Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

60569468 .. 60571561

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGCTCCGAAATTAGTGCAGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTGTTATCGCCTTATAAATTTAATCGAAGGAATGTTCAAGCCGACGATGTTTCCATAAAGATCACACATTGTGGAGTTTGCTATGCTGAGGTCGTTTGGCCAAGGAACAAACATGGAGATGCAACCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGAGACCATGTTGGGGTTGGAACTTATACCAACTCATGTAGAGATTGCGAGTATTGTAACGATGGCCAAGAAGTTTACTGTGATAAGGGAGCAGTATTTACTTATAACCGTTTTGATTACAATGGCACCATCACCCATGGAGGGTTCTCCACTTTCACTGTTGTCCACGAAAGGTACTGCTTCAAAATACCAGAGGACGACTATCCATTGGCTTCAGCAGCCCCACTGCTTTGTGCTGGCATTACTGTTTACGCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGTGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCCAGGTAACTGTTTTCAGCACAAGCATGTCAAAGAAAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCGAGACCAAATGAAGGCACTAGCTAAATCACTTGACTTTATCATTGACACAGCATCTGGTGATCACCCATTCGACGAGTACATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTCGTGGGTGCCCCAAGTGAAATCAAATTGAGCCCTATAAGCCTTATTATGGGTAAGAGATCAATTACCGGTAGCGCAACAGGTGGTACAAAACAGATTCAAGAAATGATAAACTTTTGTGCCGCTCACAAGATATACCCAAACATAGAAGTTGTTCCAATTCAGTATGTGAATGAAGCTATTGAGAGGCTCATAAACAAGGATGTCAAGTATCGCTTTGTGGTAGATATTGAAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

39.19

Weight (kDa)

