Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

14980258 .. 14982238

Gene Structure 1981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGCTCCGAAATTAGTACAGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTCCTATCTCCTTATAAATTTAACCGAAGGAATGTTCAAGCTGACGATGTTTCCGTAAAGATCACACATTGTGGAGTTTGTTATGCTGAGGTGGTTTGGCCAAGGAACAAATTTGGAGATGCAATCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCGTCGCTTCAAAGTTGGCGACCATGTTGGAGTTGGAACTTATACCAACTCATGTAGAGATTGCGAGTATTGTAACGATGGCCAAGAAGTTTTCTGTGATAAAGCAGTTTTCACTTATAACCGTTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGTACTGCTTCAAAATACCAGAGGGCTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCATAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGGCTCAAGGTAACTGTTTTCAGCACAAGTATGTCAAAGAAAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCAAGACCAAATGAAGGCACTAGCTAAGTCACTTGACTTTATCATTGACACAGCATCTGGTGATCACCCATTCGACGAATACATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTCGTGGGTGCCCCAAGTGAAATCAAATTGAGCCCTATAAGCCTTATTATGGGTAAGAGATCAATTACCGGTAGCGCAACAGGTGGTACAAAATTGATTCAAGAAATGATAAACTTTTGTGCCGCTCACAAGATATATCCGAACATAGAAGTTGTTCCAATTCAGTACGTGAATGAAGCTATTGAGAGGCTCATAAACAAGGATGTCAAGTATCGTTTTGTGGTAGATATTGAAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

358

Amino Acids

38.98

Weight (kDa)

