Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

67147327 .. 67149083

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG499200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGCTCCGAAAATAGTACTACAAATGGAAGTGCGAACTGCTTGGGATGGGCTGCAAGGGACGCTTCCGGAGTCCTATCGCCTTACAAGTTTAACCGAAGGGATGTCCAAGACGATGACGTTTCCATAAAGATCACACACTGTGGAGTTTGTTATGCTGAGGTTGTTTGGCCAAGGAACAAACATGGAGATGCAACCTATCCTATGGTTCCTGGACATGAGATTGCTGGCATTGTCCAAGAGGTTGGTCCAAATGTTCGTCGATTTAAAGTTGGCGACCATGTTGGAGTTGGAACTTATACCAACTCATGTAGAGACTGTGAGTATTGTAACGATGGCCTTGAAGTTTACTGTGACAAAGGAGCAGTTTACACTTATAACCGTTTTGATTACGATGGAACAATTACGCAGGGAGGATTCTCCAGTTTCACTGTTGTACATGAAAGGTACTGCTTCAAAATATCAGAAGAGTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACAAACCTGGTAAATCCCTAGGGGTCATTGGCCTAGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCCTTCGGACTGAAGGTAACCGTTTTTAGCACAAGTATGTCGAAGAAAGATGAAGCTCTGACTCTGCTTGGGGCAGACAATTTCGTAGTCTCATCCGACCAAGACCAGATGAGGGCATTGGCTAAGTCACTTGACTTCATTATTGACACAGCATCTGGGAATCACCCGATTGAATTGTATATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTTGTGGGTGTCCCAAGTGAAATTAAATTGAAACCTTTCAACCTTATTACAGGTAAGAGATCAATTACAGGTAGCGTAGCAGGTGGTACAAAACAAATTCAAGAAATGGTAGATTTTTGTGCTGCTCACAAGATATATCCAAACATAGAAGTCGTTCCAATTCAGTATGTGAATGAAGCTATTGAGAGACTCATAAAGAAGGATGTCAAGTACCGGTTTGTGGTAGATATTGAAAACTCCCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

359

Amino Acids

39.25

Weight (kDa)

