Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

72430592 .. 72431985

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAATTGCTGGGGATGGGCCGCAAGAGATGCTTCCTGAGAATGTTCGAGCTGACGATGTTTCCGTAAAGATCACACATTGTGGAGTTTGTTATGCTAAGGTCATTTGGCCAAGGAACAAATTTGGAGATGCAATCTATCCTATGGTGCATGGATGGTTGGCATGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGTGACCATGTCGGAGTTGGAACCTATACCGATTCATGTAGAGACTGCGAGTATTGTAACAATGGCCAAGAAAATTACTGTGATAAAGAAGCAGTTTACACTTATAACCATTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGGTAAGTAGCAAAGCACTATTCAGTAACCAGTACTGCTTTAAAATACTAGAAGATTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTGCAGGCTAAGTCACTTGACTTTATCATTGACACGACATCTGGAAATCACCCAATTGACTTGTACATGATAGGAGCATTTTTATGTGATGTTTTAATAATTATTTCCTCATATTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

240

Amino Acids

26.31

Weight (kDa)

5.88

Isoelectric Point (pI)

23.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	18 - 128	9.3e-16	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AciI	CCGC	2 cut(s)	23, 552
AcoI	YGGCCR	2 cut(s)	110, 274
AcsI	RAATTY	2 cut(s)	122, 575
AcuI	CTGAAG	1 cut(s)	435
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	3 cut(s)	337, 416, 665
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	246
AoxI	GGCC	4 cut(s)	20, 110, 274, 544
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	2 cut(s)	122, 575
AspA2I	CCTAGG	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	20, 185, 502
AsuHPI	GGTGA	2 cut(s)	224, 641
AvaII	GGWCC	2 cut(s)	185, 502
AvrII	CCTAGG	1 cut(s)	532
BalI	TGGCCA	2 cut(s)	112, 276
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	4 cut(s)	11, 150, 326, 493
BciT130I	CCWGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	431, 533
BisI	GCNGC	2 cut(s)	23, 456
BlnI	CCTAGG	1 cut(s)	532
BlsI	GCNGC	2 cut(s)	24, 457
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	185, 502
BmgT120I	GGNCC	3 cut(s)	20, 185, 502
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	21, 121
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	581
BsaJI	CCNNGG	5 cut(s)	113, 346, 521, 532, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	5 cut(s)	113, 346, 521, 532, 547
BseGI	GGATG	2 cut(s)	22, 161
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	467
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	623
BshFI	GGCC	4 cut(s)	22, 112, 276, 546
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	4 cut(s)	22, 112, 276, 546
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	2 cut(s)	72, 540
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	2 cut(s)	23, 552
BspANI	GGCC	4 cut(s)	22, 112, 276, 546
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	232
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	5 cut(s)	113, 346, 521, 532, 547
BssMI	GATC	2 cut(s)	72, 540
BssT1I	CCWWGG	4 cut(s)	113, 346, 532, 547
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	290, 370, 484
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	166, 475, 606
BstDEI	CTNAG	4 cut(s)	39, 99, 609, 720
BstDSI	CCRYGG	1 cut(s)	346
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	22, 161
BstKTI	GATC	2 cut(s)	75, 543
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	72, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 455, 543
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	168
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	22, 112, 276, 546
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	22, 161
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	366, 461
Cac8I	GCNNGC	3 cut(s)	166, 475, 606
Cfr13I	GGNCC	3 cut(s)	20, 185, 502
Csp6I	GTAC	3 cut(s)	336, 415, 664
CviAII	CATG	9 cut(s)	152, 165, 218, 246, 347, 377, 496, 565, 667
CviJI	RGCY	9 cut(s)	22, 53, 112, 276, 449, 546, 569, 587, 608
CviKI_1	RGCY	9 cut(s)	22, 53, 112, 276, 449, 546, 569, 587, 608
CviQI	GTAC	3 cut(s)	336, 415, 664
DdeI	CTNAG	4 cut(s)	39, 99, 609, 720
DpnI	GATC	2 cut(s)	74, 542
DpnII	GATC	2 cut(s)	72, 540
DraI	TTTAAA	1 cut(s)	424
