Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

65086974 .. 65089362

Gene Structure 2389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG448900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGCTCCGAAATCAGTGCAGCAAATGGAAATGGGAACTGCTTGGGATGGGCCGCAAGAGATGCTTCCGGAGTCTTATCGCCTTATAAATTTAATCGAAGGAATGTTCAAGCCGACGATGTTTCCATAAAGATCACACATTGTGGAGTTTGCTATGCTGAGGTCGTTTGGCCAAGGAACAAACATGGAGATGCAACCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGAGACCATGTTGGGGTTGGAACTTATACCAACTCATGTAGAGATTGCGAGTATTGTAACGATGGCCAAGAAGTTTACTGTGATAAGGGAGCAGTATTTACTTATAACCGTTTTGATTACAATGGCACCATCACCCATGGAGGGTTCTCCACTTTCACTGTTGTCCACGAAAGGTACTGCTTCAAAATACCAGAGGACTATCCATTGGCTTCAGCAGCCCCACTGCTTTGTGCTGGCATTACTGTTTACGCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGTGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTAACTGTTTTCAGCACAAGCATGTCAAAGAAAGACGAAGCTCTGACTCTGCTTGGAGCAGACAATTTCGTCATATCATCCAACCAAGACCAAATGAAGGCACTAGCTAAATCACTTGACTTTATCATTGACACAGCATCTGGTGATCACCCATTCGACGAGTACATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTCGTGGGTGCCCCAAGTGAAATCAAATTGAGCCCTATAAGCCTTATTATGGGTACTTATTCTAGCATTTCATTTTACATAAATAGTTCATATATATATATAATTTTTCATTTTAAATTTCACATAAGAGTTTTATTCATGAAGTTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

327

Amino Acids

35.77

Weight (kDa)

6.85

Isoelectric Point (pI)

