Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Reverse (-)

73494313 .. 73496957

Gene Structure 2645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG525100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGATGGTTGGCATGCATTGTGCAAGAGGTTGGTCCAAATGTTCATCGCTTCAAAGTTGGTGACCATGTCGGAGTTGGAACCTATACCGATTCATGTAGAGACTGCGAGTATTGTAACGATGGCCAAGAAAATTACTGTGATAAAGAAGCAGTTTACACTTATAACCGTTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGGTAAGTAGCAAAGCACTATTCAGTAACCAGTACTGCTTTAAAATACTAGAAGATTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTAACTGTTTTCAGCACAATCCTTGTGGCTGCCCTAAGTGAACTCAAATTGAGCCCTTTAAACCTTATTATAGGTAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

177

Amino Acids

19.42

Weight (kDa)

7.6

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	5 - 78	3.1e-11	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AciI	CCGC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	187, 266
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	2 cut(s)	124, 394
ApeKI	GCWGC	2 cut(s)	305, 479
ApoI	RAATTY	1 cut(s)	425
AspA2I	CCTAGG	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	35, 352
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	35, 352
AvrII	CCTAGG	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	317, 466
BccI	CCATC	3 cut(s)	116, 176, 343
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	281, 383
BisI	GCNGC	2 cut(s)	306, 480
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	307, 481
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	2 cut(s)	35, 352
BmgT120I	GGNCC	2 cut(s)	35, 352
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	196, 371, 382, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	196, 371, 382, 397
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	317, 466
BshFI	GGCC	2 cut(s)	126, 396
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	126, 396
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	1 cut(s)	402
BspANI	GGCC	2 cut(s)	126, 396
BspLI	GGNNCC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	196, 371, 382, 397
BssMI	GATC	1 cut(s)	390
BssT1I	CCWWGG	3 cut(s)	196, 382, 397
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	5 cut(s)	140, 170, 220, 334, 457
BstC8I	GCNNGC	2 cut(s)	16, 325
BstDEI	CTNAG	1 cut(s)	485
BstDSI	CCRYGG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 393
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	317, 466
BsuRI	GGCC	2 cut(s)	126, 396
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	216, 311
Cac8I	GCNNGC	2 cut(s)	16, 325
Cfr13I	GGNCC	2 cut(s)	35, 352
Csp6I	GTAC	2 cut(s)	186, 265
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	7 cut(s)	15, 68, 96, 197, 227, 346, 415
CviJI	RGCY	7 cut(s)	126, 299, 396, 419, 437, 479, 504
CviKI_1	RGCY	7 cut(s)	126, 299, 396, 419, 437, 479, 504
CviQI	GTAC	2 cut(s)	186, 265
DdeI	CTNAG	1 cut(s)	485
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
DraI	TTTAAA	2 cut(s)	274, 510
EaeI	YGGCCR	1 cut(s)	124
Eco130I	CCWWGG	3 cut(s)	196, 382, 397
Eco24I	GRGCYC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	35, 352
Eco57I	CTGAAG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	196, 382, 397
EcoT22I	ATGCAT	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	506
ErhI	CCWWGG	3 cut(s)	196, 382, 397
FaeI	CATG	7 cut(s)	18, 71, 99, 200, 230, 349, 418
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	7 cut(s)	14, 67, 95, 196, 226, 345, 414
Fnu4HI	GCNGC	2 cut(s)	306, 480
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	306, 480
FspBI	CTAG	2 cut(s)	281, 383
GluI	GCNGC	2 cut(s)	306, 480
HaeIII	GGCC	2 cut(s)	126, 396
Hin1II	CATG	7 cut(s)	18, 71, 99, 200, 230, 349, 418
HinfI	GANTC	3 cut(s)	92, 204, 444
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	3 cut(s)	157, 337, 491
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	3 cut(s)	157, 337, 491
HpyCH4III	ACNGT	5 cut(s)	140, 170, 220, 334, 457
HpyCH4V	TGCA	2 cut(s)	18, 25
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 393
HpyF3I	CTNAG	1 cut(s)	485
Hsp92II	CATG	7 cut(s)	18, 71, 99, 200, 230, 349, 418
Kzo9I	GATC	1 cut(s)	390
LpnPI	CCDG	4 cut(s)	275, 309, 357, 384
Lsp1109I	GCAGC	2 cut(s)	317, 466
MaeI	CTAG	2 cut(s)	281, 383
MaeIII	GTNAC	5 cut(s)	62, 116, 257, 410, 451
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	4 cut(s)	133, 189, 425, 497
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	2 cut(s)	52, 58
MnlI	CCTC	2 cut(s)	22, 194
Mox20I	TGGCCA	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	273, 509
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	305, 393
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	7 cut(s)	18, 71, 99, 200, 230, 349, 418
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	62, 410
NsiI	ATGCAT	1 cut(s)	20
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	92, 204
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	307, 481
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PsiI	TTATAA	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	35, 352
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	2 cut(s)	187, 266
RsaNI	GTAC	2 cut(s)	186, 265
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	273, 509
SatI	GCNGC	2 cut(s)	306, 480
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	2 cut(s)	35, 352
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	6 cut(s)	33, 86, 373, 453, 516, 526
SinI	GGWCC	2 cut(s)	35, 352
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	4 cut(s)	133, 189, 425, 497
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	2 cut(s)	281, 383
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	3 cut(s)	196, 382, 397
TaaI	ACNGT	5 cut(s)	140, 170, 220, 334, 457
TasI	AATT	4 cut(s)	133, 189, 425, 497
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	92, 204
Tru1I	TTAA	2 cut(s)	273, 509
Tru9I	TTAA	2 cut(s)	273, 509
TscAI	CASTG	2 cut(s)	223, 318
TseFI	GTSAC	2 cut(s)	62, 410
TseI	GCWGC	2 cut(s)	305, 479
Tsp45I	GTSAC	2 cut(s)	62, 410
TspDTI	ATGAA	4 cut(s)	35, 84, 243, 377
TspRI	CASTG	2 cut(s)	223, 318
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	35, 352
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmaJI	CCTAGG	1 cut(s)	382
XspI	CTAG	2 cut(s)	281, 383
ZrmI	AGTACT	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.