Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

66002 .. 68317

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgtttggttctttaagagttcgagtactcatactaggacaatcgacgacccacaaacaaagccgagctctctctccccgtatctttggggataagtcaacaatgagtgaaaaagggaattgcattggatatgctgcaagggatccatctggagttctatcccattatgaatttagccgcagggatcttggaaccgatgatgtttccataagaattactcattgcggagtttgttatgctgatgtgatttggaccagaaataagcatggagactccaagtaccctctagtgcctggacacgagattgcgggtattgtaaaagaggtaggttcaaatgttaagcggttcaaagtcggtgaccatgttggagtgggaacctatgtcaactcatgcagagattgtgagtattgcaatgatggacttgaagttcagtgcgtaaagggatcagttttcacttttaatggtgttgatgctgatggtacaattacgaaagggggatactccagtcacatagttgttcacgataggtactgctacaagatacctgataactatccattggcttccgcagcacctttgctttgtgctggaattactgtttatgctcctatgatgcgccataagatgaaccaacccggtaaatctctaggcgtgattgggcttggtggtcttggtcacatggcagtgaagtttggaaaggcatttggtttgaatgtaacagttttcagcacaagcataaccaagaaagaggaagccttaagtcagcttggtgcagataaatttgtggtctcatctgaccaagagcagatgaaggctttggtgaagtcacttgactttatagttgacacagcgtctggtgatcacccatttgatccatacatggcattgttaaagacgggtggaattttcgtcttggtgggattccccagtgaaatcaaattcagtcctgcaagccttaatcttggtatgaaaaccatttctggtagtttaacaggtggaacaaaggatacacaggaaatgatagatttctgtgctgctcatggaatccacccaatgattgaagtaattccaattcaatatgcaaatgaagctattgacaggcttacaaaaagagatgtgaaataccggtttgtgattgacattgaaaactccctgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

386

Amino Acids

41.98

Weight (kDa)

