Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

31877868 .. 31880766

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40323.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGGTTCCACACCTAGGCTCTTACCTACTCGACCACTTGTGGTGGTTATTACTAGCCCCAAGTATGAAATATACCAATAGTCCATTACTGGCCCGAGGGGTCTTCCTCAAGTTGTGGGAACTATTCTTGCCTTACAAGTTTAACCGAAGGGATGTTCAACCTGACGATGTTTCGATAAAGATCACACACTGCGGAGTTTGTTATGCTGAGGTCGCTTGCCCAAAGAACAAACATGGAGATGCAACCTATCCTATGGTGCCTGGACATGAGATTGTTGGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGAGACCATGTTGGAGTTGGGGCTTATACCAACTCATGTAGAGATTGTGAGTATTGTAACGATGGCCTAGAGGTTTACTGTGATAAAGGAGTAGTGTTAACTTACAATCGGTTTGATTACGACGGCACCCTCACCCATGGAGGTTTTTCCACGTTCACTGTTGTCCATGAAAGGTACTGCTTCAAAATACCAGAGGACTACCCCTTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACAAACCTGGTAAATCCCTAGGGGTCATCGGCCTCGGTGGTCTTGGTCACATGGCTATGAAATTCGGCAAGGCCTTCAAACTCAAGGTGACCGTTTTCAGCACAAGCATGTCTAAGAAAGATGAAGCTCTAACTGTGCTTGGAGCTGACAACTTCGTGGTCTCGTCTGACCAAGACCAGATGAAGGCGCTGGCTAAGTCACTTGACTTCATCGTTGACACAGCATCTGGTGATCACCCGTTCGACTTGTACATGTCACTACTGAAGACTGCTGGTGTTCTAGTCCTTGTGGGTGCCCCAAATGAAATCAAATTGAGCCCTATGAGCCTTCTTATAGGTAAGAGATCAATTACCGGTAGCGTAGCAGGTGGTACAAAACAGATTCAAGAAATGTTAAACTTCTGTTCTGCTCACCAGATATATCCAAACATAGAAGTTGTTCCAATTCAGAATGTGAATGAAGCTATTGAGAGGCTCATAAAGAAGGATGTCAAGTACCGCTTTGTGGTAGACATTGGAAACTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

377

Amino Acids

41.49

Weight (kDa)

