Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

69376186 .. 69377940

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGCTTCGAAATTAGTACAGCAAATGGAAATGGGAACTGCTTGGGATGGGGCGCAAGAGATGCTTCCGGAGTCCTATCGCCTTATAAATTTAACCAAACGAATGTTCAAGCTGACGATGTTTCCGTAAAGATCACACATTGTGGAGTTTGTTATGCTGAGGTCGTTTGGCCAAGGAACAAATTTGGAGATGCAATCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGCGACCATGTCGGAGTTGGAACCTATACCGACTCATGTAGAGACTGCGAGTATTGTAACGATGGCCAAGAAAATTACTGTGATAAAGAAGCAGTTTACACTTGCAACCGTTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGCAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGTTAACTGTTTTCAGCACAAGTATGTCAAAGAAAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCAAGACCAAATGAAGGCGCAGGCTAAGTCACTTGACTTTATCATTGACACGGCATCTGGAAATCACCCAATTGACCTTATCATTTTCATGTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

260

Amino Acids

27.94

Weight (kDa)

5.54

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 152	2.4e-22	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	184 - 247	1.1e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AasI	GACNNNNNNGTC	1 cut(s)	665
AccB1I	GGYRCC	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	1 cut(s)	549
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	89, 182, 572
AcuI	CTGAAG	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	19, 400
AfiI	CCNNNNNNNGG	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	110, 268
AjnI	CCWGG	2 cut(s)	211, 517
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	6, 113, 638
AluI	AGCT	3 cut(s)	6, 113, 638
Alw26I	GTCTC	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	3 cut(s)	170, 337, 541
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	3 cut(s)	89, 182, 572
AspA2I	CCTAGG	1 cut(s)	529
AspLEI	GCGC	2 cut(s)	56, 700
AspS9I	GGNCC	2 cut(s)	248, 499
AsuHPI	GGTGA	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	248, 499
AvrII	CCTAGG	1 cut(s)	529
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	4 cut(s)	42, 329, 389, 490
BceAI	ACGGC	1 cut(s)	747
BciT130I	CCWGG	2 cut(s)	213, 519
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	1 cut(s)	530
BisI	GCNGC	1 cut(s)	453
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	213, 519
Bme18I	GGWCC	2 cut(s)	248, 499
BmgT120I	GGNCC	2 cut(s)	248, 499
BmiI	GGNNCC	2 cut(s)	210, 295
BmrFI	CCNGG	2 cut(s)	213, 519
BmsI	GCATC	3 cut(s)	52, 181, 743
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	578
BsaJI	CCNNGG	4 cut(s)	173, 409, 529, 544
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	213, 519
BseDI	CCNNGG	4 cut(s)	173, 409, 529, 544
BseGI	GGATG	2 cut(s)	53, 674
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	172, 339, 543
BshNI	GGYRCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	172, 339, 543
Bsp119I	TTCGAA	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	132, 537
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	3 cut(s)	172, 339, 543
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	210, 295
BspT104I	TTCGAA	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	208
BssECI	CCNNGG	4 cut(s)	173, 409, 529, 544
BssMI	GATC	2 cut(s)	132, 537
BssT1I	CCWWGG	4 cut(s)	173, 409, 529, 544
Bst2UI	CCWGG	2 cut(s)	213, 519
Bst4CI	ACNGT	5 cut(s)	353, 383, 433, 481, 604
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	472, 702
BstDEI	CTNAG	2 cut(s)	159, 705
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	53, 674
BstHHI	GCGC	2 cut(s)	56, 700
BstKTI	GATC	2 cut(s)	135, 540
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	2 cut(s)	132, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 452, 540
BstNI	CCWGG	2 cut(s)	213, 519
BstSCI	CCNGG	2 cut(s)	211, 517
BstV1I	GCAGC	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	172, 339, 543
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	53, 674
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	429, 458
Cac8I	GCNNGC	2 cut(s)	472, 702
CfoI	GCGC	2 cut(s)	56, 700
Cfr13I	GGNCC	2 cut(s)	248, 499
Csp6I	GTAC	2 cut(s)	18, 399
CviAII	CATG	7 cut(s)	218, 281, 309, 410, 493, 562, 769
CviQI	GTAC	2 cut(s)	18, 399
DdeI	CTNAG	2 cut(s)	159, 705
DpnI	GATC	2 cut(s)	134, 539
DpnII	GATC	2 cut(s)	132, 537
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	665
