Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

10432765 .. 10435170

Gene Structure 2406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1119900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAATCTGGAGAATCTTCAAAACGATGATGTTTCGATAAGAATTACGCACTGCGGAATTTGTTATGCTGATGTGGGTTTTCCAAGGAACAAGGATGGCAACGCCAAGTATCCAATGGTGCCTGGACATGAGATTGCTGGCATTGTTCAAGAGGTTGGTCCAAATGTTCACGGCTTCAAAGTTGGTGATCATGTTGGAGTGGGAACTTTTGTTAATTCTTGTAGAGATTGCGACTATTGTAGAGATGGCCAAGAGGTTTCCTGTGAAAAGGGAGCAATTTTCACTTATAACCATGTTGATGCTGATGGCACCATTACAAAAGGAGGGTTTTCCAGTTACATTGTTGCTCATGAAAGGTACTGCTTCAAGATACCAGAGGGCTACCCCTTGGCTTCTGCAGCACCTCTGCTTTGTGCCGGCATTACTGTTTATTCTCCAATGATCCGCCATAAAATGAACCAGGCAGGTAAATCACTAGGTGTGATTGGCCTTGGTGGTCTCGGACACTTGGCAGTGAAATTTGGGAAGGCTTTTGGACTAAACGTGACAGTTTTCAGCACAAGCTTATCAAAGAAGGAAGAAGCTCTAAGTCTGCTTGGTGCAGACAATTTCGTTGTCTCATCCAACCAAGAGGAAATGACGGCCCTGGCTAAGTCCCTTGACTTCATCATCGACACAGCATCTGGTGATCATCCATTTGATTTGTATATGTCTCTGCTGAAGACTGCTGGTGTTCTAGTCTTGGTTGGGGCACCAAGCGAAGTTAAATTAAGTCCTATGAGCTTGATTTATGGTATGAAGTCGATTTCTGGTAGCGTAACGGGCGGTACAAAACAGACGCGGGAAATGTTAGACTTTTGTGCTGCTCACAAAATATATCCAAACATAGAAATAGTTCCAATTCAGTATGTGAATGAAGCTCTTGAGAGGCTGATCAAGAGGGATGTGAAGTACCGTTTTGTTATAGATGTCGAAAACTCCCTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

330

Amino Acids

35.61

Weight (kDa)

