Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

69316953 .. 69320130

Gene Structure 3178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGCTCCGAAATTTGTAGCGCCAAGGGAAACGGGAACTGCTTGGGATGGGCTGCGAGGGATGCTTCTGGAGTCCTATCACCTTACAAGTTTAACCGAAGGGATGTTCAAGGCGATGACGTTTCGATAAAGATTACACATTGCGGAGTATGTTATGCTGACATTCTTTGGCCAAGGAACAAACATGGAGGTGCAACTTATCCTATGGTGCCTGGACATGAGATTGCTGGCATTGTTCAAGAGGTTGGTCCAAATGTTCATCGCTTTAAAGTTGGCGACCATGTTGGAGTTGGAACTTATACTAATTCATGTCGAGATTGCGAGCATTGTAACGATGGCCAAGAAGTTTACTGTAATCGAAGAGTAGGAACTTATAACAGTCTTGATTACGATGGTACACTCACATATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGTACTGCTTTAAAATACCAGAAGAGTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGTATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCCGGGAAATCTCTAGGCGTGATAGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTCTCGGACTCAATGTCACCGTTTTCAGCACAAGCATGTCGAAGAAAGATGAAGCTTTAACTGTGCTTGGGGCAGACAACTTCGTAGTCTCGTCTGATGAAGACCAAATGACGGCACTAGCTAAGTCACTGGACTTTATCATTGACACAGCGTCTGGTGTTCATCCATTGGACGAGTACATGTCACTACTGAAGACAGCTGGTGTTCTAGTCCTCGTGGGTGCCCCAAATGAAATCAAATTGAGCCCTATAAGCCTTATTATGGGCAAGAGATCAATTACTGGTAGCGGAACAGGTGGTACAAAACCGATTCAAGAAATGATAGACTTCTGTGCTGCTCACAAAATATATCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAAGCTCTTGAGCGAATCATAAAAAAGGATGTTAAGTACCGATTTGTGATAGATATTGAAAATTCCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

359

Amino Acids

38.8

Weight (kDa)