6.41

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 156	8.9e-25	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	197 - 319	2.4e-19	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	230 - 343	4.5e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 378
AasI	GACNNNNNNGTC	1 cut(s)	704
AccB1I	GGYRCC	3 cut(s)	208, 398, 842
AccBSI	CCGCTC	1 cut(s)	959
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	2 cut(s)	54, 957
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	2 cut(s)	89, 611
AcuI	CTGAAG	2 cut(s)	471, 833
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	449, 800, 922
AfiI	CCNNNNNNNGG	4 cut(s)	286, 414, 733, 883
AflIII	ACRYGT	1 cut(s)	801
AgeI	ACCGGT	1 cut(s)	902
AgsI	TTSAA	5 cut(s)	110, 268, 457, 935, 1067
AjnI	CCWGG	3 cut(s)	211, 556, 633
AluBI	AGCT	4 cut(s)	6, 677, 743, 1013
AluI	AGCT	4 cut(s)	6, 677, 743, 1013
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	270, 717
AlwNI	CAGNNNCTG	1 cut(s)	776
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	51, 170, 337, 580
ApeKI	GCWGC	2 cut(s)	20, 491
ApoI	RAATTY	2 cut(s)	89, 611
AsiGI	ACCGGT	1 cut(s)	902
Asp700I	GAANNNNTTC	1 cut(s)	987
AspA2I	CCTAGG	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	3 cut(s)	51, 248, 538
AsuHPI	GGTGA	3 cut(s)	397, 776, 791
AvaII	GGWCC	2 cut(s)	248, 538
AvrII	CCTAGG	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	847
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	3 cut(s)	208, 398, 842
BanII	GRGCYC	2 cut(s)	8, 869
BauI	CACGAG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	32, 503
BccI	CCATC	4 cut(s)	42, 329, 410, 529
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	213, 558, 635
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	270, 717
BfaI	CTAG	3 cut(s)	569, 740, 830
BisI	GCNGC	4 cut(s)	21, 54, 492, 957
BlnI	CCTAGG	1 cut(s)	568
BlsI	GCNGC	4 cut(s)	22, 55, 493, 958
Bme1390I	CCNGG	3 cut(s)	213, 558, 635
Bme18I	GGWCC	2 cut(s)	248, 538
BmgT120I	GGNCC	3 cut(s)	51, 248, 538
BmiI	GGNNCC	3 cut(s)	210, 400, 844
BmrFI	CCNGG	3 cut(s)	213, 558, 635
BmsI	GCATC	3 cut(s)	52, 181, 782
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	270, 717
BsaJI	CCNNGG	5 cut(s)	173, 409, 557, 568, 583
BsaWI	WCCGGW	2 cut(s)	68, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 414, 733, 883
Bse118I	RCCGGY	1 cut(s)	902
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	213, 558, 635
BseDI	CCNNGG	5 cut(s)	173, 409, 557, 568, 583
BseGI	GGATG	3 cut(s)	53, 713, 1042
BseLI	CCNNNNNNNGG	4 cut(s)	286, 414, 733, 883
BseMII	CTCAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	847
BseXI	GCAGC	2 cut(s)	32, 503
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	53, 172, 339, 582
BshNI	GGYRCC	3 cut(s)	208, 398, 842
BshTI	ACCGGT	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	69, 903
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	4 cut(s)	286, 414, 733, 883
BsmAI	GTCTC	2 cut(s)	270, 717
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	4 cut(s)	53, 172, 339, 582
Bso31I	GGTCTC	2 cut(s)	270, 717
Bsp1286I	GDGCHC	3 cut(s)	8, 847, 869
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	132, 576, 781, 893
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	2 cut(s)	54, 957
BspANI	GGCC	4 cut(s)	53, 172, 339, 582
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	210, 400, 844
BspT107I	GGYRCC	3 cut(s)	208, 398, 842
BspTNI	GGTCTC	2 cut(s)	270, 717
BsrBI	CCGCTC	1 cut(s)	959
BsrFI	RCCGGY	1 cut(s)	902
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	5 cut(s)	173, 409, 557, 568, 583
BssMI	GATC	4 cut(s)	132, 576, 781, 893
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	4 cut(s)	173, 409, 568, 583
Bst2BI	CACGAG	1 cut(s)	836
Bst2UI	CCWGG	3 cut(s)	213, 558, 635
Bst4CI	ACNGT	5 cut(s)	353, 383, 433, 520, 643
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	3 cut(s)	53, 713, 1042
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	4 cut(s)	135, 579, 784, 896
BstMAI	GTCTC	2 cut(s)	270, 717
BstMBI	GATC	4 cut(s)	132, 576, 781, 893
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 491, 579, 873
BstNI	CCWGG	3 cut(s)	213, 558, 635
BstNSI	RCATGY	2 cut(s)	661, 805
BstSCI	CCNGG	3 cut(s)	211, 556, 633
BstSLI	GKGCMC	1 cut(s)	847
BstV1I	GCAGC	2 cut(s)	32, 503
BstV2I	GAAGAC	1 cut(s)	821
BsuRI	GGCC	4 cut(s)	53, 172, 339, 582
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	53, 713, 1042
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	429, 497
Cac8I	GCNNGC	1 cut(s)	511
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	1 cut(s)	911
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	3 cut(s)	51, 248, 538
Csp6I	GTAC	3 cut(s)	448, 799, 921
CspAI	ACCGGT	1 cut(s)	902
CviAII	CATG	9 cut(s)	185, 218, 281, 309, 410, 532, 601, 658, 802
CviQI	GTAC	3 cut(s)	448, 799, 921
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	4 cut(s)	134, 578, 783, 895
DpnII	GATC	4 cut(s)	132, 576, 781, 893
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	704
