Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

20546285 .. 20548372

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G194000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGCTCTGAAAATACTGGTGCAAATGGAAATGGGGACTGCTTGGGTTGGGCTGCAACAGATGAATCTGGAATTTTATCGCCTTACAAGTTTAGCCGAAGGTCTCTTCAAAACGATGATGTTTCCGTAAAGATTACACACTGCGGAATTTGTTATGCTGATGTGCTTTTTCCAAGGAACAAGCATGGAAATGCAAAGTATCCAATGGTGCCCGGACATGAGATTGCTGGCATTGTGCAAGAAGTTGGTTCCAATGTTCGTGGCTTCAAAGTCGGTGACCATGTCGGAATAGGAACTTATGTTAATTCATGCAGAAACTGTGACTATTGTGGTGATGGTCTTGAAATTTTTTGTGAAAAGGGAGCAGTTTTTACTTATAACAATGTTGATGAGGATGGCACAATTACACAAGGAGGGTTTTCCAGTTACATTGTTGCTCATCAAGGGTACTGCTTCCGGATACCAGATGGCTATCCATTGGCCTCAGCAGCTCCTCTGCTTTGTGCTGGCATCACGGTTTACACTCCGATGATACGCCACAAGATGAACCAGCCCGGAAAATCTCTAGGGGTGATTGGACTTGGTGGCCTTGGTCACTTGGCAGTGAAATTTGGGAAGGCTTTTGGGCTAAATGTGACCGTTTTCAGCACAAGCACATCGAAGAAAGAAGAAGCTCTAACTCTGCTTGGTGCAGACAATTTCGTGGTCTCATCCAACCTAGAGCAGATGACGGCCCTGGCTAAGTCACTTGACTTCATTATTGACACAGCATCTGGTGATCATCCATTTGATCCATACATGTCCCTGTTGAAGACTGCTGGTGTTCTTGTCTTGGTTGGGGCTCCAAGTGAAGTCAAATTGAGTCCTCTAAGCCTGATTGGGGGTATGAAGTCGATTTCTGGTAGCGCAACGGGCGGTACGAAGCAGACGCAGGAAATGCTAGACTTCTGTGCTGCTCACAAGATATATCCAAACATAGAAATAGTACCAATTCAGTATGTAAATGAAGCTCTTGAGAGGCTGATAAAGAGGGATGTGAAGTACCGTTTCGTGATAGATGTCGAAAGCTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

38.44

Weight (kDa)

