Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

69401851 .. 69403602

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGCTCCGAAATTAGTACAGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTCCTATCGCCTTATAAATTTAACCGAAGGAATGTTCAAGCTGACGATGTTTCCGTAAAGATCACACATTGCGGAGTTTGTTATGCTGAGGTCGTTTGGCCAAGGAACAAATTTGGAGATGCAATCTATCCTATGGTGCCAGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGCGACCATGTTGGAGTTGGAACTTATACCAACTCATGTAGAGATTGCGAGTATTGTAACGATGGCCAAGAAGTTTACTGTGATAAAGGACCAGTTTTCACTTATAACCGTTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGTACTGCTTCAAAATACCAGAGGACTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTAACTGTTTTCAGCACAAGTATGTCAAAGAGAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCAAGACCAAATGAAGGCACTAGCTAAGTCACTTGACTTTATCATTGACACAGCATCTGGTATTCACCCATTCGACGAATACATGTCACTACTGAAGCATGCTGGTGTTCTAGTCATCGTGGGTGCCCCAAGTGAAATCAAATTGAGCCCTATAAGCCTTATTATGGGTAAGAGATCAATTACTGGTAGCGCAGCAGGTGGTACAAAACTGATTCAAGAAATGATAAACTTTTGTGCCACTCACAAGATATATCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAAGCTATTGAGAGGCTCATAAACAAGGATGTCAAGTATCGTTTTGTGGTAGATATTGAAAACTCCTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

39.18

Weight (kDa)

