Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

23475020 .. 23477701

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1142100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATTGGAAGATTACGAGATCTTCGTTGGAGGTGGTTGATTTTTCACTATAAATACAAGACAAGGAACTCTCCGGAGAGCAAAAACAAAAGTGATCTCTCTCTTGTTTGCTGCTCCGACGGCGCAAATGAGAACTGCGTTGGATATGCTGCAAGGGATCCATCTGGAGTTCTATCCCATTACAAATTCAACCGCAGGGCTCTTGGGGCTGACGATGTTTCCATAAGAATTACTCACTGCGGAGTTTGTTATGCTGATGTGATTTGGTCAAGAAATAAACATGGAGATTCGAAGTATCCTTTGGTTCCTGGACATGAGATTGCCGGTGTTGTAAAAGAGGTTGGTTCAAATTGTCATCGCTTCAAAGTTGGCGACCATGTTGGAGTGGGAACTTATGTCAACTCATGCCGTGATTGTGAGTATTGTAATGAGGGACTTGAAGTCGACTGCGTAAAGGGTTCAGTTTACACTTTCAATGCTGTTGATGCGGATGGTACAATTACAAAAGGAGGATACTCCAGTCACATAGTTGTCCATGAAAGATACTGCTTCAAGATACCTGACAACTATCCCTTGGCTTCAGCAGCACCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCTATGAAGCGCCATAAGATGAACCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGTGGTCTTGGTCACATGGCAGTGAAGTTTGGCAAGGCATTTGGTTTAAATGTAACAGTTTTTAGCACAAGCATATCCAAGAAAGAGGAAGCTCTAAGCCAACTTGGTGCTGATAAATTTGTCGTTTCATCCGACCAAAAGCAGATGGCGTCACTGGTGAAGTCATTTGACTTCCTAATTGATACAGCATCTGGTGATCACCCATTTGATCCATATATGGCATTGTTGAAGACGGGCGGAACTCTGGCCTTGGTGGGATTCCCAAGTGAAGTTAAATTCAGTCCTGCAAGCCTTAATCTGGGGATGAAATCCATTTCTGGCAGTGTAACAGGCGGAACAAAGGACACGCAAGAAATGATTGATTTCTGTGCGGCTCAGGGAATTCACCCAATGATTGAAATAATTCCAATTCAATATGCAACTGAAGCGCTCGAGAGGCTAGTGAAGAAAGAGGTGAAGTACCGGTTTGTGATCGATATTGAAAGCTCCCTGATGGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

394

Amino Acids

42.95

Weight (kDa)

