Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

5836971 .. 5839713

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10200.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGTGAGAAGGGGAATTGCATCGGATATGCTGCAAGGGATCCATCTGGGGTTCTATCCCATTATGAGTTCAGCCGCAGGGATCTTGGAACCGACGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGAGTTGGACCAGAAATAAGCTTGGAGACTCAAAGTACCCTTTAGTACCAGGCCACGAGATTGCTGGTATTGTAAAAGAGGTAGGTTCAAATGTTCAGCGCTTCAAAGTTGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCCTGCAGAGATTGTGTGTATTGCAATGATGGACTTGAAGTTCAGTGTGTAAAGGGATCAGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCATATAGTTGTTCATGATAGGTACTGCTACAATATACCTGATAACTATCCATTGGCTTCAGCAGCACCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCTATGATGCGCCATAAGATGAACCAACCTGGTAAATCTCTAGGAGTGATAGGGCTTGGTGGTCTTGGTCACATGGCAGTGAAGTTTGGAAAGGCATTTGGTTTGAGTGTAACAGTATTCAGCACAAGCATATCCAAGAAAGAGGAAGCCTTAAGTCAGCTTGGTGCAGATAAATTTGTGCTCTCATCTGACCAAGAGCAGATGAAGGGCTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCATCTGGTGATCACCCATTTGATCCATACATGGCATTGTTGAAGACTAGTGGAATTCTGGTCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCAAGCCTTATTCTAGGTATGAGAACCGTTTCTGGAAGTGTAACGGGTGGAACAAAAGATACACAAGAAATGATAGATTTCTGTGCTGCTCATGGAATCCACCCAATGATTGAAGTAATTCCAATTCAATATGCAAATGAAGCTATTGACAGGCTTACAAAGAGAGATGTGAAATACCGATTTGTGATTGACATTGAAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

353

Amino Acids

38.05

Weight (kDa)

