Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

59405 .. 61721

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgtttggggacaagtcaataatgagtgaaaaagggaattgcattggatatgctgcaagggatccatctggagttctatctcattatgaatttagccgcagggatcttggaaccgatgatgtttccataagaattactcattgcggagtttgttatgctgatgtgatttggaccagaaataagcatggagactccaagtaccctctagtgcctggacacgagattgcgggtattgtaaaagaggtcggttcaaatgttaagcggttcaaagtcggtgaccatgttggagtgggaacctatgtcaactcatgcagagattgtgagtattgcaatgatggacttgaagttcagtgcgtaaagggatcagttttcacttttaatggtgttgatgctgatggtacaattacgaaagggggatactccagtcacatagttgttcacgataggtactgctacaagatacctgataactatccattggcttccgcagcacctttgctttgtgctggaattactgtttatgctcctatgatgcgccataagatgaaccaacccggtaaatctctaggcgtgattgggcttggtggtcttggtcacatggcagtgaaatttggaaaggcatttggtttgaatgtaacagttttcagcacaagcataaccaagaaagaggaagccttaagtcagcttggtgcagataaatttgtggtctcatctgaccaagagcagatgaaggctttggtgaagtcacttgactttatagttgacacagcgtctggtgatcacccatttgatccatacatggcattgttaaagacgggtggaattttcgtcttggtgggattccccagtgaaatcaaattcagtcctgcaagccttaatcttggtatgaaaaccatttctggtagtttaacaggtggaacaaaggatacacaggaaatgatagatttctgtgctgctcatggaatccacccaatgattgaagtaattccaattcaatatgcaaatgaagctattgacaggcttacaaaaagagatgtgaaataccggtttgtgattgacattgaaaactccctgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

359

Amino Acids

38.99

Weight (kDa)

