MD17G1119700.v1.1

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
10381360 .. 10383445
2086 bp
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UTR
Exon/CDS
Intron
MD17G1119700.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGCGCATGCCCTTGCGTCATCGTTACATCCTCCTTAAAGCCTATTGCAAGTATATAAATAGGTCTCGTTTTACTATATATCAACAAACCCACAACTACTTGACGATCTCGTTCGATCTCTTACATATATATGCAAGCAACATGAGCTCAGAAAATGCAAATAAGGGGGAGGATTGCCTGGGATGGGCTGCAAGAGATGAGTCTGGGGTTCTTTCCCCTTACAAATTTGCCCGCCGGGCTGTTGGGAGTGACGATGTTTCCATAAAGATCACACACTGTGGAGTTTGCTATGCTGAAGTGGTTTGGACAAAGAACAAACATGGGGATGCCACCTATCCTTTAGTGCCTGGACATGAGATTGCCGGCATTGTGCAAGAGGTCGGTTCAAATGTTCGCGGATTCAAAGTTGGTGATCATGTTGGAGTGGGAACTTACATTAATTCATGCAGAAATTGTGATTACTGTAATGACGGCCTTGAAGTTTACTGTGAAAAAGGAGTTGTTTACACTTACAATCGTCTCGACATCGATGGTACCATGACAAAAGGCGGATTTTCCACTTACATTGTTGTCTGCGAAAGGTACTGCTTCAGGATAGCAGAATCCTATCCATTGGCTTCAGCAGCACCTCTTCTTTGCGCCGGCATTACTGTCTATTCTCCAATGATACGCCATAAGATGAACCAACCCGGTAAATCACTAGGCGTGATTGGCCTCGGCGGTCTTGGTCACTTAGCCGTGAAATTTGGTAAGGCTTTCGGACTGAATGTAACAGTTTTCAGCACAAGCACATCAAAGAAAGAGGAGTCTCTAACTCTGCTTGGTGCAGACAATTTCGTGGTCTCATCCGACCAAGAACAGATGAAGGCCATGGCTAAATCCCTCGACTTCATCATCGATACGGTATCTGCTGATCACTCATTTGATATGTACATGTTGCTTCTGAAGACTGCCGGCGTTTTTGTCATGGTTGGGGCACCAAATGAAGTTAAACTGAGTCCTATGAGCCTAATTCTGGGTATGAAATCGATATCTGGTAGCGTGGCGGGTGGTACGAAAGAGATGCAAGAAATGCTAGACTTCTGTGCAGCTCAGAAAATATATCCCAACATAGAAATAGTTCCGATTCAGTATGTGAATGAAGCAATTGAGAGGCTTATAAAGAAGGATGTGAAGTACCGGTTTGTGGTGGATATTGAGAACTCCCTGAAATATTGA

Protein Analysis

406

Amino Acids

44.87

Weight (kDa)