6.26

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	39 - 155	2.8e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	195 - 317	5.5e-18	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB1I	GGYRCC	2 cut(s)	208, 836
AciI	CCGC	3 cut(s)	144, 582, 903
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	12, 605, 1063
AcuI	CTGAAG	2 cut(s)	465, 827
AfaI	GTAC	5 cut(s)	397, 446, 794, 916, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	727, 877
AflIII	ACRYGT	1 cut(s)	795
AgsI	TTSAA	5 cut(s)	110, 239, 929, 1061, 1072
AhdI	GACNNNNNGTC	2 cut(s)	629, 766
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	5 cut(s)	6, 671, 737, 815, 1007
AluI	AGCT	5 cut(s)	6, 671, 737, 815, 1007
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	170, 337, 574
ApeKI	GCWGC	3 cut(s)	53, 485, 950
ApoI	RAATTY	3 cut(s)	12, 605, 1063
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	248, 532
AsuC2I	CCSGG	2 cut(s)	552, 553
AsuHPI	GGTGA	2 cut(s)	72, 625
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	248, 532
BaeGI	GKGCMC	1 cut(s)	841
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	2 cut(s)	208, 836
BanII	GRGCYC	2 cut(s)	8, 863
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	723, 815
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	40, 497, 937
BccI	CCATC	4 cut(s)	42, 329, 386, 523
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	480
BcnI	CCSGG	2 cut(s)	552, 553
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	3 cut(s)	563, 734, 824
BfoI	RGCGCY	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	3 cut(s)	54, 486, 951
BlsI	GCNGC	3 cut(s)	55, 487, 952
Bme1390I	CCNGG	3 cut(s)	213, 552, 553
Bme18I	GGWCC	2 cut(s)	248, 532
BmeRI	GACNNNNNGTC	2 cut(s)	629, 766
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	2 cut(s)	248, 532
BmiI	GGNNCC	2 cut(s)	210, 838
BmrFI	CCNGG	3 cut(s)	213, 552, 553
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	723, 815
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	2 cut(s)	552, 553
BsaJI	CCNNGG	4 cut(s)	24, 173, 551, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 877
Bse1I	ACTGG	2 cut(s)	750, 901
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	4 cut(s)	24, 173, 551, 577
BseGI	GGATG	5 cut(s)	53, 67, 109, 778, 1036
BseLI	CCNNNNNNNGG	2 cut(s)	727, 877
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	750, 901
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	3 cut(s)	40, 497, 937
BshFI	GGCC	3 cut(s)	172, 339, 576
BshNI	GGYRCC	2 cut(s)	208, 836
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	552
BslI	CCNNNNNNNGG	2 cut(s)	727, 877
BsmAI	GTCTC	1 cut(s)	709
BsnI	GGCC	3 cut(s)	172, 339, 576
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	8, 841, 863
Bsp143I	GATC	1 cut(s)	887
BspACI	CCGC	3 cut(s)	144, 582, 903
BspANI	GGCC	3 cut(s)	172, 339, 576
BspLI	GGNNCC	2 cut(s)	210, 838
BspT107I	GGYRCC	2 cut(s)	208, 836
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	750, 901
BssECI	CCNNGG	4 cut(s)	24, 173, 551, 577
BssMI	GATC	1 cut(s)	887
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	3 cut(s)	24, 173, 577
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	6 cut(s)	353, 380, 430, 514, 637, 679
Bst6I	CTCTTC	2 cut(s)	355, 459
BstC8I	GCNNGC	2 cut(s)	229, 323
BstDEI	CTNAG	1 cut(s)	738
BstF5I	GGATG	5 cut(s)	53, 67, 109, 778, 1036
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	890
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	1 cut(s)	887
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	655, 799
BstSCI	CCNGG	3 cut(s)	211, 550, 551
BstSLI	GKGCMC	1 cut(s)	841
BstV1I	GCAGC	3 cut(s)	40, 497, 937
BstV2I	GAAGAC	2 cut(s)	723, 815
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	172, 339, 576
BtgZI	GCGATG	2 cut(s)	129, 245
BtsCI	GGATG	5 cut(s)	53, 67, 109, 778, 1036
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	3 cut(s)	426, 491, 743
Cac8I	GCNNGC	2 cut(s)	229, 323
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	248, 532
Cfr9I	CCCGGG	1 cut(s)	551
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	5 cut(s)	396, 445, 793, 915, 1039
CviAII	CATG	9 cut(s)	185, 218, 281, 309, 437, 526, 595, 652, 796
CviQI	GTAC	5 cut(s)	396, 445, 793, 915, 1039
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	1 cut(s)	889
DpnII	GATC	1 cut(s)	887
DraI	TTTAAA	2 cut(s)	268, 454
DriI	GACNNNNNGTC	2 cut(s)	629, 766
EaeI	YGGCCR	2 cut(s)	170, 337
Eam1104I	CTCTTC	2 cut(s)	355, 459
Eam1105I	GACNNNNNGTC	2 cut(s)	629, 766
EarI	CTCTTC	2 cut(s)	355, 459
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	24, 173, 577
Eco147I	AGGCCT	1 cut(s)	576
Eco24I	GRGCYC	2 cut(s)	8, 863
Eco47I	GGWCC	2 cut(s)	248, 532
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	465, 827