6.14

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	2 cut(s)	144, 915
AclWI	GGATC	1 cut(s)	785
AcsI	RAATTY	4 cut(s)	72, 147, 345, 608
AfaI	GTAC	4 cut(s)	449, 919, 987, 1043
AfiI	CCNNNNNNNGG	1 cut(s)	880
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	4 cut(s)	110, 268, 344, 811
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	5 cut(s)	6, 491, 674, 1010, 1068
AluI	AGCT	5 cut(s)	6, 491, 674, 1010, 1068
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	108, 712
AlwI	GGATC	1 cut(s)	785
AlwNI	CAGNNNCTG	2 cut(s)	318, 773
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	3 cut(s)	480, 586, 732
ApeKI	GCWGC	3 cut(s)	53, 488, 953
ApoI	RAATTY	4 cut(s)	72, 147, 345, 608
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	1 cut(s)	733
AsuC2I	CCSGG	2 cut(s)	213, 555
AsuHPI	GGTGA	4 cut(s)	287, 344, 583, 788
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	8, 844
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	484
BbvI	GCAGC	3 cut(s)	40, 500, 940
BccI	CCATC	3 cut(s)	329, 389, 461
BceAI	ACGGC	1 cut(s)	747
BciT130I	CCWGG	1 cut(s)	737
BciVI	GTATCC	2 cut(s)	210, 453
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	2 cut(s)	213, 555
BcoDI	GTCTC	2 cut(s)	108, 712
BfaI	CTAG	3 cut(s)	566, 719, 941
BfuI	GTATCC	2 cut(s)	210, 453
BisI	GCNGC	3 cut(s)	54, 489, 954
BlsI	GCNGC	3 cut(s)	55, 490, 955
Bme1390I	CCNGG	3 cut(s)	213, 555, 737
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	3 cut(s)	210, 250, 843
BmrFI	CCNGG	3 cut(s)	213, 555, 737
BmsI	GCATC	2 cut(s)	519, 779
BpiI	GAAGAC	1 cut(s)	818
Bpu10I	CCTNAGC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	1034
BpuMI	CCSGG	2 cut(s)	213, 555
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	108, 712
BsaJI	CCNNGG	3 cut(s)	173, 589, 735
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse1I	ACTGG	2 cut(s)	22, 423
Bse8I	GATNNNNATC	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	3 cut(s)	173, 589, 735
BseGI	GGATG	4 cut(s)	400, 710, 781, 1039
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	22, 423
BseRI	GAGGAG	1 cut(s)	483
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	40, 500, 940
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	482, 588, 734
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	213, 457, 555
BslFI	GGGAC	2 cut(s)	50, 787
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	2 cut(s)	108, 712
BsmFI	GGGAC	2 cut(s)	50, 787
BsnI	GGCC	3 cut(s)	482, 588, 734
Bso31I	GGTCTC	2 cut(s)	108, 712
Bsp1286I	GDGCHC	3 cut(s)	8, 213, 844
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	778, 790
BspACI	CCGC	2 cut(s)	144, 915
BspANI	GGCC	3 cut(s)	482, 588, 734
BspCNI	CTCAG	1 cut(s)	497
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	210, 250, 843
BspPI	GGATC	1 cut(s)	785
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	2 cut(s)	108, 712
BsrI	ACTGG	2 cut(s)	22, 423
BssECI	CCNNGG	3 cut(s)	173, 589, 735
BssMI	GATC	2 cut(s)	778, 790
BssT1I	CCWWGG	2 cut(s)	173, 589
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	4 cut(s)	320, 517, 640, 1046
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	937
BstC8I	GCNNGC	2 cut(s)	229, 508
BstDEI	CTNAG	3 cut(s)	484, 741, 869
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	4 cut(s)	400, 710, 781, 1039
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	2 cut(s)	781, 793
BstMAI	GTCTC	2 cut(s)	108, 712
BstMBI	GATC	2 cut(s)	778, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 912, 937
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	802
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	211, 553, 735
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	40, 500, 940
BstV2I	GAAGAC	1 cut(s)	818
BsuI	GTATCC	2 cut(s)	210, 453
BsuRI	GGCC	3 cut(s)	482, 588, 734
BtsCI	GGATG	4 cut(s)	400, 710, 781, 1039
BtsI	GCAGTG	2 cut(s)	139, 609
BtsIMutI	CAGTG	2 cut(s)	139, 609
Cac8I	GCNNGC	2 cut(s)	229, 508
CaiI	CAGNNNCTG	2 cut(s)	318, 773
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	733
CseI	GACGC	1 cut(s)	937
Csp6I	GTAC	4 cut(s)	448, 918, 986, 1042
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	5 cut(s)	185, 218, 281, 309, 799
CviQI	GTAC	4 cut(s)	448, 918, 986, 1042
DdeI	CTNAG	3 cut(s)	484, 741, 869
DpnI	GATC	2 cut(s)	780, 792
DpnII	GATC	2 cut(s)	778, 790
