Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454251.1

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1430

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454251.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 979 bp

gaatgttcaagccgacgatgtttccataaagatcacacattgtggagtttgctatgctgaggtcgtttggccaaggaacaaacatggagatgcaacctatcctatggtgcctggacatgagattgttggcattgtgcaagaggttggtccaaatgttcatcgcttcaaagttggagaccatgttggggttggaacttataccaactcatgtagagattgcgagtattgtaacgatggccaagaagtttactgtgataagggagcagtatttacttataaccgttttgattacaatggcaccatcacccatggagggttctccactttcactgttgtccacgaaaggtactgcttcaaaataccagaggactatccattggcttcagcagccccactgctttgtgctggcattactgtttacgctcccatgatggaccataagatgaaccaacctgggaaatccctaggcgtgatcggccttggtggtcttggtcacatggctgtgaaattcggcaaggctttgggactcaaggtaactgttttcagcacaagcatgtcaaagaaagacgaagctctgactctgcttggagcagacaatttcgtcatatcatccaaccaagaccaaatgaaggcactagctaaatcacttgactttatcattgacacagcatctggtgatcacccattcgacgagtacatgtcactactgaagactgctggtgttctagtcctcgtgggtgccccaagtgaaatcaaattgagccctataagccttattatgggtaagagatcaattaccggtagcgcaacaggtggtacaaaacagattcaagaaatgataaacttttgtgccgctcacaagatatacccaaacatagaagttgttccaattcagtatgtgaatgaagctattgagaggctcataaacaaggatgtcaagtatcgctttgtggtagatattgaaaactccctgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

325

Amino Acids

35.47

Weight (kDa)