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	2 cut(s)	110, 274
Eco130I	CCWWGG	4 cut(s)	113, 346, 532, 547
Eco47I	GGWCC	2 cut(s)	185, 502
Eco57I	CTGAAG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	4 cut(s)	113, 346, 532, 547
EcoT22I	ATGCAT	1 cut(s)	170
ErhI	CCWWGG	4 cut(s)	113, 346, 532, 547
FaeI	CATG	9 cut(s)	155, 168, 221, 249, 350, 380, 499, 568, 670
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	9 cut(s)	151, 164, 217, 245, 346, 376, 495, 564, 666
Fnu4HI	GCNGC	2 cut(s)	23, 456
FokI	GGATG	2 cut(s)	29, 168
Fsp4HI	GCNGC	2 cut(s)	23, 456
FspBI	CTAG	2 cut(s)	431, 533
GluI	GCNGC	2 cut(s)	23, 456
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	22, 112, 276, 546
Hin1II	CATG	9 cut(s)	155, 168, 221, 249, 350, 380, 499, 568, 670
HinfI	GANTC	3 cut(s)	242, 354, 594
HphI	GGTGA	2 cut(s)	224, 641
Hpy166II	GTNNAC	2 cut(s)	307, 487
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	2 cut(s)	38, 642
Hpy8I	GTNNAC	2 cut(s)	307, 487
HpyCH4III	ACNGT	3 cut(s)	290, 370, 484
HpyCH4V	TGCA	5 cut(s)	134, 151, 168, 175, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 455, 543
HpyF3I	CTNAG	4 cut(s)	39, 99, 609, 720
Hsp92II	CATG	9 cut(s)	155, 168, 221, 249, 350, 380, 499, 568, 670
Kzo9I	GATC	2 cut(s)	72, 540
LmnI	GCTCC	1 cut(s)	674
LpnPI	CCDG	7 cut(s)	51, 425, 459, 507, 534, 590, 627
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	2 cut(s)	21, 121
MaeI	CTAG	2 cut(s)	431, 533
MaeIII	GTNAC	5 cut(s)	212, 266, 407, 560, 612
MalI	GATC	2 cut(s)	74, 542
MboI	GATC	2 cut(s)	72, 540
MboII	GAAGA	1 cut(s)	446
MfeI	CAATTG	1 cut(s)	654
MlsI	TGGCCA	2 cut(s)	112, 276
MluCI	AATT	7 cut(s)	6, 122, 283, 339, 575, 654, 699
MluNI	TGGCCA	2 cut(s)	112, 276
MlyI	GAGTC	1 cut(s)	588
MmeI	TCCRAC	2 cut(s)	202, 208
MnlI	CCTC	3 cut(s)	172, 344, 718
Mox20I	TGGCCA	2 cut(s)	112, 276
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	112, 276
MseI	TTAA	2 cut(s)	423, 695
MslI	CAYNNNNRTG	2 cut(s)	569, 682
Msp20I	TGGCCA	2 cut(s)	112, 276
MspR9I	CCNGG	1 cut(s)	522
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	31, 455, 543
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	72, 540
NlaIII	CATG	9 cut(s)	155, 168, 221, 249, 350, 380, 499, 568, 670
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	212, 560, 612
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	242, 354
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	24, 457
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	3 cut(s)	20, 185, 502
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	3 cut(s)	337, 416, 665
RsaNI	GTAC	3 cut(s)	336, 415, 664
RseI	CAYNNNNRTG	2 cut(s)	569, 682
SaqAI	TTAA	2 cut(s)	423, 695
SatI	GCNGC	2 cut(s)	23, 456
Sau3AI	GATC	2 cut(s)	72, 540
Sau96I	GGNCC	3 cut(s)	20, 185, 502
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	1 cut(s)	522
SetI	ASST	6 cut(s)	55, 105, 183, 236, 523, 603
SfaNI	GCATC	2 cut(s)	21, 121
SinI	GGWCC	2 cut(s)	185, 502
SmiMI	CAYNNNNRTG	2 cut(s)	569, 682
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	7 cut(s)	6, 122, 283, 339, 575, 654, 699
SsiI	CCGC	2 cut(s)	23, 552
SspMI	CTAG	2 cut(s)	431, 533
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	4 cut(s)	113, 346, 532, 547
TaaI	ACNGT	3 cut(s)	290, 370, 484
TaqI	TCGA	1 cut(s)	49
TasI	AATT	7 cut(s)	6, 122, 283, 339, 575, 654, 699
TatI	WGTACW	2 cut(s)	414, 663
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	242, 354
Tru1I	TTAA	2 cut(s)	423, 695
Tru9I	TTAA	2 cut(s)	423, 695
TscAI	CASTG	2 cut(s)	373, 468
TseFI	GTSAC	3 cut(s)	212, 560, 612
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	3 cut(s)	212, 560, 612
TspDTI	ATGAA	4 cut(s)	185, 234, 393, 527
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	2 cut(s)	373, 468
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	185, 502
XapI	RAATTY	2 cut(s)	122, 575
XceI	RCATGY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmaJI	CCTAGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	431, 533
ZrmI	AGTACT	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.