6.59

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 156	5.1e-24	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	196 - 318	1.1e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 378
AarI	CACCTGC	1 cut(s)	902
AasI	GACNNNNNNGTC	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	902
AccB1I	GGYRCC	2 cut(s)	208, 839
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	54, 144, 585
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	89, 182, 608
AcuI	CTGAAG	2 cut(s)	468, 830
AfaI	GTAC	4 cut(s)	19, 400, 449, 919
AfiI	CCNNNNNNNGG	2 cut(s)	730, 880
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	6 cut(s)	110, 268, 457, 932, 1064, 1075
AjnI	CCWGG	2 cut(s)	211, 553
AluBI	AGCT	5 cut(s)	6, 113, 674, 740, 1010
AluI	AGCT	5 cut(s)	6, 113, 674, 740, 1010
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	773
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	51, 170, 337, 577
ApeKI	GCWGC	2 cut(s)	488, 908
ApoI	RAATTY	3 cut(s)	89, 182, 608
Asp700I	GAANNNNTTC	1 cut(s)	984
AspA2I	CCTAGG	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	908
AspS9I	GGNCC	4 cut(s)	51, 248, 362, 535
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	3 cut(s)	248, 362, 535
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	844
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	2 cut(s)	208, 839
BanII	GRGCYC	2 cut(s)	8, 866
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	500, 920
BccI	CCATC	4 cut(s)	42, 329, 389, 526
BciT130I	CCWGG	2 cut(s)	213, 555
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	3 cut(s)	566, 737, 827
BfuAI	ACCTGC	1 cut(s)	902
BisI	GCNGC	3 cut(s)	54, 489, 909
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	3 cut(s)	55, 490, 910
Bme1390I	CCNGG	2 cut(s)	213, 555
Bme18I	GGWCC	3 cut(s)	248, 362, 535
BmgT120I	GGNCC	4 cut(s)	51, 248, 362, 535
BmiI	GGNNCC	2 cut(s)	210, 841
BmrFI	CCNGG	2 cut(s)	213, 555
BmsI	GCATC	3 cut(s)	52, 181, 779
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 880
Bse1I	ACTGG	2 cut(s)	365, 904
Bse3DI	GCAATG	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	213, 555
BseDI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BseGI	GGATG	3 cut(s)	53, 710, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	730, 880
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	365, 904
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	500, 920
BshFI	GGCC	4 cut(s)	53, 172, 339, 579
BshNI	GGYRCC	2 cut(s)	208, 839
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	730, 880
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	4 cut(s)	53, 172, 339, 579
Bsp1286I	GDGCHC	3 cut(s)	8, 844, 866
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	132, 573, 890
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	3 cut(s)	54, 144, 585
BspANI	GGCC	4 cut(s)	53, 172, 339, 579
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	210, 841
BspMI	ACCTGC	1 cut(s)	902
BspT107I	GGYRCC	2 cut(s)	208, 839
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	365, 904
BssECI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BssMI	GATC	3 cut(s)	132, 573, 890
BssT1I	CCWWGG	4 cut(s)	173, 409, 565, 580
Bst2UI	CCWGG	2 cut(s)	213, 555
Bst4CI	ACNGT	5 cut(s)	353, 383, 433, 517, 640
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	508, 816
BstDEI	CTNAG	2 cut(s)	159, 741
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	3 cut(s)	53, 710, 1039
BstHHI	GCGC	1 cut(s)	908
BstKTI	GATC	3 cut(s)	135, 576, 893
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	3 cut(s)	132, 573, 890
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
BstNI	CCWGG	2 cut(s)	213, 555
BstNSI	RCATGY	2 cut(s)	802, 818
BstSCI	CCNGG	2 cut(s)	211, 553
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	500, 920
BsuRI	GGCC	4 cut(s)	53, 172, 339, 579
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	53, 710, 1039
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	429, 494
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	2 cut(s)	508, 816
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	1 cut(s)	908
Cfr13I	GGNCC	4 cut(s)	51, 248, 362, 535
Csp6I	GTAC	4 cut(s)	18, 399, 448, 918
CviAII	CATG	9 cut(s)	218, 281, 309, 410, 440, 529, 598, 799, 815
CviQI	GTAC	4 cut(s)	18, 399, 448, 918
DdeI	CTNAG	2 cut(s)	159, 741
DpnI	GATC	3 cut(s)	134, 575, 892
DpnII	GATC	3 cut(s)	132, 573, 890
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	2 cut(s)	170, 337
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	4 cut(s)	173, 409, 565, 580
Eco24I	GRGCYC	2 cut(s)	8, 866
