362, 392, 914, 1004
Lsp1109I	GCAGC	4 cut(s)	64, 186, 883, 984
LweI	GCATC	2 cut(s)	56, 668
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	2 cut(s)	746, 1037
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	566, 608
MboI	GATC	2 cut(s)	564, 606
MboII	GAAGA	3 cut(s)	365, 451, 808
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	5 cut(s)	325, 597, 618, 769, 1009
MluCI	AATT	6 cut(s)	346, 413, 631, 648, 815, 931
MlyI	GAGTC	2 cut(s)	122, 747
MnlI	CCTC	6 cut(s)	170, 441, 509, 632, 681, 939
MseI	TTAA	3 cut(s)	426, 740, 1111
MspI	CCGG	5 cut(s)	185, 360, 378, 390, 686
MspR9I	CCNGG	3 cut(s)	318, 378, 807
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	2 cut(s)	318, 807
MwoI	GCNNNNNNNGC	4 cut(s)	11, 281, 295, 695
NciI	CCSGG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	2 cut(s)	564, 606
NlaIII	CATG	1 cut(s)	436
NlaIV	GGNNCC	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	791
PfeI	GAWTC	4 cut(s)	140, 703, 810, 855
Pfl23II	CGTACG	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	6 cut(s)	79, 109, 201, 254, 898, 974
PleI	GAGTC	2 cut(s)	122, 747
PpsI	GAGTC	2 cut(s)	122, 747
PpuMI	RGGWCCY	1 cut(s)	668
Psp124BI	GAGCTC	2 cut(s)	769, 1009
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	316, 805
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	2 cut(s)	316, 805
PspLI	CGTACG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	4 cut(s)	182, 668, 1058, 1076
PspPPI	RGGWCCY	1 cut(s)	668
PsrI	GAACNNNNNNTAC	4 cut(s)	140, 172, 709, 741
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	564
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	206, 684
RsaNI	GTAC	2 cut(s)	205, 683
SacI	GAGCTC	2 cut(s)	769, 1009
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	3 cut(s)	426, 740, 1111
SatI	GCNGC	6 cut(s)	78, 108, 200, 253, 897, 973
Sau3AI	GATC	2 cut(s)	564, 606
Sau96I	GGNCC	4 cut(s)	182, 668, 1058, 1076
SchI	GAGTC	2 cut(s)	122, 747
ScrFI	CCNGG	3 cut(s)	318, 378, 807
SduI	GDGCHC	5 cut(s)	325, 597, 618, 769, 1009
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	56, 668
SfcI	CTRYAG	1 cut(s)	560
SinI	GGWCC	3 cut(s)	182, 668, 1058
Sse9I	AATT	6 cut(s)	346, 413, 631, 648, 815, 931
SsiI	CCGC	4 cut(s)	107, 174, 253, 939
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	2 cut(s)	746, 1037
SstI	GAGCTC	2 cut(s)	769, 1009
StyD4I	CCNGG	3 cut(s)	316, 376, 805
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	4 cut(s)	23, 43, 579, 1087
TaqI	TCGA	1 cut(s)	828
TasI	AATT	6 cut(s)	346, 413, 631, 648, 815, 931
TauI	GCSGC	2 cut(s)	110, 255
TfiI	GAWTC	4 cut(s)	140, 703, 810, 855
Tru1I	TTAA	3 cut(s)	426, 740, 1111
Tru9I	TTAA	3 cut(s)	426, 740, 1111
TscAI	CASTG	6 cut(s)	238, 450, 616, 916, 988, 1090
TseI	GCWGC	4 cut(s)	77, 199, 896, 972
TspDTI	ATGAA	3 cut(s)	716, 763, 978
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	6 cut(s)	238, 450, 616, 916, 988, 1090
Tth111I	GACNNNGTC	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	182, 668, 1058
XapI	RAATTY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	2 cut(s)	746, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.