6.27

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	277
AasI	GACNNNNNNGTC	1 cut(s)	600
AccB1I	GGYRCC	3 cut(s)	107, 297, 738
AccBSI	CCGCTC	1 cut(s)	855
AciI	CCGC	1 cut(s)	853
AcoI	YGGCCR	2 cut(s)	69, 236
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	367, 729
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	3 cut(s)	348, 696, 818
AfiI	CCNNNNNNNGG	4 cut(s)	185, 313, 629, 779
AflIII	ACRYGT	1 cut(s)	697
AgeI	ACCGGT	1 cut(s)	798
AgsI	TTSAA	5 cut(s)	9, 167, 356, 831, 963
AjnI	CCWGG	2 cut(s)	110, 452
AluBI	AGCT	3 cut(s)	573, 639, 909
AluI	AGCT	3 cut(s)	573, 639, 909
Alw26I	GTCTC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	672
AoxI	GGCC	3 cut(s)	69, 236, 476
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	507
AsiGI	ACCGGT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	883
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	147, 434
AsuHPI	GGTGA	3 cut(s)	296, 672, 687
AvaII	GGWCC	2 cut(s)	147, 434
AvrII	CCTAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	743
BalI	TGGCCA	2 cut(s)	71, 238
BanI	GGYRCC	3 cut(s)	107, 297, 738
BanII	GRGCYC	1 cut(s)	765
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	717
BbvCI	CCTCAGC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	228, 309, 425
BciT130I	CCWGG	2 cut(s)	112, 454
BclI	TGATCA	1 cut(s)	677
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	3 cut(s)	465, 636, 726
BisI	GCNGC	2 cut(s)	388, 853
BlnI	CCTAGG	1 cut(s)	464
BlsI	GCNGC	2 cut(s)	389, 854
Bme1390I	CCNGG	2 cut(s)	112, 454
Bme18I	GGWCC	2 cut(s)	147, 434
BmgT120I	GGNCC	2 cut(s)	147, 434
BmiI	GGNNCC	3 cut(s)	109, 299, 740
BmrFI	CCNGG	2 cut(s)	112, 454
BmsI	GCATC	2 cut(s)	80, 678
BpiI	GAAGAC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	5 cut(s)	72, 308, 453, 464, 479
BsaWI	WCCGGW	1 cut(s)	798
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 313, 629, 779
Bse118I	RCCGGY	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	112, 454
BseDI	CCNNGG	5 cut(s)	72, 308, 453, 464, 479
BseGI	GGATG	2 cut(s)	609, 938
BseLI	CCNNNNNNNGG	4 cut(s)	185, 313, 629, 779
BseMII	CTCAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	399
BshFI	GGCC	3 cut(s)	71, 238, 478
BshNI	GGYRCC	3 cut(s)	107, 297, 738
BshTI	ACCGGT	1 cut(s)	798
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	185, 313, 629, 779
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	71, 238, 478
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	743, 765
Bsp143I	GATC	4 cut(s)	31, 472, 677, 789
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	1 cut(s)	853
BspANI	GGCC	3 cut(s)	71, 238, 478
BspCNI	CTCAG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	109, 299, 740
BspT107I	GGYRCC	3 cut(s)	107, 297, 738
BspTNI	GGTCTC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	798
BssAI	RCCGGY	1 cut(s)	798
BssECI	CCNNGG	5 cut(s)	72, 308, 453, 464, 479
BssMI	GATC	4 cut(s)	31, 472, 677, 789
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	4 cut(s)	72, 308, 464, 479
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	112, 454
Bst4CI	ACNGT	5 cut(s)	252, 282, 332, 416, 539
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	609, 938
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	4 cut(s)	34, 475, 680, 792
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	4 cut(s)	31, 472, 677, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 475, 769
BstNI	CCWGG	2 cut(s)	112, 454
BstNSI	RCATGY	2 cut(s)	557, 701
BstSCI	CCNGG	2 cut(s)	110, 452
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	71, 238, 478
BtgI	CCRYGG	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	609, 938
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	328, 393
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	672
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	798
Cfr13I	GGNCC	2 cut(s)	147, 434
Csp6I	GTAC	3 cut(s)	347, 695, 817
CspAI	ACCGGT	1 cut(s)	798
CviAII	CATG	9 cut(s)	84, 117, 180, 208, 309, 428, 497, 554, 698
CviQI	GTAC	3 cut(s)	347, 695, 817
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	4 cut(s)	33, 474, 679, 791
DpnII	GATC	4 cut(s)	31, 472, 677, 789
DraIII	CACNNNGTG	1 cut(s)	42
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
EaeI	YGGCCR	2 cut(s)	69, 236
Eco130I	CCWWGG	4 cut(s)	72, 308, 464, 479
Eco24I	GRGCYC	1 cut(s)	765
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	147, 434
Eco57I	CTGAAG	2 cut(s)	367, 729