7.18

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	1 - 88	1.9e-17	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	128 - 225	1.1e-13	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	953
AccB1I	GGYRCC	3 cut(s)	259, 449, 890
AccI	GTMKAC	1 cut(s)	1107
AciI	CCGC	2 cut(s)	195, 1096
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	2 cut(s)	519, 881
AfaI	GTAC	4 cut(s)	500, 848, 970, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	17, 781, 1102
AflIII	ACRYGT	1 cut(s)	849
AgeI	ACCGGT	1 cut(s)	950
AgsI	TTSAA	5 cut(s)	161, 319, 508, 676, 983
AjnI	CCWGG	2 cut(s)	262, 604
AluBI	AGCT	3 cut(s)	725, 743, 1061
AluI	AGCT	3 cut(s)	725, 743, 1061
Alw26I	GTCTC	2 cut(s)	321, 763
AlwNI	CAGNNNCTG	1 cut(s)	824
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	4 cut(s)	93, 388, 628, 669
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	659
AsiGI	ACCGGT	1 cut(s)	950
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspA2I	CCTAGG	2 cut(s)	16, 616
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	3 cut(s)	94, 299, 586
AsuHPI	GGTGA	5 cut(s)	448, 697, 824, 839, 1001
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	299, 586
AvrII	CCTAGG	2 cut(s)	16, 616
BaeGI	GKGCMC	1 cut(s)	895
BanI	GGYRCC	3 cut(s)	259, 449, 890
BanII	GRGCYC	1 cut(s)	917
BbsI	GAAGAC	2 cut(s)	97, 869
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	2 cut(s)	380, 577
BceAI	ACGGC	1 cut(s)	463
BciT130I	CCWGG	2 cut(s)	264, 606
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	321, 763
BfaI	CTAG	5 cut(s)	17, 56, 392, 617, 878
BfoI	RGCGCY	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	953
BisI	GCNGC	1 cut(s)	540
BlnI	CCTAGG	2 cut(s)	16, 616
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	264, 606
Bme18I	GGWCC	2 cut(s)	299, 586
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	3 cut(s)	94, 299, 586
BmiI	GGNNCC	4 cut(s)	9, 261, 451, 892
BmrFI	CCNGG	2 cut(s)	264, 606
BmsI	GCATC	2 cut(s)	232, 830
BpiI	GAAGAC	2 cut(s)	97, 869
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	95, 665
BsaBI	GATNNNNATC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	321, 763
BsaJI	CCNNGG	6 cut(s)	16, 97, 460, 528, 616, 631
BsaWI	WCCGGW	1 cut(s)	950
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 781, 1102
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	264, 606
BseDI	CCNNGG	6 cut(s)	16, 97, 460, 528, 616, 631
BseGI	GGATG	2 cut(s)	160, 1090
BseJI	GATNNNNATC	1 cut(s)	182
BseLI	CCNNNNNNNGG	3 cut(s)	17, 781, 1102
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	1 cut(s)	551
BshFI	GGCC	4 cut(s)	95, 390, 630, 671
BshNI	GGYRCC	3 cut(s)	259, 449, 890
BshTI	ACCGGT	1 cut(s)	950
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	951
BslI	CCNNNNNNNGG	3 cut(s)	17, 781, 1102
BsmAI	GTCTC	2 cut(s)	321, 763
BsnI	GGCC	4 cut(s)	95, 390, 630, 671
Bso31I	GGTCTC	2 cut(s)	321, 763
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	895, 917
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	3 cut(s)	183, 829, 941
Bsp19I	CCATGG	1 cut(s)	460
BspACI	CCGC	2 cut(s)	195, 1096
BspANI	GGCC	4 cut(s)	95, 390, 630, 671
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	9, 261, 451, 892
BspMI	ACCTGC	1 cut(s)	953
BspT107I	GGYRCC	3 cut(s)	259, 449, 890
BspTNI	GGTCTC	2 cut(s)	321, 763
BsrFI	RCCGGY	1 cut(s)	950
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	6 cut(s)	16, 97, 460, 528, 616, 631
BssMI	GATC	3 cut(s)	183, 829, 941
BssT1I	CCWWGG	4 cut(s)	16, 460, 528, 616
Bst2UI	CCWGG	2 cut(s)	264, 606
Bst4CI	ACNGT	5 cut(s)	404, 484, 568, 691, 733
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	3 cut(s)	220, 559, 789
BstDEI	CTNAG	3 cut(s)	210, 711, 792
BstDSI	CCRYGG	1 cut(s)	460
BstEII	GGTNACC	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	160, 1090
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	3 cut(s)	186, 832, 944
BstMAI	GTCTC	2 cut(s)	321, 763
BstMBI	GATC	3 cut(s)	183, 829, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 539, 921
BstNI	CCWGG	2 cut(s)	264, 606
BstNSI	RCATGY	2 cut(s)	709, 853
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	262, 604
BstSLI	GKGCMC	1 cut(s)	895
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	2 cut(s)	97, 869
BsuRI	GGCC	4 cut(s)	95, 390, 630, 671
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	160, 1090
BtsI	GCAGTG	2 cut(s)	190, 545
BtsIMutI	CAGTG	3 cut(s)	190, 480, 545
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	3 cut(s)	220, 559, 789
CaiI	CAGNNNCTG	1 cut(s)	824
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	3 cut(s)	94, 299, 586
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	4 cut(s)	499, 847, 969, 1093
CspAI	ACCGGT	1 cut(s)	950