6.85

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	97, 144, 227, 262, 486
AclWI	GGATC	5 cut(s)	56, 69, 111, 370, 785
AcsI	RAATTY	5 cut(s)	89, 608, 698, 822, 857
AfaI	GTAC	3 cut(s)	200, 400, 449
AflII	CTTAAG	1 cut(s)	676
AgeI	ACCGGT	1 cut(s)	1044
AgsI	TTSAA	7 cut(s)	252, 268, 344, 631, 980, 995, 1064
AhdI	GACNNNNNGTC	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	211
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	685, 1010
AluI	AGCT	2 cut(s)	685, 1010
Alw26I	GTCTC	2 cut(s)	183, 712
AlwI	GGATC	5 cut(s)	56, 69, 111, 370, 785
AlwNI	CAGNNNCTG	1 cut(s)	773
ApeKI	GCWGC	3 cut(s)	53, 488, 953
ApoI	RAATTY	5 cut(s)	89, 608, 698, 822, 857
AsiGI	ACCGGT	1 cut(s)	1044
Asp700I	GAANNNNTTC	1 cut(s)	984
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	4 cut(s)	287, 751, 773, 788
AvaII	GGWCC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BamHI	GGATCC	1 cut(s)	61
BauI	CACGAG	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	40, 500, 940
BccI	CCATC	3 cut(s)	73, 329, 389
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	2 cut(s)	410, 919
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	183, 712
BfaI	CTAG	2 cut(s)	206, 566
BfrI	CTTAAG	1 cut(s)	676
BfuI	GTATCC	2 cut(s)	410, 919
BisI	GCNGC	4 cut(s)	54, 97, 489, 954
BlsI	GCNGC	4 cut(s)	55, 98, 490, 955
Bme1390I	CCNGG	2 cut(s)	213, 555
Bme18I	GGWCC	1 cut(s)	171
BmeRI	GACNNNNNGTC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	63, 112, 295
BmrFI	CCNGG	2 cut(s)	213, 555
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	379, 522
BmuI	ACTGGG	1 cut(s)	840
BpmI	CTGGAG	2 cut(s)	90, 406
BpuMI	CCSGG	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	712
BsaWI	WCCGGW	1 cut(s)	1044
Bse118I	RCCGGY	1 cut(s)	1044
Bse1I	ACTGG	2 cut(s)	423, 846
Bse3DI	GCAATG	2 cut(s)	139, 337
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	471
BseMI	GCAATG	2 cut(s)	139, 337
BseNI	ACTGG	2 cut(s)	423, 846
BseXI	GCAGC	3 cut(s)	40, 500, 940
BsgI	GTGCAG	1 cut(s)	711
BshTI	ACCGGT	1 cut(s)	1044
BsiSI	CCGG	2 cut(s)	555, 1045
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	183, 712
BsmFI	GGGAC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	712
Bsp143I	GATC	5 cut(s)	61, 103, 362, 778, 790
BspACI	CCGC	5 cut(s)	97, 144, 227, 262, 486
BspLI	GGNNCC	3 cut(s)	63, 112, 295
BspPI	GGATC	5 cut(s)	56, 69, 111, 370, 785
BspTI	CTTAAG	1 cut(s)	676
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	2 cut(s)	139, 337
BsrFI	RCCGGY	1 cut(s)	1044
BsrI	ACTGG	2 cut(s)	423, 846
BssAI	RCCGGY	1 cut(s)	1044
BssMI	GATC	5 cut(s)	61, 103, 362, 778, 790
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	517, 640
BstAFI	CTTAAG	1 cut(s)	676
BstC8I	GCNNGC	1 cut(s)	871
BstEII	GGTNACC	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	5 cut(s)	64, 106, 365, 781, 793
BstMAI	GTCTC	2 cut(s)	183, 712
BstMBI	GATC	5 cut(s)	61, 103, 362, 778, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 1007
BstNI	CCWGG	1 cut(s)	213
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	211, 553
BstV1I	GCAGC	3 cut(s)	40, 500, 940
BstX2I	RGATCY	2 cut(s)	61, 103
BstYI	RGATCY	2 cut(s)	61, 103
BsuI	GTATCC	2 cut(s)	410, 919
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	356, 609, 853
Cac8I	GCNNGC	1 cut(s)	871
CaiI	CAGNNNCTG	1 cut(s)	773
CfoI	GCGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	1044
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	759
Csp6I	GTAC	3 cut(s)	199, 399, 448
CspAI	ACCGGT	1 cut(s)	1044
CviAII	CATG	6 cut(s)	185, 281, 309, 598, 799, 959
CviJI	RGCY	9 cut(s)	96, 482, 580, 674, 685, 734, 873, 1010, 1021
CviKI_1	RGCY	9 cut(s)	96, 482, 580, 674, 685, 734, 873, 1010, 1021
CviQI	GTAC	3 cut(s)	199, 399, 448
DpnI	GATC	5 cut(s)	63, 105, 364, 780, 792
DpnII	GATC	5 cut(s)	61, 103, 362, 778, 790
DriI	GACNNNNNGTC	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	769
Eco31I	GGTCTC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	211
FaeI	CATG	6 cut(s)	188, 284, 312, 601, 802, 962
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	6 cut(s)	184, 280, 308, 597, 798, 958
FauI	CCCGC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	4 cut(s)	54, 97, 489, 954
Fsp4HI	GCNGC	4 cut(s)	54, 97, 489, 954
FspBI	CTAG	2 cut(s)	206, 566
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	4 cut(s)	54, 97, 489, 954
GsuI	CTGGAG	2 cut(s)	90, 406
HapII	CCGG	2 cut(s)	555, 1045
HgaI	GACGC	1 cut(s)	759
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	6 cut(s)	188, 284, 312, 601, 802, 962
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	2 cut(s)	304, 763
HindII	GTYRAC	2 cut(s)	304, 763
HinfI	GANTC	3 cut(s)	191, 840, 963
HpaII	CCGG	2 cut(s)	555, 1045
HphI	GGTGA	4 cut(s)	287, 751, 773, 788
Hpy166II	GTNNAC	3 cut(s)	304, 439, 763
Hpy188I	TCNGA	1 cut(s)	715
Hpy188III	TCNNGA	2 cut(s)	69, 440
Hpy8I	GTNNAC	3 cut(s)	304, 439, 763
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	2 cut(s)	517, 640
HpyCH4V	TGCA	7 cut(s)	42, 56, 312, 330, 692, 869, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 1007
Hsp92II	CATG	6 cut(s)	188, 284, 312, 601, 802, 962
HspAI	GCGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	61, 103, 362, 778, 790
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	3 cut(s)	40, 500, 940
LweI	GCATC	2 cut(s)	379, 522
MaeI	CTAG	2 cut(s)	206, 566
MaeIII	GTNAC	5 cut(s)	275, 425, 593, 634, 744
MalI	GATC	5 cut(s)	63, 105, 364, 780, 792
MboI	GATC	5 cut(s)	61, 103, 362, 778, 790
MflI	RGATCY	2 cut(s)	61, 103
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	213, 235, 661
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	6 cut(s)	258, 378, 677, 809, 876, 908
MslI	CAYNNNNRTG	1 cut(s)	602
MspCI	CTTAAG	1 cut(s)	676
MspI	CCGG	2 cut(s)	555, 1045
MspR9I	CCNGG	2 cut(s)	213, 555
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	488, 1007
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	5 cut(s)	61, 103, 362, 778, 790
NlaIII	CATG	6 cut(s)	188, 284, 312, 601, 802, 962
NlaIV	GGNNCC	3 cut(s)	63, 112, 295
NmuCI	GTSAC	4 cut(s)	275, 425, 593, 744
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	2 cut(s)	840, 963
PinAI	ACCGGT	1 cut(s)	1044
PkrI	GCNGC	4 cut(s)	55, 98, 490, 955
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	211
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	63, 112, 295
PspPI	GGNCC	1 cut(s)	171
PsrI	GAACNNNNNNTAC	2 cut(s)	910, 942
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	61, 103
RsaI	GTAC	3 cut(s)	200, 400, 449
RsaNI	GTAC	3 cut(s)	199, 399, 448
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	6 cut(s)	258, 378, 677, 809, 876, 908
SatI	GCNGC	4 cut(s)	54, 97, 489, 954
Sau3AI	GATC	5 cut(s)	61, 103, 362, 778, 790
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	213, 555
SetI	ASST	8 cut(s)	246, 299, 449, 466, 496, 687, 916, 1012
SfaNI	GCATC	2 cut(s)	379, 522
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
SsiI	CCGC	5 cut(s)	97, 144, 227, 262, 486
SspMI	CTAG	2 cut(s)	206, 566
StyD4I	CCNGG	2 cut(s)	211, 553
TaaI	ACNGT	2 cut(s)	517, 640
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	840, 963
Tru1I	TTAA	6 cut(s)	258, 378, 677, 809, 876, 908
Tru9I	TTAA	6 cut(s)	258, 378, 677, 809, 876, 908
TscAI	CASTG	3 cut(s)	356, 609, 853
TseFI	GTSAC	4 cut(s)	275, 425, 593, 744
TseI	GCWGC	3 cut(s)	53, 488, 953
Tsp45I	GTSAC	4 cut(s)	275, 425, 593, 744
TspDTI	ATGAA	5 cut(s)	102, 560, 743, 902, 1020
TspRI	CASTG	3 cut(s)	356, 609, 853
Vha464I	CTTAAG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	5 cut(s)	89, 608, 698, 822, 857
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	2 cut(s)	206, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.