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	2 cut(s)	170, 337
Eco130I	CCWWGG	4 cut(s)	173, 409, 529, 544
Eco47I	GGWCC	2 cut(s)	248, 499
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	211, 517
EcoT14I	CCWWGG	4 cut(s)	173, 409, 529, 544
ErhI	CCWWGG	4 cut(s)	173, 409, 529, 544
FaeI	CATG	7 cut(s)	221, 284, 312, 413, 496, 565, 772
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	7 cut(s)	217, 280, 308, 409, 492, 561, 768
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	60, 661
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	530
GlaI	GCGC	2 cut(s)	55, 699
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	3 cut(s)	172, 339, 543
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	56, 700
Hin1II	CATG	7 cut(s)	221, 284, 312, 413, 496, 565, 772
Hin6I	GCGC	2 cut(s)	54, 698
HinP1I	GCGC	2 cut(s)	54, 698
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	5 cut(s)	72, 305, 417, 591, 643
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	3 cut(s)	370, 484, 600
Hpy188I	TCNGA	2 cut(s)	287, 642
Hpy188III	TCNNGA	2 cut(s)	69, 738
Hpy8I	GTNNAC	3 cut(s)	370, 484, 600
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	5 cut(s)	353, 383, 433, 481, 604
HpyCH4V	TGCA	3 cut(s)	194, 238, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 452, 540
HpyF3I	CTNAG	2 cut(s)	159, 705
Hsp92II	CATG	7 cut(s)	221, 284, 312, 413, 496, 565, 772
HspAI	GCGC	2 cut(s)	54, 698
Kpn2I	TCCGGA	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	132, 537
LmnI	GCTCC	1 cut(s)	653
LpnPI	CCDG	8 cut(s)	82, 198, 225, 456, 504, 531, 686, 723
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	3 cut(s)	52, 181, 743
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	3 cut(s)	329, 557, 708
MalI	GATC	2 cut(s)	134, 539
MboI	GATC	2 cut(s)	132, 537
MfeI	CAATTG	1 cut(s)	750
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	8 cut(s)	12, 89, 182, 346, 402, 572, 661, 750
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	4 cut(s)	81, 299, 585, 637
MmeI	TCCRAC	3 cut(s)	265, 271, 702
MnlI	CCTC	3 cut(s)	154, 235, 407
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	3 cut(s)	93, 599, 778
MslI	CAYNNNNRTG	3 cut(s)	566, 617, 767
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	213, 519
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	2 cut(s)	213, 519
MwoI	GCNNNNNNNGC	3 cut(s)	62, 452, 540
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	132, 537
NlaIII	CATG	7 cut(s)	221, 284, 312, 413, 496, 565, 772
NlaIV	GGNNCC	2 cut(s)	210, 295
NmuCI	GTSAC	2 cut(s)	557, 708
NspV	TTCGAA	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	417
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	4 cut(s)	80, 299, 585, 637
PpsI	GAGTC	4 cut(s)	80, 299, 585, 637
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	211, 517
PspGI	CCWGG	2 cut(s)	211, 517
PspN4I	GGNNCC	2 cut(s)	210, 295
PspPI	GGNCC	2 cut(s)	248, 499
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	19, 400
RsaNI	GTAC	2 cut(s)	18, 399
RseI	CAYNNNNRTG	3 cut(s)	566, 617, 767
SaqAI	TTAA	3 cut(s)	93, 599, 778
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	2 cut(s)	132, 537
Sau96I	GGNCC	2 cut(s)	248, 499
SchI	GAGTC	4 cut(s)	81, 299, 585, 637
ScrFI	CCNGG	2 cut(s)	213, 519
SetI	ASST	8 cut(s)	8, 115, 165, 246, 299, 520, 640, 759
SfaNI	GCATC	3 cut(s)	52, 181, 743
SfuI	TTCGAA	1 cut(s)	9
SinI	GGWCC	2 cut(s)	248, 499
SmiMI	CAYNNNNRTG	3 cut(s)	566, 617, 767
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	8 cut(s)	12, 89, 182, 346, 402, 572, 661, 750
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	211, 517
StyI	CCWWGG	4 cut(s)	173, 409, 529, 544
TaaI	ACNGT	5 cut(s)	353, 383, 433, 481, 604
TaqI	TCGA	1 cut(s)	9
TasI	AATT	8 cut(s)	12, 89, 182, 346, 402, 572, 661, 750
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	3 cut(s)	93, 599, 778
Tru9I	TTAA	3 cut(s)	93, 599, 778
TscAI	CASTG	2 cut(s)	436, 465
TseFI	GTSAC	2 cut(s)	557, 708
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	2 cut(s)	557, 708
TspDTI	ATGAA	4 cut(s)	248, 524, 707, 757
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	436, 465
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	248, 499
XapI	RAATTY	3 cut(s)	89, 182, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.