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	173, 589
Eco24I	GRGCYC	2 cut(s)	8, 844
Eco31I	GGTCTC	2 cut(s)	108, 712
Eco53kI	GAGCTC	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	173, 589
EcoT38I	GRGCYC	2 cut(s)	8, 844
ErhI	CCWWGG	2 cut(s)	173, 589
FaeI	CATG	5 cut(s)	188, 221, 284, 312, 802
FaqI	GGGAC	2 cut(s)	50, 787
FatI	CATG	5 cut(s)	184, 217, 280, 308, 798
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	54, 489, 954
FokI	GGATG	4 cut(s)	407, 697, 768, 1046
FriOI	GRGCYC	2 cut(s)	8, 844
Fsp4HI	GCNGC	3 cut(s)	54, 489, 954
FspBI	CTAG	3 cut(s)	566, 719, 941
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	3 cut(s)	54, 489, 954
HaeIII	GGCC	3 cut(s)	482, 588, 734
HapII	CCGG	3 cut(s)	213, 457, 555
HgaI	GACGC	1 cut(s)	937
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	5 cut(s)	188, 221, 284, 312, 802
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HinfI	GANTC	2 cut(s)	65, 862
HpaII	CCGG	3 cut(s)	213, 457, 555
HphI	GGTGA	4 cut(s)	287, 344, 583, 788
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	3 cut(s)	10, 287, 528
Hpy188III	TCNNGA	5 cut(s)	69, 341, 457, 1013, 1051
Hpy8I	GTNNAC	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	93, 610
HpyCH4III	ACNGT	4 cut(s)	320, 517, 640, 1046
HpyCH4V	TGCA	6 cut(s)	23, 56, 194, 238, 312, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 912, 937
HpyF3I	CTNAG	3 cut(s)	484, 741, 869
Hsp92II	CATG	5 cut(s)	188, 221, 284, 312, 802
HspAI	GCGC	1 cut(s)	906
Kpn2I	TCCGGA	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	778, 790
LmnI	GCTCC	4 cut(s)	362, 496, 847, 1073
Lsp1109I	GCAGC	3 cut(s)	40, 500, 940
LweI	GCATC	2 cut(s)	519, 779
MaeI	CTAG	3 cut(s)	566, 719, 941
MaeIII	GTNAC	6 cut(s)	275, 320, 425, 593, 634, 744
MalI	GATC	2 cut(s)	780, 792
MboI	GATC	2 cut(s)	778, 790
MboII	GAAGA	4 cut(s)	98, 673, 680, 823
MhlI	GDGCHC	3 cut(s)	8, 213, 844
MluCI	AATT	9 cut(s)	72, 147, 304, 345, 402, 608, 697, 857, 990
MlyI	GAGTC	1 cut(s)	871
MmeI	TCCRAC	2 cut(s)	265, 738
MnlI	CCTC	7 cut(s)	385, 407, 493, 504, 876, 1011, 1023
MroI	TCCGGA	1 cut(s)	456
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	189, 527
MspI	CCGG	3 cut(s)	213, 457, 555
MspR9I	CCNGG	3 cut(s)	213, 555, 737
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	3 cut(s)	488, 912, 937
NciI	CCSGG	2 cut(s)	213, 555
NdeII	GATC	2 cut(s)	778, 790
NlaIII	CATG	5 cut(s)	188, 221, 284, 312, 802
NlaIV	GGNNCC	3 cut(s)	210, 250, 843
NmuCI	GTSAC	5 cut(s)	275, 320, 593, 634, 744
NspI	RCATGY	1 cut(s)	802
PciI	ACATGT	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	55, 490, 955
PleI	GAGTC	1 cut(s)	870
PpsI	GAGTC	1 cut(s)	870
PscI	ACATGT	1 cut(s)	798
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	735
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	210, 250, 843
PspPI	GGNCC	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	318, 773
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	4 cut(s)	449, 919, 987, 1043
RsaNI	GTAC	4 cut(s)	448, 918, 986, 1042
RseI	CAYNNNNRTG	2 cut(s)	189, 527
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	54, 489, 954
Sau3AI	GATC	2 cut(s)	778, 790
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	1 cut(s)	871
ScrFI	CCNGG	3 cut(s)	213, 555, 737
SduI	GDGCHC	3 cut(s)	8, 213, 844
SetI	ASST	7 cut(s)	8, 104, 493, 676, 720, 1012, 1070
SfaNI	GCATC	2 cut(s)	519, 779
SmiMI	CAYNNNNRTG	2 cut(s)	189, 527
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	9 cut(s)	72, 147, 304, 345, 402, 608, 697, 857, 990
SsiI	CCGC	2 cut(s)	144, 915
SspMI	CTAG	3 cut(s)	566, 719, 941
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	211, 553, 735
StyI	CCWWGG	2 cut(s)	173, 589
TaaI	ACNGT	4 cut(s)	320, 517, 640, 1046
TaqI	TCGA	3 cut(s)	659, 893, 1062
TasI	AATT	9 cut(s)	72, 147, 304, 345, 402, 608, 697, 857, 990
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	146, 609
TseFI	GTSAC	5 cut(s)	275, 320, 593, 634, 744
TseI	GCWGC	3 cut(s)	53, 488, 953
Tsp45I	GTSAC	5 cut(s)	275, 320, 593, 634, 744
TspDTI	ATGAA	6 cut(s)	78, 297, 560, 745, 902, 1020
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	146, 609
Tth111I	GACNNNGTC	1 cut(s)	281
XapI	RAATTY	4 cut(s)	72, 147, 345, 608
XceI	RCATGY	1 cut(s)	802
XspI	CTAG	3 cut(s)	566, 719, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.