Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

68527700 .. 68553243

Gene Structure 25544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGCTTCGAAATTAGTACGGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTCCTATCGCCTTATAAATTTAACCGAAGGAATGTGCAAGCTGACGATGTTTCCGTAAAGATCACACATTGTGGAGTTTGTTATGCTGAGGTCGTTTGGCCAAGGAACAAATTTGGAGATGCAATCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCTAGGGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGCGACCATGTCGGAGTTGGAACCTATACCGATTCATGTAGAGACTGCGAGTATTGTAACGATGGCCAAGAAAATTACTGTGATAAAGAAGCAGTTTACACTTATAACCGTTTTGATTATGATGGTACAATTACCCAATGGACGATTCTCTACTTTCACTGTTATAATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGTATTACTGTTTACTCTCCCCTGATGGACCATAAGATGAACCAACCCGGGAAATCCCTAGGCATGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTTGGCAAGGCTTTCGGACTCAATGTCACTGTTTTCAGAAAAGATGAAGCTTTAACTGTGCTTGGGGCAGACAACTTCGTAGTCTCGTCTGATCAAGACCAAATGACAGCATTGGCTAAGTCACTTGACTTCATTATTGACACAGCATCTGGGAATCACCCGATTGAATTGTATATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTAGCCTTGTGGGTGTCCCAAGTGAAATTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

272

Amino Acids

29.68

Weight (kDa)

