Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

10400107 .. 10402842

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1119800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGCTCACAGACGAGTAGTGTCAATGGAAACTGCTTGGGATGGGCTGCAATTGATGAATCTGGAGTTCTCTCGCCGTACAAGTTTACCCGAAGGGATCTTCGAAACGATGATGTGTCGATTAGGATTACGCACTGCGGAATTTGTTATGCTGATGTGGTTTTTCCAAGGAACAAGCATGGCAACGCCAACTATCCAATGGTGCCTGGACATGAGATTGCTGGCATTGTTCAAGAGGTTGGTCCAAATGTTCACGGCTTCAAAGTTGGTGATCATGTTGGAGTGGGAACTTTTGTTAATTCTTGTAGAGATTGCGACTATTGTAGAGATGGCCAAGAGATTTCCTGTGAAAAGGGAGCAGTTATGACTTATAACCATGTTGATGCTGATGGCACGATTACAAAAGGAGGGTTTTCCAGTTACATTGTTGCTCATGAAAGGTACTGCTTCAAGATACCAGAGGGCTACCCCTTGGCTTCTGCAGCACCTCTGCTTTGTGCCGGCATTACTGTTTATTCTCCAATGATCCGCCATAAAATGAACCAGGGCGGTAAATCACTAGGTGTGATTGGCCTTGGTGGTCTCGGACACTTGGCAGTGAAGTTTGGGAAGGCTTTCGGACTAAACGTGACAGTTTTCAGCACAAGCTTATCAAAGAAGGAGGAAGCTCTAAGTCTGCTTGGTGCAGACAATTTCGTTGTCTCATCCAACCAAGAGGAAATGACGGCCCTGGCTAAGTCGCTTGACTTCATCATCGACACAGCATCTGGTGATCATCCATTTGATTTGTATATGTCTCTGCTGAAGACTGCTGGTGTTCTAGTCTTGGTTGGGGCACCAAGCGAAGTTAAATTAAGTCCTTTGAGCTTGATTATGGGTATTTTAACACTTTTAATACTCTCAGTTTTCATTTTTAAGACAAGAATTATAGATTTTTTTACAATATATATTGACTATTTGTCAGGTATGAAGTCGATTTCTGGTAGCGGAACTGGCGGTACAAAACAGACGCAGGAAATGTTAGACTTTTGTGCTGCTCACAAAATATATCCAAACATAGAAATAGTTCCAATTCAGTATGTGAATGAAGCTCTTGAGAGGCTGATCAAGAGGGATGTGAAGTACCGTTTTGTTATAGATGTCGAAAACTCCCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

387

Amino Acids

41.92

Weight (kDa)