EaeI	YGGCCR	2 cut(s)	170, 337
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	4 cut(s)	173, 409, 568, 583
Eco24I	GRGCYC	2 cut(s)	8, 869
Eco31I	GGTCTC	2 cut(s)	270, 717
Eco47I	GGWCC	2 cut(s)	248, 538
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	471, 833
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	3 cut(s)	211, 556, 633
EcoT14I	CCWWGG	4 cut(s)	173, 409, 568, 583
EcoT38I	GRGCYC	2 cut(s)	8, 869
ErhI	CCWWGG	4 cut(s)	173, 409, 568, 583
FaeI	CATG	9 cut(s)	188, 221, 284, 312, 413, 535, 604, 661, 805
FalI	AAGNNNNNCTT	4 cut(s)	49, 81, 1034, 1066
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	9 cut(s)	184, 217, 280, 308, 409, 531, 600, 657, 801
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	21, 54, 492, 957
FokI	GGATG	3 cut(s)	60, 700, 1049
FriOI	GRGCYC	2 cut(s)	8, 869
Fsp4HI	GCNGC	4 cut(s)	21, 54, 492, 957
FspBI	CTAG	3 cut(s)	569, 740, 830
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	4 cut(s)	21, 54, 492, 957
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	4 cut(s)	53, 172, 339, 582
HapII	CCGG	2 cut(s)	69, 903
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	9 cut(s)	188, 221, 284, 312, 413, 535, 604, 661, 805
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HinfI	GANTC	3 cut(s)	630, 682, 931
HpaII	CCGG	2 cut(s)	69, 903
HphI	GGTGA	3 cut(s)	397, 776, 791
Hpy166II	GTNNAC	3 cut(s)	349, 439, 523
Hpy188I	TCNGA	2 cut(s)	10, 681
Hpy188III	TCNNGA	2 cut(s)	69, 935
Hpy8I	GTNNAC	3 cut(s)	349, 439, 523
Hpy99I	CGWCG	2 cut(s)	119, 797
HpyAV	CCTTC	2 cut(s)	93, 727
HpyCH4III	ACNGT	5 cut(s)	353, 383, 433, 520, 643
HpyCH4V	TGCA	3 cut(s)	20, 194, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 491, 579, 873
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	9 cut(s)	188, 221, 284, 312, 413, 535, 604, 661, 805
HspAI	GCGC	1 cut(s)	909
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	132, 576, 781, 893
LmnI	GCTCC	4 cut(s)	11, 362, 532, 692
Lsp1109I	GCAGC	2 cut(s)	32, 503
LweI	GCATC	3 cut(s)	52, 181, 782
MaeI	CTAG	3 cut(s)	569, 740, 830
MaeIII	GTNAC	4 cut(s)	329, 596, 637, 804
MalI	GATC	4 cut(s)	134, 578, 783, 895
MbiI	CCGCTC	1 cut(s)	959
MboI	GATC	4 cut(s)	132, 576, 781, 893
MboII	GAAGA	1 cut(s)	826
MhlI	GDGCHC	3 cut(s)	8, 847, 869
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	7 cut(s)	12, 89, 611, 700, 860, 897, 993
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	2 cut(s)	624, 676
MmeI	TCCRAC	3 cut(s)	253, 271, 741
MnlI	CCTC	6 cut(s)	154, 235, 407, 460, 845, 1014
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	987
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	3 cut(s)	189, 605, 656
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	2 cut(s)	69, 903
MspR9I	CCNGG	3 cut(s)	213, 558, 635
MvaI	CCWGG	3 cut(s)	213, 558, 635
MwoI	GCNNNNNNNGC	4 cut(s)	62, 491, 579, 873
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	4 cut(s)	132, 576, 781, 893
NlaIII	CATG	9 cut(s)	188, 221, 284, 312, 413, 535, 604, 661, 805
NlaIV	GGNNCC	3 cut(s)	210, 400, 844
NmuCI	GTSAC	2 cut(s)	596, 804
NspI	RCATGY	2 cut(s)	661, 805
PciI	ACATGT	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	931
PinAI	ACCGGT	1 cut(s)	902
PkrI	GCNGC	4 cut(s)	22, 55, 493, 958
PleI	GAGTC	2 cut(s)	624, 676
PpsI	GAGTC	2 cut(s)	624, 676
PscI	ACATGT	1 cut(s)	801
PsiI	TTATAA	2 cut(s)	87, 378
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	211, 556, 633
PspGI	CCWGG	3 cut(s)	211, 556, 633
PspN4I	GGNNCC	3 cut(s)	210, 400, 844
PspPI	GGNCC	3 cut(s)	51, 248, 538
PstNI	CAGNNNCTG	1 cut(s)	776
RsaI	GTAC	3 cut(s)	449, 800, 922
RsaNI	GTAC	3 cut(s)	448, 799, 921
RseI	CAYNNNNRTG	3 cut(s)	189, 605, 656
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	21, 54, 492, 957
Sau3AI	GATC	4 cut(s)	132, 576, 781, 893
Sau96I	GGNCC	3 cut(s)	51, 248, 538
SchI	GAGTC	2 cut(s)	624, 676
ScrFI	CCNGG	3 cut(s)	213, 558, 635
SduI	GDGCHC	3 cut(s)	8, 847, 869
SfaNI	GCATC	3 cut(s)	52, 181, 782
SinI	GGWCC	2 cut(s)	248, 538
SmiMI	CAYNNNNRTG	3 cut(s)	189, 605, 656
Sse9I	AATT	7 cut(s)	12, 89, 611, 700, 860, 897, 993
SsiI	CCGC	2 cut(s)	54, 957
SspMI	CTAG	3 cut(s)	569, 740, 830
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	211, 556, 633
StyI	CCWWGG	4 cut(s)	173, 409, 568, 583
TaaI	ACNGT	5 cut(s)	353, 383, 433, 520, 643
TaqI	TCGA	2 cut(s)	97, 792
TasI	AATT	7 cut(s)	12, 89, 611, 700, 860, 897, 993
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	2 cut(s)	56, 959
TfiI	GAWTC	1 cut(s)	931
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	2 cut(s)	436, 504
TseFI	GTSAC	2 cut(s)	596, 804
TseI	GCWGC	2 cut(s)	20, 491
Tsp45I	GTSAC	2 cut(s)	596, 804
TspDTI	ATGAA	4 cut(s)	248, 563, 746, 1023
TspRI	CASTG	2 cut(s)	436, 504
VpaK11BI	GGWCC	2 cut(s)	248, 538
XapI	RAATTY	2 cut(s)	89, 611
XceI	RCATGY	2 cut(s)	661, 805
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	3 cut(s)	569, 740, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.