8.31

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	69 - 188	3.5e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	228 - 350	2.5e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	6 cut(s)	193, 240, 488, 915, 1011, 1049
AclWI	GGATC	3 cut(s)	152, 165, 881
AcsI	RAATTY	4 cut(s)	185, 794, 953, 1059
AcuI	CTGAAG	2 cut(s)	564, 1122
AcyI	GRCGYC	1 cut(s)	827
AfaI	GTAC	2 cut(s)	496, 1139
AfeI	AGCGCT	1 cut(s)	1107
AfiI	CCNNNNNNNGG	1 cut(s)	976
AgeI	ACCGGT	1 cut(s)	1140
AhdI	GACNNNNNGTC	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	307, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	770, 1164
AluI	AGCT	2 cut(s)	770, 1164
AlwI	GGATC	3 cut(s)	152, 165, 881
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	1109
Aor13HI	TCCGGA	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	1107
AoxI	GGCC	1 cut(s)	924
ApeKI	GCWGC	3 cut(s)	111, 149, 584
ApoI	RAATTY	4 cut(s)	185, 794, 953, 1059
AsiGI	ACCGGT	1 cut(s)	1140
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspLEI	GCGC	3 cut(s)	125, 633, 1108
AsuHPI	GGTGA	5 cut(s)	847, 869, 884, 1055, 1144
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	1109
BaeI	ACNNNNGTAYC	2 cut(s)	505, 538
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	3 cut(s)	98, 136, 596
BccI	CCATC	4 cut(s)	169, 485, 817, 1165
BceAI	ACGGC	2 cut(s)	136, 393
BciT130I	CCWGG	2 cut(s)	309, 651
BciVI	GTATCC	3 cut(s)	306, 506, 1168
BclI	TGATCA	1 cut(s)	874
BfaI	CTAG	2 cut(s)	662, 1118
BfoI	RGCGCY	2 cut(s)	634, 1109
BfuI	GTATCC	3 cut(s)	306, 506, 1168
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	112, 150, 585, 1050
BlsI	GCNGC	4 cut(s)	113, 151, 586, 1051
Bme1390I	CCNGG	2 cut(s)	309, 651
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	1109
BmiI	GGNNCC	2 cut(s)	159, 306
BmrFI	CCNGG	2 cut(s)	309, 651
BmsI	GCATC	2 cut(s)	475, 875
BpiI	GAAGAC	1 cut(s)	914
BpmI	CTGGAG	2 cut(s)	186, 502
Bpu10I	CCTNAGC	1 cut(s)	1053
Bpu14I	TTCGAA	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	1152
BsaHI	GRCGYC	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	573, 927
BsaWI	WCCGGW	2 cut(s)	73, 1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	976
Bse118I	RCCGGY	2 cut(s)	323, 1140
Bse1I	ACTGG	2 cut(s)	519, 837
BseAI	TCCGGA	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	309, 651
BseCI	ATCGAT	1 cut(s)	1152
BseDI	CCNNGG	2 cut(s)	573, 927
BseGI	GGATG	3 cut(s)	496, 806, 987
BseLI	CCNNNNNNNGG	1 cut(s)	976
BseMII	CTCAG	1 cut(s)	1067
BseNI	ACTGG	2 cut(s)	519, 837
BseXI	GCAGC	3 cut(s)	98, 136, 596
BshFI	GGCC	1 cut(s)	926
BshTI	ACCGGT	1 cut(s)	1140
BshVI	ATCGAT	1 cut(s)	1152
BsiHKCI	CYCGRG	1 cut(s)	1109
BsiSI	CCGG	3 cut(s)	74, 324, 1141
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	976
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	926
BsoBI	CYCGRG	1 cut(s)	1109
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
BspACI	CCGC	6 cut(s)	193, 240, 488, 915, 1011, 1049
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	1 cut(s)	1066
BspDI	ATCGAT	1 cut(s)	1152
BspEI	TCCGGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	159, 306
BspPI	GGATC	3 cut(s)	152, 165, 881
BspT104I	TTCGAA	1 cut(s)	290
BsrFI	RCCGGY	2 cut(s)	323, 1140
BsrI	ACTGG	2 cut(s)	519, 837