27.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	38 - 156	7.2e-25	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	196 - 292	3.7e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 378
AasI	GACNNNNNNGTC	1 cut(s)	701
AccB1I	GGYRCC	3 cut(s)	208, 398, 839
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	1 cut(s)	54
AcoI	YGGCCR	2 cut(s)	170, 337
AcsI	RAATTY	3 cut(s)	89, 608, 947
AcuI	CTGAAG	2 cut(s)	468, 830
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	449, 797, 886
AfiI	CCNNNNNNNGG	4 cut(s)	286, 414, 730, 880
AflIII	ACRYGT	1 cut(s)	798
AgsI	TTSAA	3 cut(s)	110, 268, 457
AjnI	CCWGG	2 cut(s)	211, 553
AluBI	AGCT	3 cut(s)	6, 674, 740
AluI	AGCT	3 cut(s)	6, 674, 740
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	773
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	4 cut(s)	51, 170, 337, 577
ApeKI	GCWGC	2 cut(s)	20, 488
ApoI	RAATTY	3 cut(s)	89, 608, 947
AspA2I	CCTAGG	1 cut(s)	565
AspS9I	GGNCC	3 cut(s)	51, 248, 535
AsuHPI	GGTGA	3 cut(s)	397, 773, 788
AvaII	GGWCC	2 cut(s)	248, 535
AvrII	CCTAGG	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	844
BalI	TGGCCA	2 cut(s)	172, 339
BanI	GGYRCC	3 cut(s)	208, 398, 839
BanII	GRGCYC	2 cut(s)	8, 866
BauI	CACGAG	1 cut(s)	833
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	32, 500
BccI	CCATC	4 cut(s)	42, 329, 410, 526
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	213, 555
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	4 cut(s)	566, 737, 827, 894
BisI	GCNGC	3 cut(s)	21, 54, 489
BlnI	CCTAGG	1 cut(s)	565
BlsI	GCNGC	3 cut(s)	22, 55, 490
Bme1390I	CCNGG	2 cut(s)	213, 555
Bme18I	GGWCC	2 cut(s)	248, 535
BmgT120I	GGNCC	3 cut(s)	51, 248, 535
BmiI	GGNNCC	3 cut(s)	210, 400, 841
BmrFI	CCNGG	2 cut(s)	213, 555
BmsI	GCATC	3 cut(s)	52, 181, 779
BpiI	GAAGAC	1 cut(s)	818
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 414, 730, 880
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	213, 555
BseDI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BseGI	GGATG	2 cut(s)	53, 710
BseLI	CCNNNNNNNGG	4 cut(s)	286, 414, 730, 880
BseMII	CTCAG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	32, 500
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	53, 172, 339, 579
BshNI	GGYRCC	3 cut(s)	208, 398, 839
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	4 cut(s)	286, 414, 730, 880
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	4 cut(s)	53, 172, 339, 579
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	3 cut(s)	8, 844, 866
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	132, 573, 778
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	4 cut(s)	53, 172, 339, 579
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	3 cut(s)	210, 400, 841
BspT107I	GGYRCC	3 cut(s)	208, 398, 839
BspTNI	GGTCTC	1 cut(s)	270
BssECI	CCNNGG	5 cut(s)	173, 409, 554, 565, 580
BssMI	GATC	3 cut(s)	132, 573, 778
BssSI	CACGAG	1 cut(s)	833
BssT1I	CCWWGG	4 cut(s)	173, 409, 565, 580
Bst2BI	CACGAG	1 cut(s)	833
Bst2UI	CCWGG	2 cut(s)	213, 555
Bst4CI	ACNGT	5 cut(s)	353, 383, 433, 517, 640
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	53, 710
BstKTI	GATC	3 cut(s)	135, 576, 781
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	132, 573, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
BstNI	CCWGG	2 cut(s)	213, 555
BstNSI	RCATGY	2 cut(s)	658, 802
BstSCI	CCNGG	2 cut(s)	211, 553
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	32, 500
BstV2I	GAAGAC	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	53, 172, 339, 579
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	53, 710
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	22, 429, 494
Cac8I	GCNNGC	1 cut(s)	508
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	969
Cfr13I	GGNCC	3 cut(s)	51, 248, 535
Csp6I	GTAC	3 cut(s)	448, 796, 885
CviQI	GTAC	3 cut(s)	448, 796, 885
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	3 cut(s)	134, 575, 780
DpnII	GATC	3 cut(s)	132, 573, 778
DraI	TTTAAA	1 cut(s)	946
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	701
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	2 cut(s)	170, 337
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	4 cut(s)	173, 409, 565, 580
Eco24I	GRGCYC	2 cut(s)	8, 866