8.14

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 83 - 199 5.1e-23 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 241 - 363 1.1e-20 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 274 - 387 7.8e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1160
Acc16I TGCGCA 1 cut(s) 5
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 2 cut(s) 533, 976
AccII CGCG 1 cut(s) 396
AciI CCGC 5 cut(s) 232, 396, 549, 720, 1046
AcsI RAATTY 2 cut(s) 224, 743
AcuI CTGAAG 4 cut(s) 315, 574, 603, 965
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 5 cut(s) 535, 584, 932, 1054, 1178
AfiI CCNNNNNNNGG 3 cut(s) 184, 1015, 1186
AflIII ACRYGT 1 cut(s) 933
AgeI ACCGGT 1 cut(s) 1179
AgsI TTSAA 3 cut(s) 387, 403, 479
AjnI CCWGG 2 cut(s) 177, 346
AluBI AGCT 2 cut(s) 147, 1091
AluI AGCT 2 cut(s) 147, 1091
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 4 cut(s) 69, 524, 813, 847
AoxI GGCC 3 cut(s) 472, 712, 867
ApeKI GCWGC 3 cut(s) 188, 623, 1088
ApoI RAATTY 2 cut(s) 224, 743
AseI ATTAAT 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 1179
Asp700I GAANNNNTTC 1 cut(s) 1119
Asp718I GGTACC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 6, 641
AsuC2I CCSGG 2 cut(s) 236, 690
AsuHPI GGTGA 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 979
BanI GGYRCC 2 cut(s) 533, 976
BanII GRGCYC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 175, 635, 1100
BccI CCATC 2 cut(s) 177, 524
BceAI ACGGC 2 cut(s) 487, 722
BcgI CGANNNNNNTGC 2 cut(s) 1045, 1079
BciT130I CCWGG 2 cut(s) 179, 348
BclI TGATCA 2 cut(s) 412, 913
BcnI CCSGG 2 cut(s) 236, 690
BcoDI GTCTC 4 cut(s) 69, 524, 813, 847
BfaI CTAG 2 cut(s) 701, 1076
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 189, 624, 1089
BlsI GCNGC 3 cut(s) 190, 625, 1090
Bme1390I CCNGG 4 cut(s) 179, 236, 348, 690
BmiI GGNNCC 2 cut(s) 535, 978
BmrFI CCNGG 4 cut(s) 179, 236, 348, 690
BmsI GCATC 2 cut(s) 316, 1053
BpiI GAAGAC 1 cut(s) 953
BpuMI CCSGG 2 cut(s) 236, 690
Bsa29I ATCGAT 3 cut(s) 528, 897, 1028
BsaI GGTCTC 2 cut(s) 69, 847
BsaJI CCNNGG 3 cut(s) 178, 715, 870
BsaWI WCCGGW 1 cut(s) 1179
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 1015, 1186
Bse118I RCCGGY 4 cut(s) 362, 641, 953, 1179
BseBI CCWGG 2 cut(s) 179, 348
BseCI ATCGAT 3 cut(s) 528, 897, 1028
BseDI CCNNGG 3 cut(s) 178, 715, 870
BseGI GGATG 5 cut(s) 27, 188, 331, 845, 1174
BseLI CCNNNNNNNGG 3 cut(s) 184, 1015, 1186
BseMII CTCAG 3 cut(s) 162, 986, 1106
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 3 cut(s) 175, 635, 1100
BsgI GTGCAG 2 cut(s) 846, 1107
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 474, 714, 869
BshNI GGYRCC 2 cut(s) 533, 976
BshTI ACCGGT 1 cut(s) 1179
BshVI ATCGAT 3 cut(s) 528, 897, 1028
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 6 cut(s) 235, 363, 642, 690, 954, 1180
BslI CCNNNNNNNGG 3 cut(s) 184, 1015, 1186
BsmAI GTCTC 4 cut(s) 69, 524, 813, 847
BsmBI CGTCTC 1 cut(s) 524
BsnI GGCC 3 cut(s) 474, 714, 869
Bso31I GGTCTC 2 cut(s) 69, 847
Bsp1286I GDGCHC 2 cut(s) 149, 979
Bsp1407I TGTACA 1 cut(s) 930
Bsp143I GATC 5 cut(s) 105, 115, 267, 412, 913
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 5 cut(s) 232, 396, 549, 720, 1046
BspANI GGCC 3 cut(s) 474, 714, 869
BspCNI CTCAG 3 cut(s) 161, 987, 1105
BspDI ATCGAT 3 cut(s) 528, 897, 1028
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 535, 978
BspT107I GGYRCC 2 cut(s) 533, 976