8.41

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	178, 225, 308, 343, 567
AclWI	GGATC	5 cut(s)	137, 150, 192, 451, 866
AcsI	RAATTY	4 cut(s)	170, 779, 903, 938
AfaI	GTAC	4 cut(s)	27, 281, 481, 530
AflII	CTTAAG	1 cut(s)	757
AgeI	ACCGGT	1 cut(s)	1125
AgsI	TTSAA	7 cut(s)	333, 349, 425, 712, 1061, 1076, 1145
AhdI	GACNNNNNGTC	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	411, 443
AluBI	AGCT	3 cut(s)	68, 766, 1091
AluI	AGCT	3 cut(s)	68, 766, 1091
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	264, 793
AlwI	GGATC	5 cut(s)	137, 150, 192, 451, 866
AlwNI	CAGNNNCTG	1 cut(s)	854
ApeKI	GCWGC	3 cut(s)	134, 569, 1034
ApoI	RAATTY	4 cut(s)	170, 779, 903, 938
AsiGI	ACCGGT	1 cut(s)	1125
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	252
AsuC2I	CCSGG	1 cut(s)	636
AsuHPI	GGTGA	4 cut(s)	368, 832, 854, 869
AvaII	GGWCC	1 cut(s)	252
BaeI	ACNNNNGTAYC	2 cut(s)	490, 523
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	121, 581, 1021
BccI	CCATC	3 cut(s)	154, 410, 470
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	2 cut(s)	491, 1000
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	636
BcoDI	GTCTC	2 cut(s)	264, 793
BfaI	CTAG	3 cut(s)	35, 287, 647
BfrI	CTTAAG	1 cut(s)	757
BfuI	GTATCC	2 cut(s)	491, 1000
BisI	GCNGC	4 cut(s)	135, 178, 570, 1035
BlsI	GCNGC	4 cut(s)	136, 179, 571, 1036
BmcAI	AGTACT	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	294, 636
Bme18I	GGWCC	1 cut(s)	252
BmeRI	GACNNNNNGTC	1 cut(s)	850
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	3 cut(s)	144, 193, 376
BmrFI	CCNGG	2 cut(s)	294, 636
BmrI	ACTGGG	1 cut(s)	921
BmsI	GCATC	2 cut(s)	460, 603
BmuI	ACTGGG	1 cut(s)	921
BpmI	CTGGAG	2 cut(s)	171, 487
BpuMI	CCSGG	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	793
BsaWI	WCCGGW	1 cut(s)	1125
Bse118I	RCCGGY	1 cut(s)	1125
Bse1I	ACTGG	2 cut(s)	504, 927
Bse3DI	GCAATG	2 cut(s)	220, 418
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	552
BseMI	GCAATG	2 cut(s)	220, 418
BseNI	ACTGG	2 cut(s)	504, 927
BseXI	GCAGC	3 cut(s)	121, 581, 1021
BsgI	GTGCAG	1 cut(s)	792
BshTI	ACCGGT	1 cut(s)	1125
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	636, 1126
BsmAI	GTCTC	2 cut(s)	264, 793
Bso31I	GGTCTC	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	142, 184, 443, 859, 871
BspACI	CCGC	5 cut(s)	178, 225, 308, 343, 567
BspLI	GGNNCC	3 cut(s)	144, 193, 376
BspPI	GGATC	5 cut(s)	137, 150, 192, 451, 866
BspTI	CTTAAG	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	793
BsrDI	GCAATG	2 cut(s)	220, 418
BsrFI	RCCGGY	1 cut(s)	1125
BsrI	ACTGG	2 cut(s)	504, 927
BssAI	RCCGGY	1 cut(s)	1125
BssMI	GATC	5 cut(s)	142, 184, 443, 859, 871
BssSI	CACGAG	1 cut(s)	299
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	598, 721
BstAFI	CTTAAG	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	952
BstEII	GGTNACC	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	5 cut(s)	145, 187, 446, 862, 874
BstMAI	GTCTC	2 cut(s)	264, 793
BstMBI	GATC	5 cut(s)	142, 184, 443, 859, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 1088
BstNI	CCWGG	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	292, 634
BstV1I	GCAGC	3 cut(s)	121, 581, 1021
BstX2I	RGATCY	2 cut(s)	142, 184
BstYI	RGATCY	2 cut(s)	142, 184
BsuI	GTATCC	2 cut(s)	491, 1000
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	3 cut(s)	437, 690, 934
Cac8I	GCNNGC	1 cut(s)	952
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	1125
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	840
Csp6I	GTAC	4 cut(s)	26, 280, 480, 529
CspAI	ACCGGT	1 cut(s)	1125
CviAII	CATG	6 cut(s)	266, 362, 390, 679, 880, 1040
CviQI	GTAC	4 cut(s)	26, 280, 480, 529
DpnI	GATC	5 cut(s)	144, 186, 445, 861, 873
DpnII	GATC	5 cut(s)	142, 184, 443, 859, 871
DriI	GACNNNNNGTC	1 cut(s)	850
Eam1105I	GACNNNNNGTC	1 cut(s)	850
Ecl136II	GAGCTC	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	793
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	6 cut(s)	269, 365, 393, 682, 883, 1043
