Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

8571026 .. 8572221

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g11040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTGCCTGGACACGAGATCGCTGGCATTGTTCAAGAGGTTGGTCCAAATGTTCACGGCTTCAAAGTTGGTGATCATGTTGGAGTGGGAATTTTTGTTAATTCTTGCAGAGATTGCGACTATTGTAGAGATGGCCAAGAGATTTCCTGTGAAAAGGGAACTGTTGGCAGTTATAACCGTGTTGATACCGATGGCATGATTACAAAAGGAGGGTTTTCCAGTTACATTGTTGCTCATGAAAGGTACTGCTTCAAGATACCAGAGGGCTACCCCTTGGCTTCTGCAGCACCTCTGCTTTGCGCCGGCATTACTGTTTATGCTCCAATGATCCGCCATAAAATGAACCAGGCCCGAAAATCACTGGGTGTGATTGGCCTTGGTGGTCTCGGTCACTTGGCAGTGAAATTTGGGAAGGCGTTCGGACTAACCGTGACAGTTTTCAGCACAAGCTTATCAAAGAAAGAGGAAGCTCTAACTCTGCTAGGTGCAGACAATTTCGTTGTCCCATCCAACCAAGAGAAAATGACGGCCCTGGCTAAGTCACTTGACTTCGTCATCGACACAGCATCTGGTGATCATCCAGTCGATTCATATATGTCTCTGCTGAAGACTGCTGGTGTTCTAGTCTTGGTTGGGGTACCAAGTGAAGTTAAATTAAGTCCCTTGAGCTTGATTATTGGTATGTTAACACTTTTAATACTCACAACTTTCTTTTTTAAGACAAGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

244

Amino Acids

25.93

Weight (kDa)