6.75

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 155	1.2e-23	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	196 - 318	1.4e-20	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	229 - 342	1.9e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AarI	CACCTGC	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	902
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	1 cut(s)	585
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	608, 927
AcuI	CTGAAG	3 cut(s)	468, 650, 830
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	5 cut(s)	19, 438, 449, 919, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	730, 1051
AgeI	ACCGGT	1 cut(s)	1044
AgsI	TTSAA	7 cut(s)	344, 457, 791, 862, 871, 932, 1064
AjnI	CCWGG	2 cut(s)	211, 553
AluBI	AGCT	3 cut(s)	6, 674, 1010
AluI	AGCT	3 cut(s)	6, 674, 1010
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	309, 712, 1012
AlwNI	CAGNNNCTG	1 cut(s)	773
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	170, 337, 577, 618
ApeKI	GCWGC	3 cut(s)	53, 488, 953
ApoI	RAATTY	2 cut(s)	608, 927
AsiGI	ACCGGT	1 cut(s)	1044
Asp700I	GAANNNNTTC	2 cut(s)	866, 984
AspA2I	CCTAGG	2 cut(s)	565, 580
AspS9I	GGNCC	2 cut(s)	248, 535
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	248, 535
AvrII	CCTAGG	2 cut(s)	565, 580
BalI	TGGCCA	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	40, 500, 940
BccI	CCATC	4 cut(s)	42, 329, 389, 526
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BciT130I	CCWGG	2 cut(s)	213, 555
BciVI	GTATCC	1 cut(s)	483
BcoDI	GTCTC	3 cut(s)	309, 712, 1012
BfaI	CTAG	3 cut(s)	566, 581, 827
BfuAI	ACCTGC	1 cut(s)	902
BfuI	GTATCC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	54, 489, 954
BlnI	CCTAGG	2 cut(s)	565, 580
BlsI	GCNGC	3 cut(s)	55, 490, 955
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	213, 555
Bme18I	GGWCC	2 cut(s)	248, 535
BmgT120I	GGNCC	2 cut(s)	248, 535
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	213, 555
BmsI	GCATC	2 cut(s)	181, 779
BpiI	GAAGAC	1 cut(s)	818
BpmI	CTGGAG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	173, 565, 580
BsaWI	WCCGGW	2 cut(s)	68, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 1051
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	213, 555
BseDI	CCNNGG	3 cut(s)	173, 565, 580
BseGI	GGATG	4 cut(s)	53, 109, 710, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	730, 1051
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	3 cut(s)	40, 500, 940
BshFI	GGCC	4 cut(s)	172, 339, 579, 620
BshTI	ACCGGT	1 cut(s)	1044
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	69, 1045
BslFI	GGGAC	2 cut(s)	74, 827
BslI	CCNNNNNNNGG	2 cut(s)	730, 1051
BsmAI	GTCTC	3 cut(s)	309, 712, 1012
BsmFI	GGGAC	2 cut(s)	74, 827
BsnI	GGCC	4 cut(s)	172, 339, 579, 620
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp13I	TCCGGA	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	132, 890
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	4 cut(s)	172, 339, 579, 620
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	1044
BsrGI	TGTACA	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	1044
BssECI	CCNNGG	3 cut(s)	173, 565, 580
BssMI	GATC	2 cut(s)	132, 890
BssT1I	CCWWGG	3 cut(s)	173, 565, 580
Bst2UI	CCWGG	2 cut(s)	213, 555
Bst4CI	ACNGT	7 cut(s)	143, 320, 353, 383, 433, 517, 640
Bst6I	CTCTTC	1 cut(s)	462
BstAUI	TGTACA	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	229, 508
BstDEI	CTNAG	2 cut(s)	159, 741
BstEII	GGTNACC	1 cut(s)	634
BstF5I	GGATG	4 cut(s)	53, 109, 710, 1039
BstKTI	GATC	2 cut(s)	135, 893
BstMAI	GTCTC	3 cut(s)	309, 712, 1012
BstMBI	GATC	2 cut(s)	132, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 488
BstNI	CCWGG	2 cut(s)	213, 555
BstPI	GGTNACC	1 cut(s)	634
BstSCI	CCNGG	2 cut(s)	211, 553
BstV1I	GCAGC	3 cut(s)	40, 500, 940
BstV2I	GAAGAC	1 cut(s)	818
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	172, 339, 579, 620
BtsCI	GGATG	4 cut(s)	53, 109, 710, 1039
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	139, 429, 494
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	2 cut(s)	229, 508
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	2 cut(s)	248, 535
CseI	GACGC	1 cut(s)	71
CsiI	ACCWGGT	1 cut(s)	553
Csp6I	GTAC	5 cut(s)	18, 437, 448, 918, 1042
CspAI	ACCGGT	1 cut(s)	1044
CviAII	CATG	7 cut(s)	185, 218, 281, 309, 440, 529, 598
CviQI	GTAC	5 cut(s)	18, 437, 448, 918, 1042
DdeI	CTNAG	2 cut(s)	159, 741
DpnI	GATC	2 cut(s)	134, 892
DpnII	GATC	2 cut(s)	132, 890
DraI	TTTAAA	1 cut(s)	268
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	173, 565, 580
Eco147I	AGGCCT	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	248, 535
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	3 cut(s)	468, 650, 830
Eco91I	GGTNACC	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	6