6.59

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	23 - 111	2.6e-14	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	151 - 273	4.3e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	76, 123
AclWI	GGATC	5 cut(s)	35, 48, 90, 349, 764
AcsI	RAATTY	3 cut(s)	677, 801, 836
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	4 cut(s)	179, 189, 379, 428
AfeI	AGCGCT	1 cut(s)	242
AflII	CTTAAG	1 cut(s)	655
AgsI	TTSAA	7 cut(s)	231, 247, 323, 790, 959, 974, 1043
AhlI	ACTAGT	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	190, 532
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	3 cut(s)	163, 664, 989
AluI	AGCT	3 cut(s)	163, 664, 989
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	5 cut(s)	35, 48, 90, 349, 764
AlwNI	CAGNNNCTG	1 cut(s)	752
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	32, 467, 932
ApoI	RAATTY	3 cut(s)	677, 801, 836
Asp700I	GAANNNNTTC	2 cut(s)	874, 963
AspLEI	GCGC	2 cut(s)	243, 516
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	4 cut(s)	266, 730, 752, 767
AvaII	GGWCC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	388, 421
BamHI	GGATCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	19, 479, 919
BccI	CCATC	3 cut(s)	52, 308, 368
BciT130I	CCWGG	2 cut(s)	192, 534
BciVI	GTATCC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	3 cut(s)	545, 795, 860
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	244
BfrI	CTTAAG	1 cut(s)	655
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	4 cut(s)	33, 76, 468, 933
BlsI	GCNGC	4 cut(s)	34, 77, 469, 934
Bme1390I	CCNGG	2 cut(s)	192, 534
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	42, 91, 274
BmrFI	CCNGG	2 cut(s)	192, 534
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	4 cut(s)	30, 358, 501, 758
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	450
Bse1I	ACTGG	2 cut(s)	402, 825
Bse3DI	GCAATG	2 cut(s)	118, 316
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	2 cut(s)	192, 534
BseJI	GATNNNNATC	1 cut(s)	450
BseMI	GCAATG	2 cut(s)	118, 316
BseNI	ACTGG	2 cut(s)	402, 825
BseXI	GCAGC	3 cut(s)	19, 479, 919
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	687
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	40, 82, 341, 757, 769
BspACI	CCGC	2 cut(s)	76, 123
BspANI	GGCC	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	42, 91, 274
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	5 cut(s)	35, 48, 90, 349, 764
BspTI	CTTAAG	1 cut(s)	655
BsrDI	GCAATG	2 cut(s)	118, 316
BsrI	ACTGG	2 cut(s)	402, 825
BssMI	GATC	5 cut(s)	40, 82, 341, 757, 769
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	192, 534
Bst4CI	ACNGT	3 cut(s)	496, 619, 874
BstAFI	CTTAAG	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	850
BstEII	GGTNACC	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	2 cut(s)	243, 516
BstKTI	GATC	5 cut(s)	43, 85, 344, 760, 772
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	5 cut(s)	40, 82, 341, 757, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 986
BstNI	CCWGG	2 cut(s)	192, 534
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	190, 532
BstSFI	CTRYAG	1 cut(s)	289
BstV1I	GCAGC	3 cut(s)	19, 479, 919
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	2 cut(s)	40, 82
BstYI	RGATCY	2 cut(s)	40, 82
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	335, 588, 832
Cac8I	GCNNGC	1 cut(s)	850
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	243, 516
Cfr13I	GGNCC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	532
Csp6I	GTAC	4 cut(s)	178, 188, 378, 427
CviAII	CATG	5 cut(s)	260, 419, 577, 778, 938
CviQI	GTAC	4 cut(s)	178, 188, 378, 427
DpnI	GATC	5 cut(s)	42, 84, 343, 759, 771
DpnII	GATC	5 cut(s)	40, 82, 341, 757, 769
Eco47I	GGWCC	1 cut(s)	150
Eco47III	AGCGCT	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	190, 532
FaeI	CATG	5 cut(s)	263, 422, 580, 781, 941
FatI	CATG	5 cut(s)	259, 418, 576, 777, 937
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	33, 76, 468, 933
Fsp4HI	GCNGC	4 cut(s)	33, 76, 468, 933
FspBI	CTAG	3 cut(s)	545, 795, 860
GlaI	GCGC	2 cut(s)	242, 515
GluI	GCNGC	4 cut(s)	33, 76, 468, 933
GsuI	CTGGAG	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	195
HhaI	GCGC	2 cut(s)	243, 516
Hin1II	CATG	5 cut(s)	263, 422, 580, 781, 941
Hin6I	GCGC	2 cut(s)	241, 514
HinP1I	GCGC	2 cut(s)	241, 514
HincII	GTYRAC	2 cut(s)	283, 742
HindII	GTYRAC	2 cut(s)	283, 742
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	3 cut(s)	170, 819, 942
HphI	GGTGA	4 cut(s)	266, 730, 752, 767
Hpy166II	GTNNAC	2 cut(s)	283, 742
Hpy188I	TCNGA	2 cut(s)	26, 694
Hpy188III	TCNNGA	2 cut(s)	419, 879
Hpy8I	GTNNAC	2 cut(s)	283, 742
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	4, 703
HpyCH4III	ACNGT	3 cut(s)	496, 619, 874
HpyCH4V	TGCA	7 cut(s)	21, 35, 291, 309, 671, 848, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 986
Hsp92II	CATG	5 cut(s)	263, 422, 580, 781, 941
HspAI	GCGC	2 cut(s)	241, 514
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	40, 82, 341, 757, 769
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	19, 479, 919
LweI	GCATC	4 cut(s)	30, 358, 501, 758
MabI	ACCWGGT	1 cut(s)	532
MaeI	CTAG	3 cut(s)	545, 795, 860
MaeIII	GTNAC	5 cut(s)	254, 572, 613, 723, 886
MalI	GATC	5 cut(s)	42, 84, 343, 759, 771
MboI	GATC	5 cut(s)	40, 82, 341, 757, 769
MboII	GAAGA	1 cut(s)	802
MflI	RGATCY	2 cut(s)	40, 82
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	9 cut(s)	16, 111, 381, 489, 677, 801, 836, 963, 969
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	128, 244
MnlI	CCTC	2 cut(s)	214, 640
MroXI	GAANNNNTTC	2 cut(s)	874, 963
MseI	TTAA	2 cut(s)	357, 656
MslI	CAYNNNNRTG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	192, 534
MvaI	CCWGG	2 cut(s)	192, 534
MwoI	GCNNNNNNNGC	2 cut(s)	467, 986
NdeII	GATC	5 cut(s)	40, 82, 341, 757, 769
NlaIII	CATG	5 cut(s)	263, 422, 580, 781, 941
NlaIV	GGNNCC	3 cut(s)	42, 91, 274
NmuCI	GTSAC	3 cut(s)	254, 572, 723
PagI	TCATGA	1 cut(s)	418
PdmI	GAANNNNTTC	2 cut(s)	874, 963
PfeI	GAWTC	2 cut(s)	819, 942
PkrI	GCNGC	4 cut(s)	34, 77, 469, 934
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	190, 532
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	190, 532
PspN4I	GGNNCC	3 cut(s)	42, 91, 274
PspPI	GGNCC	1 cut(s)	150
PsrI	GAACNNNNNNTAC	2 cut(s)	889, 921
PstI	CTGCAG	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	2 cut(s)	40, 82
RsaI	GTAC	4 cut(s)	179, 189, 379, 428
RsaNI	GTAC	4 cut(s)	178, 188, 378, 427
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	357, 656
SatI	GCNGC	4 cut(s)	33, 76, 468, 933
Sau3AI	GATC	5 cut(s)	40, 82, 341, 757, 769
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	192, 534
SduI	GDGCHC	1 cut(s)	687
SexAI	ACCWGGT	1 cut(s)	532
SfaNI	GCATC	4 cut(s)	30, 358, 501, 758
SfcI	CTRYAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SpeI	ACTAGT	1 cut(s)	794
Sse9I	AATT	9 cut(s)	16, 111, 381, 489, 677, 801, 836, 963, 969
SsiI	CCGC	2 cut(s)	76, 123
SspMI	CTAG	3 cut(s)	545, 795, 860
StyD4I	CCNGG	2 cut(s)	190, 532
TaaI	ACNGT	3 cut(s)	496, 619, 874
TasI	AATT	9 cut(s)	16, 111, 381, 489, 677, 801, 836, 963, 969
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	819, 942
Tru1I	TTAA	2 cut(s)	357, 656
Tru9I	TTAA	2 cut(s)	357, 656
TscAI	CASTG	3 cut(s)	335, 588, 832
TseFI	GTSAC	3 cut(s)	254, 572, 723
TseI	GCWGC	3 cut(s)	32, 467, 932
Tsp45I	GTSAC	3 cut(s)	254, 572, 723
TspDTI	ATGAA	4 cut(s)	407, 539, 722, 999
TspRI	CASTG	3 cut(s)	335, 588, 832
Vha464I	CTTAAG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	3 cut(s)	677, 801, 836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmnI	GAANNNNTTC	2 cut(s)	874, 963
XspI	CTAG	3 cut(s)	545, 795, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.