7.64

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	2 cut(s)	4, 637
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	90, 404, 726
AcuI	CTGAAG	1 cut(s)	626
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	245, 639
AgsI	TTSAA	3 cut(s)	35, 64, 253
AjnI	CCWGG	3 cut(s)	7, 345, 531
AluBI	AGCT	3 cut(s)	450, 470, 669
AluI	AGCT	3 cut(s)	450, 470, 669
Alw26I	GTCTC	2 cut(s)	389, 603
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	4 cut(s)	133, 348, 373, 528
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	3 cut(s)	90, 404, 726
Asp700I	GAANNNNTTC	1 cut(s)	416
Asp718I	GGTACC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	44, 349, 529
AsuHPI	GGTGA	2 cut(s)	83, 584
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	135
BanI	GGYRCC	2 cut(s)	4, 637
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	3 cut(s)	125, 185, 514
BceAI	ACGGC	2 cut(s)	73, 543
BciT130I	CCWGG	3 cut(s)	9, 347, 533
BclI	TGATCA	2 cut(s)	73, 574
BcoDI	GTCTC	2 cut(s)	389, 603
BfaI	CTAG	2 cut(s)	482, 623
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	3 cut(s)	9, 347, 533
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	3 cut(s)	44, 349, 529
BmiI	GGNNCC	2 cut(s)	6, 639
BmrFI	CCNGG	3 cut(s)	9, 347, 533
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	685
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	273, 376, 531
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	219, 366, 581
BseBI	CCWGG	3 cut(s)	9, 347, 533
BseDI	CCNNGG	3 cut(s)	273, 376, 531
BseGI	GGATG	2 cut(s)	506, 577
BseNI	ACTGG	3 cut(s)	219, 366, 581
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	4 cut(s)	135, 350, 375, 530
BshNI	GGYRCC	2 cut(s)	4, 637
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	488, 645
BsmAI	GTCTC	2 cut(s)	389, 603
BsmFI	GGGAC	2 cut(s)	488, 645
BsnI	GGCC	4 cut(s)	135, 350, 375, 530
Bso31I	GGTCTC	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	18, 73, 327, 574
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	4 cut(s)	135, 350, 375, 530
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	6, 639
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	2 cut(s)	4, 637
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	219, 366, 581
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	273, 376, 531
BssMI	GATC	4 cut(s)	18, 73, 327, 574
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	2 cut(s)	273, 376
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	3 cut(s)	9, 347, 533
Bst4CI	ACNGT	5 cut(s)	163, 179, 313, 430, 436
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	25, 304
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	506, 577
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	21, 76, 330, 577
BstMAI	GTCTC	2 cut(s)	389, 603
BstMBI	GATC	4 cut(s)	18, 73, 327, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 284
BstNI	CCWGG	3 cut(s)	9, 347, 533
BstSCI	CCNGG	3 cut(s)	7, 345, 531
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	614
BsuRI	GGCC	4 cut(s)	135, 350, 375, 530
BtsCI	GGATG	2 cut(s)	506, 577
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	359, 405
Cac8I	GCNNGC	2 cut(s)	25, 304
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	44, 349, 529
Csp6I	GTAC	2 cut(s)	244, 638
CviAII	CATG	3 cut(s)	77, 196, 236
CviQI	GTAC	2 cut(s)	244, 638
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	4 cut(s)	20, 75, 329, 576
DpnII	GATC	4 cut(s)	18, 73, 327, 574
DraIII	CACNNNGTG	1 cut(s)	365
EaeI	YGGCCR	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	273, 376
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	7, 345, 531
EcoT14I	CCWWGG	2 cut(s)	273, 376
ErhI	CCWWGG	2 cut(s)	273, 376
FaeI	CATG	3 cut(s)	80, 199, 239
FaqI	GGGAC	2 cut(s)	488, 645
FatI	CATG	3 cut(s)	76, 195, 235
FbaI	TGATCA	2 cut(s)	73, 574
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	493, 564
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	482, 623
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	135, 350, 375, 530
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	80, 199, 239
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	1 cut(s)	587
HpaI	GTTAAC	1 cut(s)	687
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	83, 584
Hpy166II	GTNNAC	2 cut(s)	55, 687
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	3 cut(s)	35, 236, 253
Hpy8I	GTNNAC	2 cut(s)	55, 687
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	5 cut(s)	163, 179, 313, 430, 436
HpyCH4V	TGCA	3 cut(s)	108, 284, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 284
HpyF3I	CTNAG	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	80, 199, 239
HspAI	GCGC	1 cut(s)	300
KpnI	GGTACC	1 cut(s)	641
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	73, 574
KspAI	GTTAAC	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	18, 73, 327, 574
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	2 cut(s)	482, 623
MaeIII	GTNAC	4 cut(s)	221, 389, 430, 540
MalI	GATC	4 cut(s)	20, 75, 329, 576
MboI	GATC	4 cut(s)	18, 73, 327, 574
MboII	GAAGA	1 cut(s)	619
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	90, 100, 404, 493, 653, 726
MluNI	TGGCCA	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	61, 534
MnlI	CCTC	5 cut(s)	31, 203, 256, 300, 457
Mox20I	TGGCCA	1 cut(s)	135
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	6 cut(s)	99, 651, 656, 686, 695, 717
Msp20I	TGGCCA	1 cut(s)	135
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	9, 347, 533
MvaI	CCWGG	3 cut(s)	9, 347, 533
MwoI	GCNNNNNNNGC	2 cut(s)	114, 284
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	4 cut(s)	18, 73, 327, 574
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	80, 199, 239
NlaIV	GGNNCC	2 cut(s)	6, 639
NmuCI	GTSAC	3 cut(s)	389, 430, 540
PagI	TCATGA	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	587
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	174
Psp6I	CCWGG	3 cut(s)	7, 345, 531
PspGI	CCWGG	3 cut(s)	7, 345, 531
PspN4I	GGNNCC	2 cut(s)	6, 639
PspPI	GGNCC	3 cut(s)	44, 349, 529
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	569
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	2 cut(s)	245, 639
RsaNI	GTAC	2 cut(s)	244, 638
SaqAI	TTAA	6 cut(s)	99, 651, 656, 686, 695, 717
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	18, 73, 327, 574
Sau96I	GGNCC	3 cut(s)	44, 349, 529
ScrFI	CCNGG	3 cut(s)	9, 347, 533
SetI	ASST	7 cut(s)	42, 245, 292, 452, 472, 487, 671
SfaNI	GCATC	1 cut(s)	575
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	6 cut(s)	90, 100, 404, 493, 653, 726
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	482, 623
StyD4I	CCNGG	3 cut(s)	7, 345, 531
StyI	CCWWGG	2 cut(s)	273, 376
TaaI	ACNGT	5 cut(s)	163, 179, 313, 430, 436
TaqI	TCGA	2 cut(s)	558, 585
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	6 cut(s)	90, 100, 404, 493, 653, 726
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	6 cut(s)	99, 651, 656, 686, 695, 717
Tru9I	TTAA	6 cut(s)	99, 651, 656, 686, 695, 717
TscAI	CASTG	2 cut(s)	366, 405
TseFI	GTSAC	3 cut(s)	389, 430, 540
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	3 cut(s)	389, 430, 540
TspDTI	ATGAA	3 cut(s)	252, 356, 579
TspRI	CASTG	2 cut(s)	366, 405
Tth111I	GACNNNGTC	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	3 cut(s)	90, 404, 726
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	482, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.