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	3 cut(s)	24, 173, 577
EcoT38I	GRGCYC	2 cut(s)	8, 863
ErhI	CCWWGG	3 cut(s)	24, 173, 577
FaeI	CATG	9 cut(s)	188, 221, 284, 312, 440, 529, 598, 655, 799
FatI	CATG	9 cut(s)	184, 217, 280, 308, 436, 525, 594, 651, 795
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	54, 486, 951
FokI	GGATG	5 cut(s)	60, 74, 116, 765, 1043
FriOI	GRGCYC	2 cut(s)	8, 863
Fsp4HI	GCNGC	3 cut(s)	54, 486, 951
FspBI	CTAG	3 cut(s)	563, 734, 824
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	54, 486, 951
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	172, 339, 576
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	756
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	9 cut(s)	188, 221, 284, 312, 440, 529, 598, 655, 799
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	5 cut(s)	72, 414, 624, 925, 1017
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	72, 625
Hpy166II	GTNNAC	3 cut(s)	349, 398, 517
Hpy188I	TCNGA	3 cut(s)	10, 623, 712
Hpy188III	TCNNGA	6 cut(s)	69, 239, 314, 383, 929, 1010
Hpy8I	GTNNAC	3 cut(s)	349, 398, 517
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	6 cut(s)	353, 380, 430, 514, 637, 679
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	9 cut(s)	188, 221, 284, 312, 440, 529, 598, 655, 799
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	887
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	3 cut(s)	40, 497, 937
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	563, 734, 824
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	5 cut(s)	329, 590, 631, 741, 798
MalI	GATC	1 cut(s)	889
MboI	GATC	1 cut(s)	887
MboII	GAAGA	5 cut(s)	372, 476, 670, 728, 820
MhlI	GDGCHC	3 cut(s)	8, 841, 863
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	7 cut(s)	12, 304, 605, 854, 891, 987, 1063
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	2 cut(s)	81, 618
MmeI	TCCRAC	2 cut(s)	265, 271
MnlI	CCTC	5 cut(s)	51, 182, 235, 404, 839
Mox20I	TGGCCA	2 cut(s)	172, 339
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	5 cut(s)	93, 267, 453, 674, 1035
MslI	CAYNNNNRTG	3 cut(s)	189, 599, 650
Msp20I	TGGCCA	2 cut(s)	172, 339
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	3 cut(s)	213, 552, 553
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
NciI	CCSGG	2 cut(s)	552, 553
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	1 cut(s)	887
NlaIII	CATG	9 cut(s)	188, 221, 284, 312, 440, 529, 598, 655, 799
NlaIV	GGNNCC	2 cut(s)	210, 838
NmuCI	GTSAC	4 cut(s)	590, 631, 741, 798
NspI	RCATGY	2 cut(s)	655, 799
PceI	AGGCCT	1 cut(s)	576
PciI	ACATGT	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	3 cut(s)	414, 925, 1017
PkrI	GCNGC	3 cut(s)	55, 487, 952
PleI	GAGTC	2 cut(s)	80, 618
PpsI	GAGTC	2 cut(s)	80, 618
PscI	ACATGT	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	210, 838
PspPI	GGNCC	2 cut(s)	248, 532
PsrI	GAACNNNNNNTAC	2 cut(s)	898, 930
PstNI	CAGNNNCTG	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	5 cut(s)	397, 446, 794, 916, 1040
RsaNI	GTAC	5 cut(s)	396, 445, 793, 915, 1039
RseI	CAYNNNNRTG	3 cut(s)	189, 599, 650
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	5 cut(s)	93, 267, 453, 674, 1035
SatI	GCNGC	3 cut(s)	54, 486, 951
Sau3AI	GATC	1 cut(s)	887
Sau96I	GGNCC	2 cut(s)	248, 532
SchI	GAGTC	2 cut(s)	81, 618
ScrFI	CCNGG	3 cut(s)	213, 552, 553
SduI	GDGCHC	3 cut(s)	8, 841, 863
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	2 cut(s)	248, 532
SmaI	CCCGGG	1 cut(s)	553
SmiMI	CAYNNNNRTG	3 cut(s)	189, 599, 650
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
Sse9I	AATT	7 cut(s)	12, 304, 605, 854, 891, 987, 1063
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	144, 582, 903
SspMI	CTAG	3 cut(s)	563, 734, 824
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	211, 550, 551
StyI	CCWWGG	3 cut(s)	24, 173, 577
TaaI	ACNGT	6 cut(s)	353, 380, 430, 514, 637, 679
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	125, 313, 358, 656
TasI	AATT	7 cut(s)	12, 304, 605, 854, 891, 987, 1063
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	3 cut(s)	414, 925, 1017
Tru1I	TTAA	5 cut(s)	93, 267, 453, 674, 1035
Tru9I	TTAA	5 cut(s)	93, 267, 453, 674, 1035
TscAI	CASTG	3 cut(s)	433, 498, 750
TseFI	GTSAC	4 cut(s)	590, 631, 741, 798
TseI	GCWGC	3 cut(s)	53, 485, 950
Tsp45I	GTSAC	4 cut(s)	590, 631, 741, 798
TspDTI	ATGAA	9 cut(s)	248, 297, 453, 557, 681, 729, 767, 861, 1017
TspMI	CCCGGG	1 cut(s)	551
TspRI	CASTG	3 cut(s)	433, 498, 750
VpaK11BI	GGWCC	2 cut(s)	248, 532
XapI	RAATTY	3 cut(s)	12, 605, 1063
XceI	RCATGY	2 cut(s)	655, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	3 cut(s)	563, 734, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.