Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

59978930 .. 59981599

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGTGAAAGAGGGAATTGCACTGGATATGCTGCAAGGGATCCATCTGGAGTTCTATCCCATTATGAATTTAGACGCAGGGATCTTGGAACCGATGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGATTTGGACCAGAAATAAGCATGGAGACTCCAAGTACCCTCTAGTGCCTGGACATGAGATTGCGGGTATTGTAAAAGAGGTAGGTTCAAATGTCAAGCGGTTCAAAGTCGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCATGCAGAGATTGTGAGTATTGCAATGATGGACTTGAAGTTCAGTGTGTAAAGGGATCTGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCACATAGTTGTTCACGATAGGTACTGCTACAAGATACCTGATAACTATCCATTGGCTTCCGCAGCACCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCTATGATGCGCCATAAGATGAACCAACCCGGTAAATCTCTAGGCGTGATTGGGCTTGGTGGTCTTGGTCACATGGCAGTGAAGTTTGGAAAGGCATTTGGTTTGAATGTAACAGTTTTCAGCACAAGCATATCCAAGAAAGAGGAAGCCTTAAGTCTGCTTGGTGCAGATAAATTTGTGGTCTCATCTGACCAAGAGCAGATGAAGGCTTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCGTCTGGTGATCACCCATTTGATCCGTACATGGCATTGTTGAAGACTGGTGGAATTTTCGTCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCAAGCCTTAATCTTGGTATGAAAACCATTTCTGGTAGTATAACAGGTGGAACAAAGGATACACAAGAAATGATAGATTTCTGTGCTGCTCATGGAATCCACCCAATGATTGAAGTAATTCCAATTCAATATGCAAATGAAGCTATTGACAGGCTTACAAAAAGAGATGTGAAATACCGGTTTGTGATTGACATTGAAAATTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

352

Amino Acids

38.25

Weight (kDa)