BspTNI GGTCTC 2 cut(s) 69, 847
BsrFI RCCGGY 4 cut(s) 362, 641, 953, 1179
BsrGI TGTACA 1 cut(s) 930
BssAI RCCGGY 4 cut(s) 362, 641, 953, 1179
BssECI CCNNGG 3 cut(s) 178, 715, 870
BssMI GATC 5 cut(s) 105, 115, 267, 412, 913
BssT1I CCWWGG 1 cut(s) 870
Bst2UI CCWGG 2 cut(s) 179, 348
Bst4CI ACNGT 6 cut(s) 278, 464, 488, 652, 775, 904
Bst6I CTCTTC 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 1072
BstAUI TGTACA 1 cut(s) 930
BstC8I GCNNGC 6 cut(s) 8, 136, 232, 364, 643, 955
BstDEI CTNAG 4 cut(s) 148, 733, 995, 1092
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 5 cut(s) 27, 188, 331, 845, 1174
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 2 cut(s) 6, 641
BstKTI GATC 5 cut(s) 108, 118, 270, 415, 916
BstMAI GTCTC 4 cut(s) 69, 524, 813, 847
BstMBI GATC 5 cut(s) 105, 115, 267, 412, 913
BstMWI GCNNNNNNNGC 5 cut(s) 144, 236, 623, 711, 1072
BstNI CCWGG 2 cut(s) 179, 348
BstNSI RCATGY 2 cut(s) 10, 937
BstSCI CCNGG 4 cut(s) 177, 234, 346, 688
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 175, 635, 1100
BstV2I GAAGAC 1 cut(s) 953
Bsu15I ATCGAT 3 cut(s) 528, 897, 1028
BsuRI GGCC 3 cut(s) 474, 714, 869
BsuTUI ATCGAT 3 cut(s) 528, 897, 1028
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 5 cut(s) 27, 188, 331, 845, 1174
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 6 cut(s) 8, 136, 232, 364, 643, 955
CfoI GCGC 2 cut(s) 6, 641
Cfr10I RCCGGY 4 cut(s) 362, 641, 953, 1179
ClaI ATCGAT 3 cut(s) 528, 897, 1028
CseI GACGC 1 cut(s) 5
Csp6I GTAC 5 cut(s) 534, 583, 931, 1053, 1177
CspAI ACCGGT 1 cut(s) 1179
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviQI GTAC 5 cut(s) 534, 583, 931, 1053, 1177
DdeI CTNAG 4 cut(s) 148, 733, 995, 1092
DpnI GATC 5 cut(s) 107, 117, 269, 414, 915
DpnII GATC 5 cut(s) 105, 115, 267, 412, 913
DraIII CACNNNGTG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
EciI GGCGGA 1 cut(s) 564
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 2 cut(s) 69, 847
Eco32I GATATC 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 4 cut(s) 315, 574, 603, 965
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 177, 346
EcoRV GATATC 1 cut(s) 1032
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 524
FauI CCCGC 2 cut(s) 239, 1039
FbaI TGATCA 2 cut(s) 412, 913
Fnu4HI GCNGC 3 cut(s) 189, 624, 1089
FokI GGATG 5 cut(s) 14, 195, 338, 832, 1181
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 189, 624, 1089
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 701, 1076
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 640
GluI GCNGC 3 cut(s) 189, 624, 1089
HaeIII GGCC 3 cut(s) 474, 714, 869
HapII CCGG 6 cut(s) 235, 363, 642, 690, 954, 1180
HgaI GACGC 1 cut(s) 5
HhaI GCGC 2 cut(s) 6, 641
Hin6I GCGC 2 cut(s) 4, 639
HinP1I GCGC 2 cut(s) 4, 639
HinfI GANTC 6 cut(s) 200, 399, 602, 806, 997, 1126
HpaII CCGG 6 cut(s) 235, 363, 642, 690, 954, 1180
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 484, 505
Hpy188I TCNGA 6 cut(s) 151, 761, 850, 945, 1095, 1125
Hpy188III TCNNGA 2 cut(s) 521, 592
Hpy8I GTNNAC 2 cut(s) 484, 505
HpyAV CCTTC 2 cut(s) 859, 1159
HpyCH4III ACNGT 6 cut(s) 278, 464, 488, 652, 775, 904
HpyCH4V TGCA 9 cut(s) 48, 134, 158, 191, 373, 447, 827, 1066, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 144, 236, 623, 711, 1072
HpyF3I CTNAG 4 cut(s) 148, 733, 995, 1092
HspAI GCGC 2 cut(s) 4, 639
KpnI GGTACC 1 cut(s) 537