Eco47I	GGWCC	3 cut(s)	248, 362, 535
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	468, 830
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	211, 553
EcoT14I	CCWWGG	4 cut(s)	173, 409, 565, 580
EcoT38I	GRGCYC	2 cut(s)	8, 866
ErhI	CCWWGG	4 cut(s)	173, 409, 565, 580
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	9 cut(s)	221, 284, 312, 413, 443, 532, 601, 802, 818
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	9 cut(s)	217, 280, 308, 409, 439, 528, 597, 798, 814
Fnu4HI	GCNGC	3 cut(s)	54, 489, 909
FokI	GGATG	3 cut(s)	60, 697, 1046
FriOI	GRGCYC	2 cut(s)	8, 866
Fsp4HI	GCNGC	3 cut(s)	54, 489, 909
FspBI	CTAG	3 cut(s)	566, 737, 827
GlaI	GCGC	1 cut(s)	907
GluI	GCNGC	3 cut(s)	54, 489, 909
HaeIII	GGCC	4 cut(s)	53, 172, 339, 579
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	908
Hin1II	CATG	9 cut(s)	221, 284, 312, 413, 443, 532, 601, 802, 818
Hin6I	GCGC	1 cut(s)	906
HinP1I	GCGC	1 cut(s)	906
HinfI	GANTC	5 cut(s)	72, 417, 627, 679, 928
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	2 cut(s)	349, 520
Hpy188I	TCNGA	2 cut(s)	10, 678
Hpy188III	TCNNGA	2 cut(s)	69, 932
Hpy8I	GTNNAC	2 cut(s)	349, 520
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	2 cut(s)	93, 724
HpyCH4III	ACNGT	5 cut(s)	353, 383, 433, 517, 640
HpyCH4V	TGCA	2 cut(s)	194, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
HpyF3I	CTNAG	2 cut(s)	159, 741
Hsp92II	CATG	9 cut(s)	221, 284, 312, 413, 443, 532, 601, 802, 818
HspAI	GCGC	1 cut(s)	906
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	132, 573, 890
LmnI	GCTCC	2 cut(s)	11, 689
Lsp1109I	GCAGC	2 cut(s)	500, 920
LweI	GCATC	3 cut(s)	52, 181, 779
MaeI	CTAG	3 cut(s)	566, 737, 827
MaeIII	GTNAC	5 cut(s)	329, 593, 634, 744, 801
MalI	GATC	3 cut(s)	134, 575, 892
MboI	GATC	3 cut(s)	132, 573, 890
MhlI	GDGCHC	3 cut(s)	8, 844, 866
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	9 cut(s)	12, 89, 182, 402, 608, 697, 857, 894, 990
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	3 cut(s)	81, 621, 673
MmeI	TCCRAC	3 cut(s)	265, 271, 738
MnlI	CCTC	5 cut(s)	154, 235, 407, 460, 1011
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	984
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	3 cut(s)	602, 653, 819
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	213, 555
MvaI	CCWGG	2 cut(s)	213, 555
MwoI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	3 cut(s)	132, 573, 890
NlaIII	CATG	9 cut(s)	221, 284, 312, 413, 443, 532, 601, 802, 818
NlaIV	GGNNCC	2 cut(s)	210, 841
NmuCI	GTSAC	3 cut(s)	593, 744, 801
NspI	RCATGY	2 cut(s)	802, 818
PaeI	GCATGC	1 cut(s)	818
PaqCI	CACCTGC	1 cut(s)	902
PciI	ACATGT	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	417, 928
PkrI	GCNGC	3 cut(s)	55, 490, 910
PleI	GAGTC	3 cut(s)	80, 621, 673
PpsI	GAGTC	3 cut(s)	80, 621, 673
PscI	ACATGT	1 cut(s)	798
PsiI	TTATAA	2 cut(s)	87, 378
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	211, 553
PspGI	CCWGG	2 cut(s)	211, 553
PspN4I	GGNNCC	2 cut(s)	210, 841
PspPI	GGNCC	4 cut(s)	51, 248, 362, 535
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	19, 400, 449, 919
RsaNI	GTAC	4 cut(s)	18, 399, 448, 918
RseI	CAYNNNNRTG	3 cut(s)	602, 653, 819
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	3 cut(s)	54, 489, 909
Sau3AI	GATC	3 cut(s)	132, 573, 890
Sau96I	GGNCC	4 cut(s)	51, 248, 362, 535
SchI	GAGTC	3 cut(s)	81, 621, 673
ScrFI	CCNGG	2 cut(s)	213, 555
SduI	GDGCHC	3 cut(s)	8, 844, 866
SfaNI	GCATC	3 cut(s)	52, 181, 779
SinI	GGWCC	3 cut(s)	248, 362, 535
SmiMI	CAYNNNNRTG	3 cut(s)	602, 653, 819
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	1 cut(s)	818
Sse9I	AATT	9 cut(s)	12, 89, 182, 402, 608, 697, 857, 894, 990
SsiI	CCGC	3 cut(s)	54, 144, 585
SspMI	CTAG	3 cut(s)	566, 737, 827
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	211, 553
StyI	CCWWGG	4 cut(s)	173, 409, 565, 580
TaaI	ACNGT	5 cut(s)	353, 383, 433, 517, 640
TaqI	TCGA	1 cut(s)	789
TasI	AATT	9 cut(s)	12, 89, 182, 402, 608, 697, 857, 894, 990
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	417, 928
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	436, 501
TseFI	GTSAC	3 cut(s)	593, 744, 801
TseI	GCWGC	2 cut(s)	488, 908
Tsp45I	GTSAC	3 cut(s)	593, 744, 801
TspDTI	ATGAA	5 cut(s)	248, 456, 560, 743, 1020
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	2 cut(s)	436, 501
VpaK11BI	GGWCC	3 cut(s)	248, 362, 535
XapI	RAATTY	3 cut(s)	89, 182, 608
XceI	RCATGY	2 cut(s)	802, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	3 cut(s)	566, 737, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.