BssAI	RCCGGY	2 cut(s)	323, 1140
BssECI	CCNNGG	2 cut(s)	573, 927
BssMI	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
BssNI	GRCGYC	1 cut(s)	827
BssT1I	CCWWGG	2 cut(s)	573, 927
Bst2UI	CCWGG	2 cut(s)	309, 651
Bst4CI	ACNGT	2 cut(s)	613, 736
BstACI	GRCGYC	1 cut(s)	827
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	967
BstDEI	CTNAG	2 cut(s)	773, 1053
BstF5I	GGATG	3 cut(s)	496, 806, 987
BstH2I	RGCGCY	2 cut(s)	634, 1109
BstHHI	GCGC	3 cut(s)	125, 633, 1108
BstKTI	GATC	6 cut(s)	22, 97, 160, 877, 889, 1152
BstMBI	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 206, 485, 584, 1103, 1114
BstNI	CCWGG	2 cut(s)	309, 651
BstSCI	CCNGG	2 cut(s)	307, 649
BstV1I	GCAGC	3 cut(s)	98, 136, 596
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	2 cut(s)	19, 157
BstYI	RGATCY	2 cut(s)	19, 157
Bsu15I	ATCGAT	1 cut(s)	1152
BsuI	GTATCC	3 cut(s)	306, 506, 1168
BsuRI	GGCC	1 cut(s)	926
BsuTUI	ATCGAT	1 cut(s)	1152
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	496, 806, 987
BtsI	GCAGTG	3 cut(s)	235, 705, 1006
BtsIMutI	CAGTG	4 cut(s)	235, 705, 830, 1006
Cac8I	GCNNGC	1 cut(s)	967
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	3 cut(s)	125, 633, 1108
Cfr10I	RCCGGY	2 cut(s)	323, 1140
ClaI	ATCGAT	1 cut(s)	1152
CseI	GACGC	1 cut(s)	816
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	2 cut(s)	495, 1138
CspAI	ACCGGT	1 cut(s)	1140
CviAII	CATG	6 cut(s)	281, 314, 377, 405, 536, 694
CviQI	GTAC	2 cut(s)	495, 1138
DdeI	CTNAG	2 cut(s)	773, 1053
DpnI	GATC	6 cut(s)	21, 96, 159, 876, 888, 1151
DpnII	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
DraI	TTTAAA	1 cut(s)	726
DriI	GACNNNNNGTC	1 cut(s)	440
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EciI	GGCGGA	2 cut(s)	930, 1026
Eco130I	CCWWGG	2 cut(s)	573, 927
Eco24I	GRGCYC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	1107
Eco57I	CTGAAG	2 cut(s)	564, 1122
Eco88I	CYCGRG	1 cut(s)	1109
EcoRI	GAATTC	1 cut(s)	1059
EcoRII	CCWGG	2 cut(s)	307, 649
EcoT14I	CCWWGG	2 cut(s)	573, 927
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	573, 927
FaeI	CATG	6 cut(s)	284, 317, 380, 408, 539, 697
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	6 cut(s)	280, 313, 376, 404, 535, 693
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	112, 150, 585, 1050
FokI	GGATG	3 cut(s)	503, 793, 994
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	112, 150, 585, 1050
FspBI	CTAG	2 cut(s)	662, 1118
GlaI	GCGC	3 cut(s)	124, 632, 1107
GluI	GCNGC	4 cut(s)	112, 150, 585, 1050
GsuI	CTGGAG	2 cut(s)	186, 502
HaeII	RGCGCY	2 cut(s)	634, 1109
HaeIII	GGCC	1 cut(s)	926
HapII	CCGG	3 cut(s)	74, 324, 1141
HgaI	GACGC	1 cut(s)	816
HhaI	GCGC	3 cut(s)	125, 633, 1108
Hin1I	GRCGYC	1 cut(s)	827
Hin1II	CATG	6 cut(s)	284, 317, 380, 408, 539, 697
Hin6I	GCGC	3 cut(s)	123, 631, 1106
HinP1I	GCGC	3 cut(s)	123, 631, 1106
HincII	GTYRAC	2 cut(s)	400, 445
HindII	GTYRAC	2 cut(s)	400, 445
HinfI	GANTC	2 cut(s)	287, 936
HpaII	CCGG	3 cut(s)	74, 324, 1141
HphI	GGTGA	5 cut(s)	847, 869, 884, 1055, 1144
Hpy166II	GTNNAC	3 cut(s)	400, 445, 466
Hpy188I	TCNGA	2 cut(s)	118, 811
Hpy188III	TCNNGA	5 cut(s)	74, 165, 270, 553, 1111
Hpy8I	GTNNAC	3 cut(s)	400, 445, 466