KroI GCCGGC 3 cut(s) 362, 641, 953
KroNI GCCGGC 3 cut(s) 364, 643, 955
Ksp22I TGATCA 2 cut(s) 412, 913
Kzo9I GATC 5 cut(s) 105, 115, 267, 412, 913
Lsp1109I GCAGC 3 cut(s) 175, 635, 1100
LweI GCATC 2 cut(s) 316, 1053
MaeI CTAG 2 cut(s) 701, 1076
MaeIII GTNAC 4 cut(s) 23, 248, 728, 769
MalI GATC 5 cut(s) 107, 117, 269, 414, 915
MboI GATC 5 cut(s) 105, 115, 267, 412, 913
MboII GAAGA 2 cut(s) 623, 958
MfeI CAATTG 1 cut(s) 1146
MhlI GDGCHC 2 cut(s) 149, 979
MluCI AATT 7 cut(s) 224, 439, 451, 743, 832, 1011, 1146
MlyI GAGTC 3 cut(s) 209, 815, 1006
MmeI TCCRAC 2 cut(s) 400, 873
MnlI CCTC 8 cut(s) 41, 163, 370, 639, 725, 796, 893, 1146
MroNI GCCGGC 3 cut(s) 362, 641, 953
MroXI GAANNNNTTC 1 cut(s) 1119
MseI TTAA 3 cut(s) 36, 438, 990
MslI CAYNNNNRTG 2 cut(s) 129, 324
MspI CCGG 6 cut(s) 235, 363, 642, 690, 954, 1180
MspR9I CCNGG 4 cut(s) 179, 236, 348, 690
MunI CAATTG 1 cut(s) 1146
MvaI CCWGG 2 cut(s) 179, 348
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 5 cut(s) 144, 236, 623, 711, 1072
NaeI GCCGGC 3 cut(s) 364, 643, 955
NciI CCSGG 2 cut(s) 236, 690
NcoI CCATGG 1 cut(s) 870
NdeII GATC 5 cut(s) 105, 115, 267, 412, 913
NgoMIV GCCGGC 3 cut(s) 362, 641, 953
NlaIV GGNNCC 2 cut(s) 535, 978
NmeAIII GCCGAG 1 cut(s) 696
NmuCI GTSAC 2 cut(s) 248, 728
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 2 cut(s) 10, 937
PaeI GCATGC 1 cut(s) 10
PciI ACATGT 1 cut(s) 933
PdiI GCCGGC 3 cut(s) 364, 643, 955
PdmI GAANNNNTTC 1 cut(s) 1119
PfeI GAWTC 3 cut(s) 399, 602, 1126
PinAI ACCGGT 1 cut(s) 1179
PkrI GCNGC 3 cut(s) 190, 625, 1090
PleI GAGTC 3 cut(s) 208, 814, 1005
PpsI GAGTC 3 cut(s) 208, 814, 1005
PscI ACATGT 1 cut(s) 933
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 1 cut(s) 1160
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 177, 346
PspGI CCWGG 2 cut(s) 177, 346
PspN4I GGNNCC 2 cut(s) 535, 978
RsaI GTAC 5 cut(s) 535, 584, 932, 1054, 1178
RsaNI GTAC 5 cut(s) 534, 583, 931, 1053, 1177
RseI CAYNNNNRTG 2 cut(s) 129, 324
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 3 cut(s) 36, 438, 990
SatI GCNGC 3 cut(s) 189, 624, 1089
Sau3AI GATC 5 cut(s) 105, 115, 267, 412, 913
SchI GAGTC 3 cut(s) 209, 815, 1006
ScrFI CCNGG 4 cut(s) 179, 236, 348, 690
SduI GDGCHC 2 cut(s) 149, 979
SetI ASST 7 cut(s) 65, 149, 335, 381, 584, 631, 1093
SfaNI GCATC 2 cut(s) 316, 1053
SmiMI CAYNNNNRTG 2 cut(s) 129, 324
SphI GCATGC 1 cut(s) 10
Sse9I AATT 7 cut(s) 224, 439, 451, 743, 832, 1011, 1146
SsiI CCGC 5 cut(s) 232, 396, 549, 720, 1046
SspI AATATT 1 cut(s) 1214
SspMI CTAG 2 cut(s) 701, 1076
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 4 cut(s) 177, 234, 346, 688
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 6 cut(s) 278, 464, 488, 652, 775, 904
TaqI TCGA 6 cut(s) 114, 522, 528, 885, 897, 1028
TasI AATT 7 cut(s) 224, 439, 451, 743, 832, 1011, 1146
TatI WGTACW 1 cut(s) 930
TfiI GAWTC 3 cut(s) 399, 602, 1126
Tru1I TTAA 3 cut(s) 36, 438, 990
Tru9I TTAA 3 cut(s) 36, 438, 990
TscAI CASTG 1 cut(s) 281
TseFI GTSAC 2 cut(s) 248, 728
TseI GCWGC 3 cut(s) 188, 623, 1088
Tsp45I GTSAC 2 cut(s) 248, 728
TspDTI ATGAA 7 cut(s) 432, 695, 878, 880, 999, 1037, 1155
TspRI CASTG 1 cut(s) 281
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 2 cut(s) 224, 743
XceI RCATGY 2 cut(s) 10, 937
XmnI GAANNNNTTC 1 cut(s) 1119
XspI CTAG 2 cut(s) 701, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.