6.75

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 155	4.2e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	195 - 317	3.1e-19	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	228 - 341	4.5e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 375
AasI	GACNNNNNNGTC	1 cut(s)	698
AccB1I	GGYRCC	2 cut(s)	208, 836
AccBSI	CCGCTC	1 cut(s)	953
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	54, 582, 951
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	89, 182, 605
AcuI	CTGAAG	2 cut(s)	465, 827
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	5 cut(s)	19, 397, 446, 916, 995
AfiI	CCNNNNNNNGG	2 cut(s)	727, 877
AflIII	ACRYGT	1 cut(s)	795
AgeI	ACCGGT	1 cut(s)	896
AgsI	TTSAA	5 cut(s)	110, 268, 454, 929, 1061
AjnI	CCWGG	2 cut(s)	211, 550
AluBI	AGCT	5 cut(s)	6, 113, 671, 737, 1007
AluI	AGCT	5 cut(s)	6, 113, 671, 737, 1007
Alw21I	GWGCWC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	51, 170, 337, 574
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	3 cut(s)	89, 182, 605
AsiGI	ACCGGT	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	3 cut(s)	51, 248, 532
AsuHPI	GGTGA	2 cut(s)	770, 785
AvaII	GGWCC	2 cut(s)	248, 532
BaeGI	GKGCMC	1 cut(s)	841
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	2 cut(s)	208, 836
BanII	GRGCYC	3 cut(s)	8, 627, 863
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	4 cut(s)	42, 329, 386, 523
BciT130I	CCWGG	2 cut(s)	213, 552
BclI	TGATCA	1 cut(s)	775
BfaI	CTAG	2 cut(s)	734, 824
BisI	GCNGC	3 cut(s)	54, 486, 951
BlsI	GCNGC	3 cut(s)	55, 487, 952
Bme1390I	CCNGG	2 cut(s)	213, 552
Bme18I	GGWCC	2 cut(s)	248, 532
BmgT120I	GGNCC	3 cut(s)	51, 248, 532
BmiI	GGNNCC	2 cut(s)	210, 838
BmrFI	CCNGG	2 cut(s)	213, 552
BmsI	GCATC	3 cut(s)	52, 181, 776
BpiI	GAAGAC	1 cut(s)	815
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	997
BsaJI	CCNNGG	4 cut(s)	173, 406, 551, 577
BsaWI	WCCGGW	2 cut(s)	68, 896
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 877
Bse118I	RCCGGY	1 cut(s)	896
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	213, 552
BseDI	CCNNGG	4 cut(s)	173, 406, 551, 577
BseGI	GGATG	3 cut(s)	53, 707, 1036
BseLI	CCNNNNNNNGG	2 cut(s)	727, 877
BseMII	CTCAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	1 cut(s)	497
BshFI	GGCC	4 cut(s)	53, 172, 339, 576
BshNI	GGYRCC	2 cut(s)	208, 836
BshTI	ACCGGT	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	69, 897
BslI	CCNNNNNNNGG	2 cut(s)	727, 877
BsnI	GGCC	4 cut(s)	53, 172, 339, 576
Bsp1286I	GDGCHC	4 cut(s)	8, 627, 841, 863
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	132, 570, 775, 887
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	3 cut(s)	54, 582, 951
BspANI	GGCC	4 cut(s)	53, 172, 339, 576
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	210, 838
BspT107I	GGYRCC	2 cut(s)	208, 836
BsrBI	CCGCTC	1 cut(s)	953
BsrFI	RCCGGY	1 cut(s)	896
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	4 cut(s)	173, 406, 551, 577
BssMI	GATC	4 cut(s)	132, 570, 775, 887
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	3 cut(s)	173, 406, 577
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	2 cut(s)	213, 552
Bst4CI	ACNGT	4 cut(s)	380, 430, 514, 637
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	2 cut(s)	159, 738
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	3 cut(s)	53, 707, 1036
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	4 cut(s)	135, 573, 778, 890
BstMBI	GATC	4 cut(s)	132, 570, 775, 887
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
BstNI	CCWGG	2 cut(s)	213, 552
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	2 cut(s)	211, 550
BstSLI	GKGCMC	1 cut(s)	841
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	815
BsuRI	GGCC	4 cut(s)	53, 172, 339, 576
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	53, 707, 1036
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	426, 491
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	905
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	51, 248, 532
Csp6I	GTAC	5 cut(s)	18, 396, 445, 915, 994
CspAI	ACCGGT	1 cut(s)	896
CviAII	CATG	8 cut(s)	218, 281, 309, 407, 437, 526, 595, 796
CviQI	GTAC	5 cut(s)	18, 396, 445, 915, 994
DdeI	CTNAG	2 cut(s)	159, 738
DpnI	GATC	4 cut(s)	134, 572, 777, 889
DpnII	GATC	4 cut(s)	132, 570, 775, 887
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	2 cut(s)	170, 337
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	173, 406, 577
Eco24I	GRGCYC	3 cut(s)	8, 627, 863
Eco47I	GGWCC	2 cut(s)	248, 532
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	465, 827