CviQI	GTAC	4 cut(s)	499, 847, 969, 1093
DdeI	CTNAG	3 cut(s)	210, 711, 792
DpnI	GATC	3 cut(s)	185, 831, 943
DpnII	GATC	3 cut(s)	183, 829, 941
Eco130I	CCWWGG	4 cut(s)	16, 460, 528, 616
Eco147I	AGGCCT	1 cut(s)	671
Eco24I	GRGCYC	1 cut(s)	917
Eco31I	GGTCTC	2 cut(s)	321, 763
Eco47I	GGWCC	2 cut(s)	299, 586
Eco57I	CTGAAG	2 cut(s)	519, 881
Eco88I	CYCGRG	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	685
EcoO65I	GGTNACC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	262, 604
EcoT14I	CCWWGG	4 cut(s)	16, 460, 528, 616
EcoT38I	GRGCYC	1 cut(s)	917
ErhI	CCWWGG	4 cut(s)	16, 460, 528, 616
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	1107
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	167, 1097
FriOI	GRGCYC	1 cut(s)	917
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	5 cut(s)	17, 56, 392, 617, 878
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	4 cut(s)	95, 390, 630, 671
HapII	CCGG	1 cut(s)	951
HhaI	GCGC	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	2 cut(s)	423, 814
HindII	GTYRAC	2 cut(s)	423, 814
HinfI	GANTC	1 cut(s)	979
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	951
HphI	GGTGA	5 cut(s)	448, 697, 824, 839, 1001
Hpy166II	GTNNAC	6 cut(s)	400, 423, 480, 571, 814, 1108
Hpy188I	TCNGA	2 cut(s)	766, 1047
Hpy188III	TCNNGA	1 cut(s)	983
Hpy8I	GTNNAC	6 cut(s)	400, 423, 480, 571, 814, 1108
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	5 cut(s)	144, 682, 775, 935, 1075
HpyCH4III	ACNGT	5 cut(s)	404, 484, 568, 691, 733
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	2 cut(s)	245, 289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 539, 921
HpyF3I	CTNAG	3 cut(s)	210, 711, 792
HpySE526I	ACGT	1 cut(s)	476
HspAI	GCGC	1 cut(s)	785
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	183, 829, 941
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	1 cut(s)	551
LweI	GCATC	2 cut(s)	232, 830
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	5 cut(s)	17, 56, 392, 617, 878
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	5 cut(s)	380, 644, 685, 795, 852
MalI	GATC	3 cut(s)	185, 831, 943
MboI	GATC	3 cut(s)	183, 829, 941
MboII	GAAGA	2 cut(s)	97, 874
MhlI	GDGCHC	2 cut(s)	895, 917
MluCI	AATT	4 cut(s)	659, 908, 945, 1041
MmeI	TCCRAC	2 cut(s)	304, 316
MroXI	GAANNNNTTC	1 cut(s)	1035
MseI	TTAA	3 cut(s)	144, 422, 992
MslI	CAYNNNNRTG	3 cut(s)	240, 653, 704
MspI	CCGG	1 cut(s)	951
MspR9I	CCNGG	2 cut(s)	264, 606
MvaI	CCWGG	2 cut(s)	264, 606
MwoI	GCNNNNNNNGC	3 cut(s)	215, 539, 921
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	183, 829, 941
NlaIV	GGNNCC	4 cut(s)	9, 261, 451, 892
NmuCI	GTSAC	4 cut(s)	644, 685, 795, 852
NspI	RCATGY	2 cut(s)	709, 853
PaqCI	CACCTGC	1 cut(s)	953
PceI	AGGCCT	1 cut(s)	671
PciI	ACATGT	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	1035
PfeI	GAWTC	1 cut(s)	979
PinAI	ACCGGT	1 cut(s)	950
PkrI	GCNGC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	262, 604
PspEI	GGTNACC	1 cut(s)	685
PspGI	CCWGG	2 cut(s)	262, 604
PspN4I	GGNNCC	4 cut(s)	9, 261, 451, 892
PspPI	GGNCC	3 cut(s)	94, 299, 586
PstNI	CAGNNNCTG	1 cut(s)	824
RsaI	GTAC	4 cut(s)	500, 848, 970, 1094
RsaNI	GTAC	4 cut(s)	499, 847, 969, 1093
RseI	CAYNNNNRTG	3 cut(s)	240, 653, 704
SaqAI	TTAA	3 cut(s)	144, 422, 992
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	183, 829, 941
Sau96I	GGNCC	3 cut(s)	94, 299, 586
ScrFI	CCNGG	2 cut(s)	264, 606
SduI	GDGCHC	2 cut(s)	895, 917
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	232, 830
SinI	GGWCC	2 cut(s)	299, 586
SmiMI	CAYNNNNRTG	3 cut(s)	240, 653, 704
SmlI	CTYRAG	2 cut(s)	110, 680
SmoI	CTYRAG	2 cut(s)	110, 680
Sse9I	AATT	4 cut(s)	659, 908, 945, 1041
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	2 cut(s)	195, 1096
SspMI	CTAG	5 cut(s)	17, 56, 392, 617, 878
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	262, 604
StyI	CCWWGG	4 cut(s)	16, 460, 528, 616
TaaI	ACNGT	5 cut(s)	404, 484, 568, 691, 733
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	33, 176, 840
TasI	AATT	4 cut(s)	659, 908, 945, 1041
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	979
Tru1I	TTAA	3 cut(s)	144, 422, 992
Tru9I	TTAA	3 cut(s)	144, 422, 992
TscAI	CASTG	3 cut(s)	197, 487, 552
TseFI	GTSAC	4 cut(s)	644, 685, 795, 852
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	4 cut(s)	644, 685, 795, 852
TspRI	CASTG	3 cut(s)	197, 487, 552
VpaK11BI	GGWCC	2 cut(s)	299, 586
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	2 cut(s)	709, 853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmaJI	CCTAGG	2 cut(s)	16, 616
XmiI	GTMKAC	1 cut(s)	1107
XmnI	GAANNNNTTC	1 cut(s)	1035
XspI	CTAG	5 cut(s)	17, 56, 392, 617, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.