5.87

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 139	4.2e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	185 - 262	1.1e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	87, 378, 438
AccB1I	GGYRCC	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	2 cut(s)	54, 552
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	89, 182, 575
AcuI	CTGAAG	2 cut(s)	435, 782
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	19, 400
AgsI	TTSAA	2 cut(s)	268, 743
AhdI	GACNNNNNGTC	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	3 cut(s)	6, 113, 626
AluI	AGCT	3 cut(s)	6, 113, 626
Alw26I	GTCTC	2 cut(s)	309, 664
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	51, 170, 337, 544
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	3 cut(s)	89, 182, 575
AspA2I	CCTAGG	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	51, 248, 502
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuHPI	GGTGA	1 cut(s)	725
AsuII	TTCGAA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	248, 502
AvrII	CCTAGG	1 cut(s)	532
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	770
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	4 cut(s)	42, 329, 389, 493
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	522, 523
BcoDI	GTCTC	2 cut(s)	309, 664
BfaI	CTAG	4 cut(s)	239, 533, 779, 785
BisI	GCNGC	2 cut(s)	54, 456
BlnI	CCTAGG	1 cut(s)	532
BlsI	GCNGC	2 cut(s)	55, 457
Bme1390I	CCNGG	3 cut(s)	213, 522, 523
Bme18I	GGWCC	2 cut(s)	248, 502
BmeRI	GACNNNNNGTC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	51, 248, 502
BmiI	GGNNCC	2 cut(s)	210, 295
BmrFI	CCNGG	3 cut(s)	213, 522, 523
BmsI	GCATC	3 cut(s)	52, 181, 731
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	9
BpuMI	CCSGG	2 cut(s)	522, 523
BsaJI	CCNNGG	4 cut(s)	173, 521, 532, 547
BsaWI	WCCGGW	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	4 cut(s)	173, 521, 532, 547
BseGI	GGATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	467
BshFI	GGCC	4 cut(s)	53, 172, 339, 546
BshNI	GGYRCC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	69, 522
BslFI	GGGAC	1 cut(s)	784
BsmAI	GTCTC	2 cut(s)	309, 664
BsmFI	GGGAC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	53, 172, 339, 546
BsoBI	CYCGRG	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	132, 540, 667
BspACI	CCGC	2 cut(s)	54, 552
BspANI	GGCC	4 cut(s)	53, 172, 339, 546
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	210, 295
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	173, 521, 532, 547
BssMI	GATC	3 cut(s)	132, 540, 667
BssT1I	CCWWGG	3 cut(s)	173, 532, 547
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	6 cut(s)	353, 383, 434, 484, 607, 634
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	159, 693
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	135, 543, 670
BstMAI	GTCTC	2 cut(s)	309, 664
BstMBI	GATC	3 cut(s)	132, 540, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 455, 543
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	3 cut(s)	211, 520, 521
BstV1I	GCAGC	1 cut(s)	467
BstV2I	GAAGAC	1 cut(s)	770
BsuRI	GGCC	4 cut(s)	53, 172, 339, 546
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	3 cut(s)	430, 461, 603
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	3 cut(s)	51, 248, 502
Cfr9I	CCCGGG	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	18, 399
CviAII	CATG	5 cut(s)	218, 281, 309, 538, 565
CviQI	GTAC	2 cut(s)	18, 399
DdeI	CTNAG	2 cut(s)	159, 693
DpnI	GATC	3 cut(s)	134, 542, 669
DpnII	GATC	3 cut(s)	132, 540, 667
DraIII	CACNNNGTG	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	2 cut(s)	170, 337
Eam1105I	GACNNNNNGTC	1 cut(s)	599
Eco130I	CCWWGG	3 cut(s)	173, 532, 547
Eco47I	GGWCC	2 cut(s)	248, 502
Eco57I	CTGAAG	2 cut(s)	435, 782
Eco88I	CYCGRG	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	3 cut(s)	173, 532, 547
ErhI	CCWWGG	3 cut(s)	173, 532, 547
FaeI	CATG	5 cut(s)	221, 284, 312, 541, 568
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	5 cut(s)	217, 280, 308, 537, 564
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	54, 456
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	54, 456
FspBI	CTAG	4 cut(s)	239, 533, 779, 785
GluI	GCNGC	2 cut(s)	54, 456
HaeIII	GGCC	4 cut(s)	53, 172, 339, 546
HapII	CCGG	2 cut(s)	69, 522
Hin1II	CATG	5 cut(s)	221, 284, 312, 541, 568
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	5 cut(s)	72, 305, 418, 594, 730
HpaII	CCGG	2 cut(s)	69, 522
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	2 cut(s)	370, 487
Hpy188I	TCNGA	4 cut(s)	287, 593, 614, 667
Hpy188III	TCNNGA	2 cut(s)	69, 671
Hpy8I	GTNNAC	2 cut(s)	370, 487
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	6 cut(s)	353, 383, 434, 484, 607, 634
HpyCH4V	TGCA	2 cut(s)	109, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 455, 543
HpyF3I	CTNAG	2 cut(s)	159, 693
Hsp92II	CATG	5 cut(s)	221, 284, 312, 541, 568
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	132, 540, 667
LpnPI	CCDG	8 cut(s)	82, 198, 225, 459, 509, 535, 711, 756
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	3 cut(s)	52, 181, 731
MaeI	CTAG	4 cut(s)	239, 533, 779, 785
MaeIII	GTNAC	5 cut(s)	329, 560, 601, 696, 753
MalI	GATC	3 cut(s)	134, 542, 669
MboI	GATC	3 cut(s)	132, 540, 667
MboII	GAAGA	1 cut(s)	775
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	9 cut(s)	12, 89, 182, 346, 402, 575, 743, 809, 814
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	2 cut(s)	81, 588
MmeI	TCCRAC	2 cut(s)	265, 271
MnlI	CCTC	1 cut(s)	154
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	3 cut(s)	93, 629, 812
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	2 cut(s)	69, 522
MspR9I	CCNGG	3 cut(s)	213, 522, 523
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	62, 455, 543
NciI	CCSGG	2 cut(s)	522, 523
NdeII	GATC	3 cut(s)	132, 540, 667
NlaIII	CATG	5 cut(s)	221, 284, 312, 541, 568
NlaIV	GGNNCC	2 cut(s)	210, 295
NmuCI	GTSAC	4 cut(s)	560, 601, 696, 753
NspV	TTCGAA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	305, 418, 730
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	55, 457
PleI	GAGTC	2 cut(s)	80, 588
PpsI	GAGTC	2 cut(s)	80, 588
PsiI	TTATAA	3 cut(s)	87, 378, 438
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	210, 295
PspPI	GGNCC	3 cut(s)	51, 248, 502
PstNI	CAGNNNCTG	1 cut(s)	725
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	19, 400
RsaNI	GTAC	2 cut(s)	18, 399
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	93, 629, 812
SatI	GCNGC	2 cut(s)	54, 456
Sau3AI	GATC	3 cut(s)	132, 540, 667
Sau96I	GGNCC	3 cut(s)	51, 248, 502
SchI	GAGTC	2 cut(s)	81, 588
ScrFI	CCNGG	3 cut(s)	213, 522, 523
SetI	ASST	5 cut(s)	8, 115, 165, 299, 628
SfaNI	GCATC	3 cut(s)	52, 181, 731
SfuI	TTCGAA	1 cut(s)	9
SinI	GGWCC	2 cut(s)	248, 502
SmaI	CCCGGG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	9 cut(s)	12, 89, 182, 346, 402, 575, 743, 809, 814
SsiI	CCGC	2 cut(s)	54, 552
SspMI	CTAG	4 cut(s)	239, 533, 779, 785
StyD4I	CCNGG	3 cut(s)	211, 520, 521
StyI	CCWWGG	3 cut(s)	173, 532, 547
TaaI	ACNGT	6 cut(s)	353, 383, 434, 484, 607, 634
TaqI	TCGA	1 cut(s)	9
TasI	AATT	9 cut(s)	12, 89, 182, 346, 402, 575, 743, 809, 814
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	305, 418, 730
Tru1I	TTAA	3 cut(s)	93, 629, 812
Tru9I	TTAA	3 cut(s)	93, 629, 812
TscAI	CASTG	3 cut(s)	437, 468, 610
TseFI	GTSAC	4 cut(s)	560, 601, 696, 753
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	4 cut(s)	560, 601, 696, 753
TspDTI	ATGAA	5 cut(s)	248, 297, 527, 636, 697
TspGWI	ACGGA	1 cut(s)	115
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	3 cut(s)	437, 468, 610
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	248, 502
XapI	RAATTY	3 cut(s)	89, 182, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaI	CCCGGG	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	532
XspI	CTAG	4 cut(s)	239, 533, 779, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.