EcoRII	CCWGG	2 cut(s)	110, 452
EcoT14I	CCWWGG	4 cut(s)	72, 308, 464, 479
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	4 cut(s)	72, 308, 464, 479
FaeI	CATG	9 cut(s)	87, 120, 183, 211, 312, 431, 500, 557, 701
FalI	AAGNNNNNCTT	2 cut(s)	930, 962
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	9 cut(s)	83, 116, 179, 207, 308, 427, 496, 553, 697
FbaI	TGATCA	1 cut(s)	677
Fnu4HI	GCNGC	2 cut(s)	388, 853
FokI	GGATG	2 cut(s)	596, 945
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	2 cut(s)	388, 853
FspBI	CTAG	3 cut(s)	465, 636, 726
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	2 cut(s)	388, 853
HaeIII	GGCC	3 cut(s)	71, 238, 478
HapII	CCGG	1 cut(s)	799
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	9 cut(s)	87, 120, 183, 211, 312, 431, 500, 557, 701
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HinfI	GANTC	3 cut(s)	526, 578, 827
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	3 cut(s)	296, 672, 687
Hpy166II	GTNNAC	3 cut(s)	248, 338, 419
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	1 cut(s)	831
Hpy8I	GTNNAC	3 cut(s)	248, 338, 419
Hpy99I	CGWCG	2 cut(s)	18, 693
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	5 cut(s)	252, 282, 332, 416, 539
HpyCH4V	TGCA	2 cut(s)	93, 137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 475, 769
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	9 cut(s)	87, 120, 183, 211, 312, 431, 500, 557, 701
HspAI	GCGC	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	677
Kzo9I	GATC	4 cut(s)	31, 472, 677, 789
LmnI	GCTCC	3 cut(s)	261, 428, 588
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	2 cut(s)	80, 678
MaeI	CTAG	3 cut(s)	465, 636, 726
MaeIII	GTNAC	4 cut(s)	228, 492, 533, 700
MalI	GATC	4 cut(s)	33, 474, 679, 791
MbiI	CCGCTC	1 cut(s)	855
MboI	GATC	4 cut(s)	31, 472, 677, 789
MboII	GAAGA	1 cut(s)	722
MhlI	GDGCHC	2 cut(s)	743, 765
MlsI	TGGCCA	2 cut(s)	71, 238
MluCI	AATT	5 cut(s)	507, 596, 756, 793, 889
MluNI	TGGCCA	2 cut(s)	71, 238
MlyI	GAGTC	2 cut(s)	520, 572
MmeI	TCCRAC	3 cut(s)	152, 170, 637
MnlI	CCTC	6 cut(s)	53, 134, 306, 359, 741, 910
Mox20I	TGGCCA	2 cut(s)	71, 238
MroXI	GAANNNNTTC	1 cut(s)	883
MscI	TGGCCA	2 cut(s)	71, 238
MslI	CAYNNNNRTG	3 cut(s)	88, 501, 552
Msp20I	TGGCCA	2 cut(s)	71, 238
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	2 cut(s)	112, 454
MvaI	CCWGG	2 cut(s)	112, 454
MwoI	GCNNNNNNNGC	3 cut(s)	387, 475, 769
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	4 cut(s)	31, 472, 677, 789
NlaIII	CATG	9 cut(s)	87, 120, 183, 211, 312, 431, 500, 557, 701
NlaIV	GGNNCC	3 cut(s)	109, 299, 740
NmuCI	GTSAC	2 cut(s)	492, 700
NspI	RCATGY	2 cut(s)	557, 701
PciI	ACATGT	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	1 cut(s)	827
PinAI	ACCGGT	1 cut(s)	798
PkrI	GCNGC	2 cut(s)	389, 854
PleI	GAGTC	2 cut(s)	520, 572
PpsI	GAGTC	2 cut(s)	520, 572
PscI	ACATGT	1 cut(s)	697
PsiI	TTATAA	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	110, 452
PspGI	CCWGG	2 cut(s)	110, 452
PspN4I	GGNNCC	3 cut(s)	109, 299, 740
PspPI	GGNCC	2 cut(s)	147, 434
PstNI	CAGNNNCTG	1 cut(s)	672
RsaI	GTAC	3 cut(s)	348, 696, 818
RsaNI	GTAC	3 cut(s)	347, 695, 817
RseI	CAYNNNNRTG	3 cut(s)	88, 501, 552
SatI	GCNGC	2 cut(s)	388, 853
Sau3AI	GATC	4 cut(s)	31, 472, 677, 789
Sau96I	GGNCC	2 cut(s)	147, 434
SchI	GAGTC	2 cut(s)	520, 572
ScrFI	CCNGG	2 cut(s)	112, 454
SduI	GDGCHC	2 cut(s)	743, 765
SfaNI	GCATC	2 cut(s)	80, 678
SinI	GGWCC	2 cut(s)	147, 434
SmiMI	CAYNNNNRTG	3 cut(s)	88, 501, 552
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
Sse9I	AATT	5 cut(s)	507, 596, 756, 793, 889
SsiI	CCGC	1 cut(s)	853
SspMI	CTAG	3 cut(s)	465, 636, 726
StyD4I	CCNGG	2 cut(s)	110, 452
StyI	CCWWGG	4 cut(s)	72, 308, 464, 479
TaaI	ACNGT	5 cut(s)	252, 282, 332, 416, 539
TaqI	TCGA	1 cut(s)	688
TasI	AATT	5 cut(s)	507, 596, 756, 793, 889
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	855
TfiI	GAWTC	1 cut(s)	827
TscAI	CASTG	2 cut(s)	335, 400
TseFI	GTSAC	2 cut(s)	492, 700
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	2 cut(s)	492, 700
TspDTI	ATGAA	4 cut(s)	147, 459, 642, 919
TspRI	CASTG	2 cut(s)	335, 400
VpaK11BI	GGWCC	2 cut(s)	147, 434
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	2 cut(s)	557, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XmaJI	CCTAGG	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	3 cut(s)	465, 636, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.