EcoO65I	GGTNACC	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	211, 553
EcoT14I	CCWWGG	3 cut(s)	173, 565, 580
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	173, 565, 580
FaeI	CATG	7 cut(s)	188, 221, 284, 312, 443, 532, 601
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	2 cut(s)	74, 827
FatI	CATG	7 cut(s)	184, 217, 280, 308, 439, 528, 597
Fnu4HI	GCNGC	3 cut(s)	54, 489, 954
FokI	GGATG	4 cut(s)	60, 116, 697, 1046
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	54, 489, 954
FspBI	CTAG	3 cut(s)	566, 581, 827
GluI	GCNGC	3 cut(s)	54, 489, 954
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	4 cut(s)	172, 339, 579, 620
HapII	CCGG	2 cut(s)	69, 1045
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	7 cut(s)	188, 221, 284, 312, 443, 532, 601
HinfI	GANTC	5 cut(s)	72, 417, 679, 778, 1020
HpaII	CCGG	2 cut(s)	69, 1045
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	3 cut(s)	349, 370, 520
Hpy188I	TCNGA	5 cut(s)	10, 466, 626, 678, 715
Hpy188III	TCNNGA	2 cut(s)	69, 932
Hpy8I	GTNNAC	3 cut(s)	349, 370, 520
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	4 cut(s)	93, 625, 631, 1024
HpyCH4III	ACNGT	7 cut(s)	143, 320, 353, 383, 433, 517, 640
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	56, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 488
HpyF3I	CTNAG	2 cut(s)	159, 741
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	7 cut(s)	188, 221, 284, 312, 443, 532, 601
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	132, 890
LmnI	GCTCC	2 cut(s)	11, 362
Lsp1109I	GCAGC	3 cut(s)	40, 500, 940
LweI	GCATC	2 cut(s)	181, 779
MabI	ACCWGGT	1 cut(s)	553
MaeI	CTAG	3 cut(s)	566, 581, 827
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	6 cut(s)	329, 353, 593, 634, 744, 801
MalI	GATC	2 cut(s)	134, 892
MboI	GATC	2 cut(s)	132, 890
MboII	GAAGA	3 cut(s)	479, 673, 823
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	9 cut(s)	402, 608, 697, 791, 852, 857, 894, 927, 990
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	3 cut(s)	81, 673, 1014
MmeI	TCCRAC	3 cut(s)	265, 271, 738
MnlI	CCTC	4 cut(s)	154, 235, 407, 723
Mox20I	TGGCCA	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	2 cut(s)	866, 984
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	3 cut(s)	93, 267, 855
MslI	CAYNNNNRTG	3 cut(s)	189, 602, 653
Msp20I	TGGCCA	1 cut(s)	172
MspI	CCGG	2 cut(s)	69, 1045
MspR9I	CCNGG	2 cut(s)	213, 555
MvaI	CCWGG	2 cut(s)	213, 555
MwoI	GCNNNNNNNGC	2 cut(s)	62, 488
NdeII	GATC	2 cut(s)	132, 890
NlaIII	CATG	7 cut(s)	188, 221, 284, 312, 443, 532, 601
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	4 cut(s)	353, 593, 744, 801
PaqCI	CACCTGC	1 cut(s)	902
PceI	AGGCCT	1 cut(s)	620
PdmI	GAANNNNTTC	2 cut(s)	866, 984
PfeI	GAWTC	2 cut(s)	417, 778
PfoI	TCCNGGA	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	1044
PkrI	GCNGC	3 cut(s)	55, 490, 955
PleI	GAGTC	3 cut(s)	80, 673, 1014
PpsI	GAGTC	3 cut(s)	80, 673, 1014
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	211, 553
PspEI	GGTNACC	1 cut(s)	634
PspGI	CCWGG	2 cut(s)	211, 553
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	248, 535
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	5 cut(s)	19, 438, 449, 919, 1043
RsaNI	GTAC	5 cut(s)	18, 437, 448, 918, 1042
RseI	CAYNNNNRTG	3 cut(s)	189, 602, 653
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	93, 267, 855
SatI	GCNGC	3 cut(s)	54, 489, 954
Sau3AI	GATC	2 cut(s)	132, 890
Sau96I	GGNCC	2 cut(s)	248, 535
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	3 cut(s)	81, 673, 1014
ScrFI	CCNGG	2 cut(s)	213, 555
SduI	GDGCHC	1 cut(s)	8
SexAI	ACCWGGT	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	181, 779
SinI	GGWCC	2 cut(s)	248, 535
SmiMI	CAYNNNNRTG	3 cut(s)	189, 602, 653
Sse9I	AATT	9 cut(s)	402, 608, 697, 791, 852, 857, 894, 927, 990
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	3 cut(s)	566, 581, 827
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	211, 553
StyI	CCWWGG	3 cut(s)	173, 565, 580
TaaI	ACNGT	7 cut(s)	143, 320, 353, 383, 433, 517, 640
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	262, 659
TasI	AATT	9 cut(s)	402, 608, 697, 791, 852, 857, 894, 927, 990
TatI	WGTACW	2 cut(s)	17, 436
TfiI	GAWTC	2 cut(s)	417, 778
Tru1I	TTAA	3 cut(s)	93, 267, 855
Tru9I	TTAA	3 cut(s)	93, 267, 855
TscAI	CASTG	3 cut(s)	146, 436, 501
TseFI	GTSAC	4 cut(s)	353, 593, 744, 801
TseI	GCWGC	3 cut(s)	53, 488, 953
Tsp45I	GTSAC	4 cut(s)	353, 593, 744, 801
TspDTI	ATGAA	5 cut(s)	456, 560, 684, 745, 1020
TspRI	CASTG	3 cut(s)	146, 436, 501
VpaK11BI	GGWCC	2 cut(s)	248, 535
XapI	RAATTY	2 cut(s)	608, 927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaJI	CCTAGG	2 cut(s)	565, 580
XmnI	GAANNNNTTC	2 cut(s)	866, 984
XspI	CTAG	3 cut(s)	566, 581, 827
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.