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	211, 550
EcoT14I	CCWWGG	3 cut(s)	173, 406, 577
EcoT38I	GRGCYC	3 cut(s)	8, 627, 863
ErhI	CCWWGG	3 cut(s)	173, 406, 577
FaeI	CATG	8 cut(s)	221, 284, 312, 410, 440, 529, 598, 799
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	8 cut(s)	217, 280, 308, 406, 436, 525, 594, 795
FbaI	TGATCA	1 cut(s)	775
Fnu4HI	GCNGC	3 cut(s)	54, 486, 951
FokI	GGATG	3 cut(s)	60, 694, 1043
FriOI	GRGCYC	3 cut(s)	8, 627, 863
Fsp4HI	GCNGC	3 cut(s)	54, 486, 951
FspBI	CTAG	2 cut(s)	734, 824
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	3 cut(s)	54, 486, 951
HaeIII	GGCC	4 cut(s)	53, 172, 339, 576
HapII	CCGG	2 cut(s)	69, 897
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	8 cut(s)	221, 284, 312, 410, 440, 529, 598, 799
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HinfI	GANTC	4 cut(s)	72, 414, 676, 925
HpaII	CCGG	2 cut(s)	69, 897
HphI	GGTGA	2 cut(s)	770, 785
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	10, 675, 969
Hpy188III	TCNNGA	2 cut(s)	69, 929
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	2 cut(s)	264, 791
HpyAV	CCTTC	2 cut(s)	93, 721
HpyCH4III	ACNGT	4 cut(s)	380, 430, 514, 637
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	2 cut(s)	194, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
HpyF3I	CTNAG	2 cut(s)	159, 738
HpySE526I	ACGT	1 cut(s)	996
Hsp92II	CATG	8 cut(s)	221, 284, 312, 410, 440, 529, 598, 799
HspAI	GCGC	1 cut(s)	903
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	4 cut(s)	132, 570, 775, 887
LmnI	GCTCC	2 cut(s)	11, 686
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	3 cut(s)	52, 181, 776
MaeI	CTAG	2 cut(s)	734, 824
MaeII	ACGT	1 cut(s)	996
MaeIII	GTNAC	5 cut(s)	329, 590, 631, 741, 798
MalI	GATC	4 cut(s)	134, 572, 777, 889
MbiI	CCGCTC	1 cut(s)	953
MboI	GATC	4 cut(s)	132, 570, 775, 887
MboII	GAAGA	1 cut(s)	820
MhlI	GDGCHC	4 cut(s)	8, 627, 841, 863
MlsI	TGGCCA	2 cut(s)	172, 339
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	2 cut(s)	81, 670
MmeI	TCCRAC	3 cut(s)	265, 271, 735
MnlI	CCTC	6 cut(s)	154, 235, 404, 457, 839, 1008
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	981
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	3 cut(s)	566, 599, 650
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	2 cut(s)	69, 897
MspR9I	CCNGG	2 cut(s)	213, 552
MvaI	CCWGG	2 cut(s)	213, 552
MwoI	GCNNNNNNNGC	4 cut(s)	62, 485, 573, 867
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	132, 570, 775, 887
NlaIII	CATG	8 cut(s)	221, 284, 312, 410, 440, 529, 598, 799
NlaIV	GGNNCC	2 cut(s)	210, 838
NmuCI	GTSAC	3 cut(s)	590, 741, 798
NspI	RCATGY	1 cut(s)	799
PciI	ACATGT	1 cut(s)	795
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	2 cut(s)	414, 925
PinAI	ACCGGT	1 cut(s)	896
PkrI	GCNGC	3 cut(s)	55, 487, 952
PleI	GAGTC	2 cut(s)	80, 670
PpsI	GAGTC	2 cut(s)	80, 670
Ppu21I	YACGTR	1 cut(s)	997
PscI	ACATGT	1 cut(s)	795
PsiI	TTATAA	2 cut(s)	87, 375
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	211, 550
PspGI	CCWGG	2 cut(s)	211, 550
PspN4I	GGNNCC	2 cut(s)	210, 838
PspPI	GGNCC	3 cut(s)	51, 248, 532
PstNI	CAGNNNCTG	1 cut(s)	770
RsaI	GTAC	5 cut(s)	19, 397, 446, 916, 995
RsaNI	GTAC	5 cut(s)	18, 396, 445, 915, 994
RseI	CAYNNNNRTG	3 cut(s)	566, 599, 650
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	54, 486, 951
Sau3AI	GATC	4 cut(s)	132, 570, 775, 887
Sau96I	GGNCC	3 cut(s)	51, 248, 532
SchI	GAGTC	2 cut(s)	81, 670
ScrFI	CCNGG	2 cut(s)	213, 552
SduI	GDGCHC	4 cut(s)	8, 627, 841, 863
SfaNI	GCATC	3 cut(s)	52, 181, 776
SinI	GGWCC	2 cut(s)	248, 532
SmiMI	CAYNNNNRTG	3 cut(s)	566, 599, 650
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SsiI	CCGC	3 cut(s)	54, 582, 951
SspMI	CTAG	2 cut(s)	734, 824
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	211, 550
StyI	CCWWGG	3 cut(s)	173, 406, 577
TaaI	ACNGT	4 cut(s)	380, 430, 514, 637
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	1 cut(s)	786
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	2 cut(s)	56, 953
TfiI	GAWTC	2 cut(s)	414, 925
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	433, 498
TseFI	GTSAC	3 cut(s)	590, 741, 798
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	3 cut(s)	590, 741, 798
TspDTI	ATGAA	4 cut(s)	453, 557, 740, 1017
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	433, 498
VpaK11BI	GGWCC	2 cut(s)	248, 532
XapI	RAATTY	3 cut(s)	89, 182, 605
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	2 cut(s)	734, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.