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	613, 736
HpyCH4V	TGCA	3 cut(s)	152, 965, 1097
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 206, 485, 584, 1103, 1114
HpyF3I	CTNAG	2 cut(s)	773, 1053
Hsp92I	GRCGYC	1 cut(s)	827
Hsp92II	CATG	6 cut(s)	284, 317, 380, 408, 539, 697
HspAI	GCGC	3 cut(s)	123, 631, 1106
Kpn2I	TCCGGA	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
LmnI	GCTCC	3 cut(s)	119, 625, 1169
Lsp1109I	GCAGC	3 cut(s)	98, 136, 596
LweI	GCATC	2 cut(s)	475, 875
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	2 cut(s)	662, 1118
MaeIII	GTNAC	5 cut(s)	521, 689, 730, 828, 1003
MalI	GATC	6 cut(s)	21, 96, 159, 876, 888, 1151
MboI	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
MboII	GAAGA	4 cut(s)	14, 21, 919, 1135
MflI	RGATCY	2 cut(s)	19, 157
MhlI	GDGCHC	1 cut(s)	202
MmeI	TCCRAC	5 cut(s)	8, 121, 141, 361, 834
MnlI	CCTC	7 cut(s)	24, 331, 424, 503, 757, 1107, 1123
MroI	TCCGGA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	3 cut(s)	725, 951, 972
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	3 cut(s)	74, 324, 1141
MspR9I	CCNGG	2 cut(s)	309, 651
MvaI	CCWGG	2 cut(s)	309, 651
MwoI	GCNNNNNNNGC	6 cut(s)	120, 206, 485, 584, 1103, 1114
NdeII	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
NlaIII	CATG	6 cut(s)	284, 317, 380, 408, 539, 697
NlaIV	GGNNCC	2 cut(s)	159, 306
NmuCI	GTSAC	3 cut(s)	521, 689, 828
NspV	TTCGAA	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	1109
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 807
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	2 cut(s)	287, 936
PfoI	TCCNGGA	1 cut(s)	307
PinAI	ACCGGT	1 cut(s)	1140
PkrI	GCNGC	4 cut(s)	113, 151, 586, 1051
Psp6I	CCWGG	2 cut(s)	307, 649
PspGI	CCWGG	2 cut(s)	307, 649
PspN4I	GGNNCC	2 cut(s)	159, 306
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	19, 157
RsaI	GTAC	2 cut(s)	496, 1139
RsaNI	GTAC	2 cut(s)	495, 1138
RseI	CAYNNNNRTG	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	725, 951, 972
SatI	GCNGC	4 cut(s)	112, 150, 585, 1050
Sau3AI	GATC	6 cut(s)	19, 94, 157, 874, 886, 1149
ScrFI	CCNGG	2 cut(s)	309, 651
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	35, 342, 562, 592, 652, 772, 1134, 1166
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	2 cut(s)	475, 875
Sfr274I	CTCGAG	1 cut(s)	1109
SfuI	TTCGAA	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	1109
SmiMI	CAYNNNNRTG	1 cut(s)	698
SmlI	CTYRAG	1 cut(s)	1109
SmoI	CTYRAG	1 cut(s)	1109
SsiI	CCGC	6 cut(s)	193, 240, 488, 915, 1011, 1049
SspMI	CTAG	2 cut(s)	662, 1118
StyD4I	CCNGG	2 cut(s)	307, 649
StyI	CCWWGG	2 cut(s)	573, 927
TaaI	ACNGT	2 cut(s)	613, 736
TaqI	TCGA	4 cut(s)	290, 444, 1110, 1152
TauI	GCSGC	1 cut(s)	1052
TfiI	GAWTC	2 cut(s)	287, 936
Tru1I	TTAA	3 cut(s)	725, 951, 972
Tru9I	TTAA	3 cut(s)	725, 951, 972
TscAI	CASTG	4 cut(s)	242, 705, 837, 1006
TseFI	GTSAC	3 cut(s)	521, 689, 828
TseI	GCWGC	3 cut(s)	111, 149, 584
Tsp45I	GTSAC	3 cut(s)	521, 689, 828
TspDTI	ATGAA	5 cut(s)	552, 641, 656, 795, 998
TspRI	CASTG	4 cut(s)	242, 705, 837, 1006
XapI	RAATTY	4 cut(s)	185, 794, 953, 1059
XhoI	CTCGAG	1 cut(s)	1109
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	2 cut(s)	662, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.