6.41

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 154	7.1e-27	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 294	4.9e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB1I	GGYRCC	2 cut(s)	202, 835
AciI	CCGC	5 cut(s)	138, 529, 549, 987, 996
AclWI	GGATC	2 cut(s)	105, 520
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	824
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	4 cut(s)	80, 443, 1000, 1124
AgsI	TTSAA	3 cut(s)	233, 262, 451
AhdI	GACNNNNNGTC	1 cut(s)	958
AjnI	CCWGG	3 cut(s)	205, 543, 729
AluBI	AGCT	5 cut(s)	6, 648, 668, 867, 1091
AluI	AGCT	5 cut(s)	6, 648, 668, 867, 1091
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	587, 706, 801
AlwI	GGATC	2 cut(s)	105, 520
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	331, 571, 726
ApeKI	GCWGC	3 cut(s)	47, 482, 1034
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	614, 1065
AspS9I	GGNCC	2 cut(s)	242, 727
AsuHPI	GGTGA	2 cut(s)	281, 782
AsuII	TTCGAA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	202, 835
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	34, 494, 1021
BccI	CCATC	3 cut(s)	36, 323, 383
BceAI	ACGGC	3 cut(s)	61, 271, 741
BciT130I	CCWGG	3 cut(s)	207, 545, 731
BclI	TGATCA	3 cut(s)	271, 772, 1104
BcoDI	GTCTC	3 cut(s)	587, 706, 801
BfaI	CTAG	2 cut(s)	560, 821
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	3 cut(s)	48, 483, 1035
BlsI	GCNGC	3 cut(s)	49, 484, 1036
Bme1390I	CCNGG	3 cut(s)	207, 545, 731
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	958
BmgT120I	GGNCC	2 cut(s)	242, 727
BmiI	GGNNCC	2 cut(s)	204, 837
BmrFI	CCNGG	3 cut(s)	207, 545, 731
BmsI	GCATC	2 cut(s)	373, 773
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	1115
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	5 cut(s)	167, 471, 544, 574, 729
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	417, 997
BseBI	CCWGG	3 cut(s)	207, 545, 731
BseDI	CCNNGG	5 cut(s)	167, 471, 544, 574, 729
BseGI	GGATG	4 cut(s)	47, 704, 775, 1120
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	2 cut(s)	417, 997
BseSI	GKGCMC	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	34, 494, 1021
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	333, 573, 728
BshNI	GGYRCC	2 cut(s)	202, 835
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	501
BsmAI	GTCTC	3 cut(s)	587, 706, 801
BsnI	GGCC	3 cut(s)	333, 573, 728
Bso31I	GGTCTC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	8, 838
Bsp143I	GATC	5 cut(s)	97, 271, 525, 772, 1104
BspACI	CCGC	5 cut(s)	138, 529, 549, 987, 996
BspANI	GGCC	3 cut(s)	333, 573, 728
BspCNI	CTCAG	1 cut(s)	914
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	204, 837
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	2 cut(s)	105, 520
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	2 cut(s)	202, 835
BspTNI	GGTCTC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	417, 997
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	167, 471, 544, 574, 729
BssMI	GATC	5 cut(s)	97, 271, 525, 772, 1104
BssT1I	CCWWGG	3 cut(s)	167, 471, 574
Bst2UI	CCWGG	3 cut(s)	207, 545, 731
Bst4CI	ACNGT	3 cut(s)	511, 634, 1127
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	223, 502
BstDEI	CTNAG	3 cut(s)	671, 735, 901
BstF5I	GGATG	4 cut(s)	47, 704, 775, 1120
BstKTI	GATC	5 cut(s)	100, 274, 528, 775, 1107
BstMAI	GTCTC	3 cut(s)	587, 706, 801
BstMBI	GATC	5 cut(s)	97, 271, 525, 772, 1104
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 993
BstNI	CCWGG	3 cut(s)	207, 545, 731
BstSCI	CCNGG	3 cut(s)	205, 543, 729
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	838
BstV1I	GCAGC	3 cut(s)	34, 494, 1021
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	333, 573, 728
BtsCI	GGATG	4 cut(s)	47, 704, 775, 1120
BtsI	GCAGTG	2 cut(s)	133, 603
BtsIMutI	CAGTG	2 cut(s)	133, 603
Cac8I	GCNNGC	2 cut(s)	223, 502
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	242, 727
CseI	GACGC	1 cut(s)	1018
Csp6I	GTAC	4 cut(s)	79, 442, 999, 1123
CviAII	CATG	5 cut(s)	179, 212, 275, 377, 434
CviQI	GTAC	4 cut(s)	79, 442, 999, 1123
DdeI	CTNAG	3 cut(s)	671, 735, 901
DpnI	GATC	5 cut(s)	99, 273, 527, 774, 1106
DpnII	GATC	5 cut(s)	97, 271, 525, 772, 1104
DraIII	CACNNNGTG	1 cut(s)	563
DriI	GACNNNNNGTC	1 cut(s)	958
EaeI	YGGCCR	1 cut(s)	331
Eam1105I	GACNNNNNGTC	1 cut(s)	958
EciI	GGCGGA	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	167, 471, 574
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	824