7.16

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	31 - 149	2.5e-25	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	189 - 311	1.2e-19	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	222 - 337	1.7e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	123, 206, 241, 465
AclWI	GGATC	5 cut(s)	35, 48, 90, 349, 764
AcsI	RAATTY	5 cut(s)	68, 677, 801, 836, 1045
AfaI	GTAC	4 cut(s)	179, 379, 428, 776
AflII	CTTAAG	1 cut(s)	655
AgeI	ACCGGT	1 cut(s)	1023
AgsI	TTSAA	8 cut(s)	231, 247, 323, 610, 790, 959, 974, 1043
AhdI	GACNNNNNGTC	1 cut(s)	748
AjnI	CCWGG	1 cut(s)	190
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	1 cut(s)	989
AluI	AGCT	1 cut(s)	989
Alw26I	GTCTC	2 cut(s)	162, 691
AlwI	GGATC	5 cut(s)	35, 48, 90, 349, 764
AlwNI	CAGNNNCTG	1 cut(s)	752
ApeKI	GCWGC	3 cut(s)	32, 467, 932
ApoI	RAATTY	5 cut(s)	68, 677, 801, 836, 1045
AsiGI	ACCGGT	1 cut(s)	1023
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	4 cut(s)	266, 730, 752, 767
AvaII	GGWCC	1 cut(s)	150
BaeI	ACNNNNGTAYC	2 cut(s)	388, 421
BamHI	GGATCC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	797
BbvI	GCAGC	3 cut(s)	19, 479, 919
BccI	CCATC	3 cut(s)	52, 308, 368
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	2 cut(s)	389, 898
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	162, 691
BfaI	CTAG	2 cut(s)	185, 545
BfrI	CTTAAG	1 cut(s)	655
BfuI	GTATCC	2 cut(s)	389, 898
BisI	GCNGC	3 cut(s)	33, 468, 933
BlsI	GCNGC	3 cut(s)	34, 469, 934
Bme1390I	CCNGG	2 cut(s)	192, 534
Bme18I	GGWCC	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	748
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	42, 91, 274
BmrFI	CCNGG	2 cut(s)	192, 534
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	2 cut(s)	358, 501
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	797
BpmI	CTGGAG	2 cut(s)	69, 385
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	1023
Bse118I	RCCGGY	1 cut(s)	1023
Bse1I	ACTGG	4 cut(s)	28, 402, 799, 825
Bse3DI	GCAATG	2 cut(s)	118, 316
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	450
BseMI	GCAATG	2 cut(s)	118, 316
BseNI	ACTGG	4 cut(s)	28, 402, 799, 825
BseXI	GCAGC	3 cut(s)	19, 479, 919
BsgI	GTGCAG	1 cut(s)	690
BshTI	ACCGGT	1 cut(s)	1023
BsiSI	CCGG	2 cut(s)	534, 1024
BsmAI	GTCTC	2 cut(s)	162, 691
Bso31I	GGTCTC	1 cut(s)	691
Bsp143I	GATC	5 cut(s)	40, 82, 341, 757, 769
BspACI	CCGC	4 cut(s)	123, 206, 241, 465
BspLI	GGNNCC	3 cut(s)	42, 91, 274
BspPI	GGATC	5 cut(s)	35, 48, 90, 349, 764
BspTI	CTTAAG	1 cut(s)	655
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	2 cut(s)	118, 316
BsrFI	RCCGGY	1 cut(s)	1023
BsrI	ACTGG	4 cut(s)	28, 402, 799, 825
BssAI	RCCGGY	1 cut(s)	1023
BssMI	GATC	5 cut(s)	40, 82, 341, 757, 769
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	496, 619
BstAFI	CTTAAG	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	850
BstEII	GGTNACC	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	5 cut(s)	43, 85, 344, 760, 772
BstMAI	GTCTC	2 cut(s)	162, 691
BstMBI	GATC	5 cut(s)	40, 82, 341, 757, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 986
BstNI	CCWGG	1 cut(s)	192
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	190, 532
BstV1I	GCAGC	3 cut(s)	19, 479, 919
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	3 cut(s)	40, 82, 341
BstYI	RGATCY	3 cut(s)	40, 82, 341
BsuI	GTATCC	2 cut(s)	389, 898
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	4 cut(s)	21, 335, 588, 832
Cac8I	GCNNGC	1 cut(s)	850
CaiI	CAGNNNCTG	1 cut(s)	752
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	1023
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	2 cut(s)	84, 738
Csp6I	GTAC	4 cut(s)	178, 378, 427, 775
CspAI	ACCGGT	1 cut(s)	1023
CviAII	CATG	7 cut(s)	164, 197, 260, 288, 577, 778, 938
CviJI	RGCY	7 cut(s)	461, 559, 653, 713, 852, 989, 1000
CviKI_1	RGCY	7 cut(s)	461, 559, 653, 713, 852, 989, 1000
CviQI	GTAC	4 cut(s)	178, 378, 427, 775
DpnI	GATC	5 cut(s)	42, 84, 343, 759, 771
DpnII	GATC	5 cut(s)	40, 82, 341, 757, 769
DriI	GACNNNNNGTC	1 cut(s)	748
Eam1105I	GACNNNNNGTC	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	7 cut(s)	167, 200, 263, 291, 580, 781, 941
FatI	CATG	7 cut(s)	163, 196, 259, 287, 576, 777, 937
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	3 cut(s)	33, 468, 933
Fsp4HI	GCNGC	3 cut(s)	33, 468, 933
FspBI	CTAG	2 cut(s)	185, 545
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	3 cut(s)	33, 468, 933
GsuI	CTGGAG	2 cut(s)	69, 385
HapII	CCGG	2 cut(s)	534, 1024
HgaI	GACGC	2 cut(s)	84, 738
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	7 cut(s)	167, 200, 263, 291, 580, 781, 941
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	2 cut(s)	283, 742
HindII	GTYRAC	2 cut(s)	283, 742
HinfI	GANTC	3 cut(s)	170, 819, 942
HpaII	CCGG	2 cut(s)	534, 1024
HphI	GGTGA	4 cut(s)	266, 730, 752, 767
Hpy166II	GTNNAC	3 cut(s)	283, 418, 742
Hpy188I	TCNGA	1 cut(s)	694
Hpy188III	TCNNGA	2 cut(s)	48, 419
Hpy8I	GTNNAC	3 cut(s)	283, 418, 742
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	2 cut(s)	496, 619
HpyCH4V	TGCA	7 cut(s)	21, 35, 291, 309, 671, 848, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 986
Hsp92II	CATG	7 cut(s)	167, 200, 263, 291, 580, 781, 941
HspAI	GCGC	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	40, 82, 341, 757, 769
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	19, 479, 919
LweI	GCATC	2 cut(s)	358, 501
MaeI	CTAG	2 cut(s)	185, 545
MaeIII	GTNAC	5 cut(s)	254, 404, 572, 613, 723
MalI	GATC	5 cut(s)	42, 84, 343, 759, 771
MboI	GATC	5 cut(s)	40, 82, 341, 757, 769
MboII	GAAGA	1 cut(s)	802
MflI	RGATCY	3 cut(s)	40, 82, 341
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	5, 192, 214, 640
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	3 cut(s)	357, 656, 855
MslI	CAYNNNNRTG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	655
MspI	CCGG	2 cut(s)	534, 1024
MspR9I	CCNGG	2 cut(s)	192, 534
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	467, 986
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	5 cut(s)	40, 82, 341, 757, 769
NlaIII	CATG	7 cut(s)	167, 200, 263, 291, 580, 781, 941
NlaIV	GGNNCC	3 cut(s)	42, 91, 274
NmuCI	GTSAC	4 cut(s)	254, 404, 572, 723
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	2 cut(s)	819, 942
PinAI	ACCGGT	1 cut(s)	1023
PkrI	GCNGC	3 cut(s)	34, 469, 934
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	190
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	42, 91, 274
PspPI	GGNCC	1 cut(s)	150
PsrI	GAACNNNNNNTAC	2 cut(s)	889, 921
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	3 cut(s)	40, 82, 341
RsaI	GTAC	4 cut(s)	179, 379, 428, 776
RsaNI	GTAC	4 cut(s)	178, 378, 427, 775
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	357, 656, 855
SatI	GCNGC	3 cut(s)	33, 468, 933
Sau3AI	GATC	5 cut(s)	40, 82, 341, 757, 769
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	192, 534
SetI	ASST	8 cut(s)	225, 229, 278, 428, 445, 475, 895, 991
SfaNI	GCATC	2 cut(s)	358, 501
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SsiI	CCGC	4 cut(s)	123, 206, 241, 465
SspMI	CTAG	2 cut(s)	185, 545
StyD4I	CCNGG	2 cut(s)	190, 532
TaaI	ACNGT	2 cut(s)	496, 619
TfiI	GAWTC	2 cut(s)	819, 942
Tru1I	TTAA	3 cut(s)	357, 656, 855
Tru9I	TTAA	3 cut(s)	357, 656, 855
TscAI	CASTG	4 cut(s)	28, 335, 588, 832
TseFI	GTSAC	4 cut(s)	254, 404, 572, 723
TseI	GCWGC	3 cut(s)	32, 467, 932
Tsp45I	GTSAC	4 cut(s)	254, 404, 572, 723
TspDTI	ATGAA	5 cut(s)	81, 539, 722, 881, 999
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	4 cut(s)	28, 335, 588, 832
Vha464I	CTTAAG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	5 cut(s)	68, 677, 801, 836, 1045
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	2 cut(s)	185, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.