6.2

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	8 - 126	5.7e-27	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	166 - 288	5.6e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	3 cut(s)	118, 308, 751
AccII	CGCG	1 cut(s)	841
AciI	CCGC	4 cut(s)	54, 445, 825, 841
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	57, 518
AcuI	CTGAAG	1 cut(s)	740
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	3 cut(s)	359, 829, 953
AgsI	TTSAA	4 cut(s)	20, 149, 178, 367
AjnI	CCWGG	3 cut(s)	121, 459, 645
AluBI	AGCT	4 cut(s)	564, 584, 783, 920
AluI	AGCT	4 cut(s)	564, 584, 783, 920
Alw26I	GTCTC	3 cut(s)	503, 622, 717
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	247, 487, 642
ApeKI	GCWGC	2 cut(s)	398, 863
ApoI	RAATTY	2 cut(s)	57, 518
Asp700I	GAANNNNTTC	1 cut(s)	894
AspS9I	GGNCC	2 cut(s)	158, 643
AsuHPI	GGTGA	2 cut(s)	197, 698
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	249
BanI	GGYRCC	3 cut(s)	118, 308, 751
BbsI	GAAGAC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	410, 850
BccI	CCATC	3 cut(s)	89, 239, 299
BceAI	ACGGC	2 cut(s)	187, 657
BciT130I	CCWGG	3 cut(s)	123, 461, 647
BciVI	GTATCC	1 cut(s)	120
BclI	TGATCA	3 cut(s)	187, 688, 933
BcoDI	GTCTC	3 cut(s)	503, 622, 717
BfaI	CTAG	2 cut(s)	476, 737
BfmI	CTRYAG	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	120
BisI	GCNGC	2 cut(s)	399, 864
BlsI	GCNGC	2 cut(s)	400, 865
Bme1390I	CCNGG	3 cut(s)	123, 461, 647
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	158, 643
BmiI	GGNNCC	3 cut(s)	120, 310, 753
BmrFI	CCNGG	3 cut(s)	123, 461, 647
BmsI	GCATC	2 cut(s)	289, 689
BpiI	GAAGAC	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	944
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	83, 387, 490, 645
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	333
BseBI	CCWGG	3 cut(s)	123, 461, 647
BseDI	CCNNGG	4 cut(s)	83, 387, 490, 645
BseGI	GGATG	4 cut(s)	100, 620, 691, 949
BseNI	ACTGG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	754
BseXI	GCAGC	2 cut(s)	410, 850
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	841
BshFI	GGCC	3 cut(s)	249, 489, 644
BshNI	GGYRCC	3 cut(s)	118, 308, 751
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	640
BsmAI	GTCTC	3 cut(s)	503, 622, 717
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	249, 489, 644
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	4 cut(s)	187, 441, 688, 933
BspACI	CCGC	4 cut(s)	54, 445, 825, 841
BspANI	GGCC	3 cut(s)	249, 489, 644
BspFNI	CGCG	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	120, 310, 753
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	3 cut(s)	118, 308, 751
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	4 cut(s)	83, 387, 490, 645
BssMI	GATC	4 cut(s)	187, 441, 688, 933
BssT1I	CCWWGG	3 cut(s)	83, 387, 490
Bst2UI	CCWGG	3 cut(s)	123, 461, 647
Bst4CI	ACNGT	3 cut(s)	427, 550, 956
BstC8I	GCNNGC	2 cut(s)	139, 418
BstDEI	CTNAG	2 cut(s)	587, 651
BstF5I	GGATG	4 cut(s)	100, 620, 691, 949
BstFNI	CGCG	1 cut(s)	841
BstKTI	GATC	4 cut(s)	190, 444, 691, 936
BstMAI	GTCTC	3 cut(s)	503, 622, 717
BstMBI	GATC	4 cut(s)	187, 441, 688, 933
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 822
BstNI	CCWGG	3 cut(s)	123, 461, 647
BstSCI	CCNGG	3 cut(s)	121, 459, 645
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	754
BstUI	CGCG	1 cut(s)	841
BstV1I	GCAGC	2 cut(s)	410, 850
BstV2I	GAAGAC	1 cut(s)	728
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	249, 489, 644
BtsCI	GGATG	4 cut(s)	100, 620, 691, 949
BtsI	GCAGTG	2 cut(s)	49, 519
BtsIMutI	CAGTG	2 cut(s)	49, 519
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	139, 418
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	2 cut(s)	158, 643
CseI	GACGC	1 cut(s)	847
Csp6I	GTAC	3 cut(s)	358, 828, 952
CviAII	CATG	4 cut(s)	128, 191, 293, 350
CviQI	GTAC	3 cut(s)	358, 828, 952
DdeI	CTNAG	2 cut(s)	587, 651
DpnI	GATC	4 cut(s)	189, 443, 690, 935
DpnII	GATC	4 cut(s)	187, 441, 688, 933
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	3 cut(s)	83, 387, 490
Eco31I	GGTCTC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	121, 459, 645
