Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

60621085 .. 60621510

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0487300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTAAGTGACATGAAGAAGAACGTTAACGACTCTGATGATATTGTCAATGGAGAATGTAGTGCCGTTAAGTCTGATGATATGGGACCTTGGATGTTAATGACATATAAAAGTAGAAAAAAGAATGGTCCTGCTACTGTGAAGAAAAACCAAAACTCAGGTTCAAGATTCAGTGTGCTTCAAGATGATCCTGATGCGGTGGATAATGAAACTAATGGTGACAGGCAAAGTAATGTACATGCTCAGACTTCAACCATTGTCAAACTATGGCAAAATTTCCAGGATAAAGCTGCCAAATTAAATTGTCCAAAAGCCACAACGAGTGCTGATGTTGTGAACGAACAGATAAGTGGAAAGGAGAAAGTAACTCAGGGAGCGGCTAATCAAATTTATAATGTTGGAGCTTATAGGAAACCGATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

8.85

Isoelectric Point (pI)

14.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	377
AciI	CCGC	2 cut(s)	197, 377
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	2 cut(s)	274, 387
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	165, 182, 252
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	290, 404
AluI	AGCT	2 cut(s)	290, 404
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	2 cut(s)	274, 387
AspS9I	GGNCC	2 cut(s)	86, 128
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	86, 128
BbvI	GCAGC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	281
BisI	GCNGC	2 cut(s)	291, 378
BlsI	GCNGC	2 cut(s)	292, 379
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	86, 128
BmgT120I	GGNCC	2 cut(s)	86, 128
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	171, 257, 383
BseXI	GCAGC	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	2 cut(s)	197, 377
BspCNI	CTCAG	3 cut(s)	170, 256, 382
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	235
BstDEI	CTNAG	3 cut(s)	157, 243, 369
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	86, 128
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	2 cut(s)	13, 239
CviJI	RGCY	4 cut(s)	290, 314, 380, 404
CviKI_1	RGCY	4 cut(s)	290, 314, 380, 404
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	3 cut(s)	157, 243, 369
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	86, 128
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	2 cut(s)	16, 242
FaiI	YATR	8 cut(s)	14, 83, 106, 108, 240, 268, 393, 408
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	12, 238
Fnu4HI	GCNGC	2 cut(s)	291, 378
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	2 cut(s)	291, 378
GluI	GCNGC	2 cut(s)	291, 378
Hin1II	CATG	2 cut(s)	16, 242
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	32, 168, 418
HpaI	GTTAAC	1 cut(s)	28
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	28, 337
Hpy188I	TCNGA	3 cut(s)	37, 76, 246
Hpy188III	TCNNGA	3 cut(s)	165, 182, 191
Hpy8I	GTNNAC	2 cut(s)	28, 337
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	157, 243, 369
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	16, 242
KspAI	GTTAAC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	374, 401
LpnPI	CCDG	7 cut(s)	144, 144, 204, 208, 266, 293, 356
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	3 cut(s)	8, 218, 364
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	28, 31, 154
MluCI	AATT	4 cut(s)	274, 296, 301, 387
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	379
MseI	TTAA	4 cut(s)	27, 69, 98, 299
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	16, 242
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	8, 218
NspI	RCATGY	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	168, 418
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	292, 379
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	86, 128
PspPPI	RGGWCCY	1 cut(s)	86
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	27, 69, 98, 299
SatI	GCNGC	2 cut(s)	291, 378
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	2 cut(s)	86, 128
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	5 cut(s)	27, 91, 163, 292, 406
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	2 cut(s)	86, 128
Sse9I	AATT	4 cut(s)	274, 296, 301, 387
SsiI	CCGC	2 cut(s)	197, 377
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	274, 296, 301, 387
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	168, 418
Tru1I	TTAA	4 cut(s)	27, 69, 98, 299
Tru9I	TTAA	4 cut(s)	27, 69, 98, 299
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	8, 218
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	2 cut(s)	8, 218
TspDTI	ATGAA	2 cut(s)	29, 222
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	2 cut(s)	86, 128
XapI	RAATTY	2 cut(s)	274, 387
XceI	RCATGY	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.