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	248, 535
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	468, 830
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	2 cut(s)	211, 553
EcoT14I	CCWWGG	4 cut(s)	173, 409, 565, 580
EcoT38I	GRGCYC	2 cut(s)	8, 866
ErhI	CCWWGG	4 cut(s)	173, 409, 565, 580
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FaqI	GGGAC	1 cut(s)	639
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	21, 54, 489
FokI	GGATG	2 cut(s)	60, 697
FriOI	GRGCYC	2 cut(s)	8, 866
Fsp4HI	GCNGC	3 cut(s)	21, 54, 489
FspBI	CTAG	4 cut(s)	566, 737, 827, 894
GluI	GCNGC	3 cut(s)	21, 54, 489
HaeIII	GGCC	4 cut(s)	53, 172, 339, 579
HapII	CCGG	1 cut(s)	69
HinfI	GANTC	3 cut(s)	72, 627, 679
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	3 cut(s)	397, 773, 788
Hpy166II	GTNNAC	3 cut(s)	349, 439, 520
Hpy188I	TCNGA	2 cut(s)	10, 678
Hpy188III	TCNNGA	2 cut(s)	69, 970
Hpy8I	GTNNAC	3 cut(s)	349, 439, 520
Hpy99I	CGWCG	2 cut(s)	119, 794
HpyAV	CCTTC	2 cut(s)	93, 724
HpyCH4III	ACNGT	5 cut(s)	353, 383, 433, 517, 640
HpyCH4V	TGCA	3 cut(s)	20, 194, 238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
HpyF3I	CTNAG	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	132, 573, 778
LmnI	GCTCC	4 cut(s)	11, 362, 529, 689
LpnPI	CCDG	9 cut(s)	82, 198, 225, 477, 492, 540, 567, 759, 804
Lsp1109I	GCAGC	2 cut(s)	32, 500
LweI	GCATC	3 cut(s)	52, 181, 779
MaeI	CTAG	4 cut(s)	566, 737, 827, 894
MaeIII	GTNAC	4 cut(s)	329, 593, 634, 801
MalI	GATC	3 cut(s)	134, 575, 780
MboI	GATC	3 cut(s)	132, 573, 778
MboII	GAAGA	1 cut(s)	823
MhlI	GDGCHC	3 cut(s)	8, 844, 866
MlsI	TGGCCA	2 cut(s)	172, 339
MluCI	AATT	6 cut(s)	89, 608, 697, 857, 933, 947
MluNI	TGGCCA	2 cut(s)	172, 339
MlyI	GAGTC	3 cut(s)	81, 621, 673
MmeI	TCCRAC	3 cut(s)	253, 271, 738
MnlI	CCTC	5 cut(s)	154, 235, 407, 460, 842
Mox20I	TGGCCA	2 cut(s)	172, 339
MroI	TCCGGA	1 cut(s)	68
MscI	TGGCCA	2 cut(s)	172, 339
MseI	TTAA	2 cut(s)	93, 945
MslI	CAYNNNNRTG	3 cut(s)	189, 602, 653
Msp20I	TGGCCA	2 cut(s)	172, 339
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	2 cut(s)	213, 555
MvaI	CCWGG	2 cut(s)	213, 555
MwoI	GCNNNNNNNGC	4 cut(s)	62, 488, 576, 870
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	3 cut(s)	132, 573, 778
NlaIV	GGNNCC	3 cut(s)	210, 400, 841
NmuCI	GTSAC	2 cut(s)	593, 801
NspI	RCATGY	2 cut(s)	658, 802
PagI	TCATGA	1 cut(s)	969
PciI	ACATGT	1 cut(s)	798
PkrI	GCNGC	3 cut(s)	22, 55, 490
PleI	GAGTC	3 cut(s)	80, 621, 673
PpsI	GAGTC	3 cut(s)	80, 621, 673
PscI	ACATGT	1 cut(s)	798
PsiI	TTATAA	2 cut(s)	87, 378
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	211, 553
PspGI	CCWGG	2 cut(s)	211, 553
PspN4I	GGNNCC	3 cut(s)	210, 400, 841
PspPI	GGNCC	3 cut(s)	51, 248, 535
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	3 cut(s)	449, 797, 886
RsaNI	GTAC	3 cut(s)	448, 796, 885
RseI	CAYNNNNRTG	3 cut(s)	189, 602, 653
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	93, 945
SatI	GCNGC	3 cut(s)	21, 54, 489
Sau3AI	GATC	3 cut(s)	132, 573, 778
Sau96I	GGNCC	3 cut(s)	51, 248, 535
SchI	GAGTC	3 cut(s)	81, 621, 673
ScrFI	CCNGG	2 cut(s)	213, 555
SduI	GDGCHC	3 cut(s)	8, 844, 866
SetI	ASST	9 cut(s)	8, 165, 200, 246, 449, 556, 636, 676, 742
SfaNI	GCATC	3 cut(s)	52, 181, 779
SinI	GGWCC	2 cut(s)	248, 535
SmiMI	CAYNNNNRTG	3 cut(s)	189, 602, 653
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	6 cut(s)	89, 608, 697, 857, 933, 947
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	4 cut(s)	566, 737, 827, 894
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	211, 553
StyI	CCWWGG	4 cut(s)	173, 409, 565, 580
TaaI	ACNGT	5 cut(s)	353, 383, 433, 517, 640
TaqI	TCGA	2 cut(s)	97, 789
TasI	AATT	6 cut(s)	89, 608, 697, 857, 933, 947
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	93, 945
Tru9I	TTAA	2 cut(s)	93, 945
TscAI	CASTG	3 cut(s)	22, 436, 501
TseFI	GTSAC	2 cut(s)	593, 801
TseI	GCWGC	2 cut(s)	20, 488
Tsp45I	GTSAC	2 cut(s)	593, 801
TspDTI	ATGAA	7 cut(s)	248, 560, 743, 891, 909, 929, 958
TspRI	CASTG	3 cut(s)	22, 436, 501
VpaK11BI	GGWCC	2 cut(s)	248, 535
XapI	RAATTY	3 cut(s)	89, 608, 947
XceI	RCATGY	2 cut(s)	658, 802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	565
XspI	CTAG	4 cut(s)	566, 737, 827, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.