EcoT14I	CCWWGG	3 cut(s)	83, 387, 490
ErhI	CCWWGG	3 cut(s)	83, 387, 490
FaeI	CATG	4 cut(s)	131, 194, 296, 353
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	127, 190, 292, 349
FauI	CCCGC	1 cut(s)	834
FbaI	TGATCA	3 cut(s)	187, 688, 933
Fnu4HI	GCNGC	2 cut(s)	399, 864
FokI	GGATG	4 cut(s)	107, 607, 678, 956
Fsp4HI	GCNGC	2 cut(s)	399, 864
FspBI	CTAG	2 cut(s)	476, 737
GluI	GCNGC	2 cut(s)	399, 864
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	249, 489, 644
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	847
Hin1II	CATG	4 cut(s)	131, 194, 296, 353
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	4, 13
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	2 cut(s)	197, 698
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	503
Hpy188III	TCNNGA	6 cut(s)	8, 149, 350, 367, 923, 937
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	520, 568
HpyCH4III	ACNGT	3 cut(s)	427, 550, 956
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	2 cut(s)	398, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 822
HpyF3I	CTNAG	2 cut(s)	587, 651
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	131, 194, 296, 353
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Ksp22I	TGATCA	3 cut(s)	187, 688, 933
Kzo9I	GATC	4 cut(s)	187, 441, 688, 933
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	2 cut(s)	410, 850
LweI	GCATC	2 cut(s)	289, 689
MaeI	CTAG	2 cut(s)	476, 737
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	3 cut(s)	335, 544, 817
MalI	GATC	4 cut(s)	189, 443, 690, 935
MboI	GATC	4 cut(s)	187, 441, 688, 933
MboII	GAAGA	3 cut(s)	8, 590, 733
MhlI	GDGCHC	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	8 cut(s)	42, 57, 214, 276, 518, 607, 767, 900
MluNI	TGGCCA	1 cut(s)	249
MmeI	TCCRAC	2 cut(s)	175, 648
MnlI	CCTC	8 cut(s)	145, 247, 317, 370, 414, 625, 921, 933
Mox20I	TGGCCA	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	894
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	3 cut(s)	213, 765, 770
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	249
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	3 cut(s)	123, 461, 647
MvaI	CCWGG	3 cut(s)	123, 461, 647
MvnI	CGCG	1 cut(s)	841
MwoI	GCNNNNNNNGC	2 cut(s)	398, 822
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	4 cut(s)	187, 441, 688, 933
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	131, 194, 296, 353
NlaIV	GGNNCC	3 cut(s)	120, 310, 753
NmuCI	GTSAC	1 cut(s)	544
PagI	TCATGA	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	894
PfeI	GAWTC	2 cut(s)	4, 13
PkrI	GCNGC	2 cut(s)	400, 865
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	3 cut(s)	121, 459, 645
PspGI	CCWGG	3 cut(s)	121, 459, 645
PspN4I	GGNNCC	3 cut(s)	120, 310, 753
PspPI	GGNCC	2 cut(s)	158, 643
PstI	CTGCAG	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	3 cut(s)	359, 829, 953
RsaNI	GTAC	3 cut(s)	358, 828, 952
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	213, 765, 770
SatI	GCNGC	2 cut(s)	399, 864
Sau3AI	GATC	4 cut(s)	187, 441, 688, 933
Sau96I	GGNCC	2 cut(s)	158, 643
ScrFI	CCNGG	3 cut(s)	123, 461, 647
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	2 cut(s)	289, 689
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	8 cut(s)	42, 57, 214, 276, 518, 607, 767, 900
SsiI	CCGC	4 cut(s)	54, 445, 825, 841
SspMI	CTAG	2 cut(s)	476, 737
StyD4I	CCNGG	3 cut(s)	121, 459, 645
StyI	CCWWGG	3 cut(s)	83, 387, 490
TaaI	ACNGT	3 cut(s)	427, 550, 956
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	4 cut(s)	35, 672, 803, 972
TasI	AATT	8 cut(s)	42, 57, 214, 276, 518, 607, 767, 900
TfiI	GAWTC	2 cut(s)	4, 13
Tru1I	TTAA	3 cut(s)	213, 765, 770
Tru9I	TTAA	3 cut(s)	213, 765, 770
TscAI	CASTG	2 cut(s)	56, 519
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	2 cut(s)	398, 863
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	6 cut(s)	17, 366, 470, 655, 812, 930
TspRI	CASTG	2 cut(s)	56, 519
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	57, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	894
XspI	CTAG	2 cut(s)	476, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.