FatI	CATG	6 cut(s)	265, 361, 389, 678, 879, 1039
FauI	CCCGC	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	4 cut(s)	135, 178, 570, 1035
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	135, 178, 570, 1035
FspBI	CTAG	3 cut(s)	35, 287, 647
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	4 cut(s)	135, 178, 570, 1035
GsuI	CTGGAG	2 cut(s)	171, 487
HapII	CCGG	2 cut(s)	636, 1126
HgaI	GACGC	1 cut(s)	840
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	6 cut(s)	269, 365, 393, 682, 883, 1043
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HincII	GTYRAC	3 cut(s)	99, 385, 844
HindII	GTYRAC	3 cut(s)	99, 385, 844
HinfI	GANTC	3 cut(s)	272, 921, 1044
HpaII	CCGG	2 cut(s)	636, 1126
HphI	GGTGA	4 cut(s)	368, 832, 854, 869
Hpy166II	GTNNAC	4 cut(s)	99, 385, 520, 844
Hpy188I	TCNGA	1 cut(s)	796
Hpy188III	TCNNGA	2 cut(s)	150, 521
Hpy8I	GTNNAC	4 cut(s)	99, 385, 520, 844
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	805
HpyCH4III	ACNGT	2 cut(s)	598, 721
HpyCH4V	TGCA	7 cut(s)	123, 137, 393, 411, 773, 950, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 1088
Hsp92II	CATG	6 cut(s)	269, 365, 393, 682, 883, 1043
HspAI	GCGC	1 cut(s)	616
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	5 cut(s)	142, 184, 443, 859, 871
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	3 cut(s)	121, 581, 1021
LweI	GCATC	2 cut(s)	460, 603
MaeI	CTAG	3 cut(s)	35, 287, 647
MaeIII	GTNAC	5 cut(s)	356, 506, 674, 715, 825
MalI	GATC	5 cut(s)	144, 186, 445, 861, 873
MboI	GATC	5 cut(s)	142, 184, 443, 859, 871
MflI	RGATCY	2 cut(s)	142, 184
MhlI	GDGCHC	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	294, 316, 742
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	7 cut(s)	14, 339, 459, 758, 890, 957, 989
MslI	CAYNNNNRTG	1 cut(s)	683
MspCI	CTTAAG	1 cut(s)	757
MspI	CCGG	2 cut(s)	636, 1126
MspR9I	CCNGG	2 cut(s)	294, 636
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	569, 1088
NciI	CCSGG	1 cut(s)	636
NdeII	GATC	5 cut(s)	142, 184, 443, 859, 871
NlaIII	CATG	6 cut(s)	269, 365, 393, 682, 883, 1043
NlaIV	GGNNCC	3 cut(s)	144, 193, 376
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	4 cut(s)	356, 506, 674, 825
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	2 cut(s)	921, 1044
PinAI	ACCGGT	1 cut(s)	1125
PkrI	GCNGC	4 cut(s)	136, 179, 571, 1036
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	144, 193, 376
PspPI	GGNCC	1 cut(s)	252
PsrI	GAACNNNNNNTAC	2 cut(s)	991, 1023
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	2 cut(s)	142, 184
RsaI	GTAC	4 cut(s)	27, 281, 481, 530
RsaNI	GTAC	4 cut(s)	26, 280, 480, 529
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	7 cut(s)	14, 339, 459, 758, 890, 957, 989
SatI	GCNGC	4 cut(s)	135, 178, 570, 1035
Sau3AI	GATC	5 cut(s)	142, 184, 443, 859, 871
Sau96I	GGNCC	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	27
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	294, 636
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	460, 603
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
SsiI	CCGC	5 cut(s)	178, 225, 308, 343, 567
SspMI	CTAG	3 cut(s)	35, 287, 647
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	292, 634
TaaI	ACNGT	2 cut(s)	598, 721
TaqI	TCGA	2 cut(s)	22, 44
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	921, 1044
Tru1I	TTAA	7 cut(s)	14, 339, 459, 758, 890, 957, 989
Tru9I	TTAA	7 cut(s)	14, 339, 459, 758, 890, 957, 989
TscAI	CASTG	3 cut(s)	437, 690, 934
TseFI	GTSAC	4 cut(s)	356, 506, 674, 825
TseI	GCWGC	3 cut(s)	134, 569, 1034
Tsp45I	GTSAC	4 cut(s)	356, 506, 674, 825
TspDTI	ATGAA	5 cut(s)	183, 641, 824, 983, 1101
TspRI	CASTG	3 cut(s)	437, 690, 934
Vha464I	CTTAAG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	4 cut(s)	170, 779, 903, 938
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	3 cut(s)	35, 287, 647
ZrmI	AGTACT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.