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	3 cut(s)	205, 543, 729
EcoT14I	CCWWGG	3 cut(s)	167, 471, 574
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	167, 471, 574
FaeI	CATG	5 cut(s)	182, 215, 278, 380, 437
FatI	CATG	5 cut(s)	178, 211, 274, 376, 433
FbaI	TGATCA	3 cut(s)	271, 772, 1104
Fnu4HI	GCNGC	3 cut(s)	48, 483, 1035
FokI	GGATG	4 cut(s)	54, 691, 762, 1127
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	48, 483, 1035
FspBI	CTAG	2 cut(s)	560, 821
GluI	GCNGC	3 cut(s)	48, 483, 1035
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	333, 573, 728
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	1018
Hin1II	CATG	5 cut(s)	182, 215, 278, 380, 437
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	2 cut(s)	281, 782
Hpy166II	GTNNAC	2 cut(s)	87, 253
Hpy188I	TCNGA	2 cut(s)	587, 620
Hpy188III	TCNNGA	6 cut(s)	63, 233, 434, 451, 1094, 1108
Hpy8I	GTNNAC	2 cut(s)	87, 253
HpyAV	CCTTC	3 cut(s)	87, 604, 652
HpyCH4III	ACNGT	3 cut(s)	511, 634, 1127
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	3 cut(s)	50, 482, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 993
HpyF3I	CTNAG	3 cut(s)	671, 735, 901
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	5 cut(s)	182, 215, 278, 380, 437
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Ksp22I	TGATCA	3 cut(s)	271, 772, 1104
Kzo9I	GATC	5 cut(s)	97, 271, 525, 772, 1104
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	3 cut(s)	34, 494, 1021
LweI	GCATC	2 cut(s)	373, 773
MaeI	CTAG	2 cut(s)	560, 821
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	419, 628
MalI	GATC	5 cut(s)	99, 273, 527, 774, 1106
MboI	GATC	5 cut(s)	97, 271, 525, 772, 1104
MboII	GAAGA	2 cut(s)	92, 817
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	8, 838
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	7 cut(s)	51, 141, 298, 691, 851, 924, 1071
MluNI	TGGCCA	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	259, 732
MnlI	CCTC	8 cut(s)	229, 401, 454, 498, 655, 709, 1092, 1104
Mox20I	TGGCCA	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	500
MroXI	GAANNNNTTC	2 cut(s)	614, 1065
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	6 cut(s)	297, 849, 854, 884, 893, 915
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	207, 545, 731
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	3 cut(s)	207, 545, 731
MwoI	GCNNNNNNNGC	2 cut(s)	482, 993
NaeI	GCCGGC	1 cut(s)	502
NdeII	GATC	5 cut(s)	97, 271, 525, 772, 1104
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	5 cut(s)	182, 215, 278, 380, 437
NlaIV	GGNNCC	2 cut(s)	204, 837
NmuCI	GTSAC	1 cut(s)	628
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	502
PdmI	GAANNNNTTC	2 cut(s)	614, 1065
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	49, 484, 1036
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	205, 543, 729
PspGI	CCWGG	3 cut(s)	205, 543, 729
PspN4I	GGNNCC	2 cut(s)	204, 837
PspPI	GGNCC	2 cut(s)	242, 727
PsrI	GAACNNNNNNTAC	2 cut(s)	982, 1014
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	4 cut(s)	80, 443, 1000, 1124
RsaNI	GTAC	4 cut(s)	79, 442, 999, 1123
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	6 cut(s)	297, 849, 854, 884, 893, 915
SatI	GCNGC	3 cut(s)	48, 483, 1035
Sau3AI	GATC	5 cut(s)	97, 271, 525, 772, 1104
Sau96I	GGNCC	2 cut(s)	242, 727
ScrFI	CCNGG	3 cut(s)	207, 545, 731
SduI	GDGCHC	2 cut(s)	8, 838
SfaNI	GCATC	2 cut(s)	373, 773
SfcI	CTRYAG	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	1094
SmoI	CTYRAG	1 cut(s)	1094
Sse9I	AATT	7 cut(s)	51, 141, 298, 691, 851, 924, 1071
SsiI	CCGC	5 cut(s)	138, 529, 549, 987, 996
SspMI	CTAG	2 cut(s)	560, 821
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	205, 543, 729
StyI	CCWWGG	3 cut(s)	167, 471, 574
TaaI	ACNGT	3 cut(s)	511, 634, 1127
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	5 cut(s)	103, 119, 756, 974, 1143
TasI	AATT	7 cut(s)	51, 141, 298, 691, 851, 924, 1071
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	6 cut(s)	297, 849, 854, 884, 893, 915
Tru9I	TTAA	6 cut(s)	297, 849, 854, 884, 893, 915
TscAI	CASTG	2 cut(s)	140, 603
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	47, 482, 1034
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	7 cut(s)	72, 450, 554, 739, 898, 983, 1101
TspRI	CASTG	2 cut(s)	140, 603
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	614, 1065
XspI	CTAG	2 cut(s)	560, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.