Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

48144688 .. 48145896

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0376800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGAGCCAGAAGAAGATGATGGTTGTTTTTGGGTTAGTTGCGGCTGTGTTTTTACAGTGTGTGGCGGCACAGACGACCCATGTGGTGGGAGGTAGCGTAGGCTGGACCATACCACAGACCGGTGCACAAGAGTATGTCACATGGGCGTCTGGTCAGAAGTTCGTAGTTGGTGATTTTCTGATTTTCAACTTCACGACAAACTCACACGACGTTCTGGAAGTACCCAAAGCATCGTTCGACTCTTGCAGCTCCACCGGCAGCACCATCAAGACCGGCCCGGCCAACATCACTATCAACTCCACCGGCGAACAGTACTACATCTGTACTATCGGCAACCACTGCCAGTCCGGCCAGAAGCTGGCCATCACCGTCTTAACATCCGCCACGTCACCCGGAGGCTCTCCTTCTGCACCATCTCCATCTACCACAGCTAACAACACGCCGGGGGTGACGTTTTGTGCTGGTTTCGTTTTGTGCTCGTTGTCCCTTGTAATGGGATTGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

170

Amino Acids

17.71

Weight (kDa)

6.23

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 119	2e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	88, 361
AciI	CCGC	3 cut(s)	44, 68, 384
AcoI	YGGCCR	3 cut(s)	282, 352, 363
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	3 cut(s)	225, 317, 328
AfiI	CCNNNNNNNGG	4 cut(s)	88, 122, 361, 496
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	252, 361, 434
AluI	AGCT	3 cut(s)	252, 361, 434
Alw21I	GWGCWC	2 cut(s)	130, 482
Alw44I	GTGCAC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	4 cut(s)	277, 282, 352, 363
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	249, 261
AsiGI	ACCGGT	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	108, 278
AsuC2I	CCSGG	3 cut(s)	281, 396, 447
AsuHPI	GGTGA	4 cut(s)	185, 361, 384, 463
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	130, 482
BbvI	GCAGC	2 cut(s)	261, 273
BccI	CCATC	5 cut(s)	16, 275, 374, 424, 430
BcnI	CCSGG	3 cut(s)	281, 396, 447
BglI	GCCNNNNNGGC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	45, 69, 250, 262
BlsI	GCNGC	4 cut(s)	46, 70, 251, 263
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	281, 396, 447
Bme18I	GGWCC	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	108, 278
BmrFI	CCNGG	3 cut(s)	281, 396, 447
BmsI	GCATC	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	281, 396, 447
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 122, 361, 496
Bse118I	RCCGGY	4 cut(s)	122, 257, 275, 305
Bse1I	ACTGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	88, 122, 361, 496
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	261, 273
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	4 cut(s)	279, 284, 354, 365
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	130, 482
BsiSI	CCGG	8 cut(s)	123, 258, 276, 281, 306, 351, 396, 446
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	4 cut(s)	88, 122, 361, 496
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	4 cut(s)	279, 284, 354, 365
Bsp1286I	GDGCHC	2 cut(s)	130, 482
BspACI	CCGC	3 cut(s)	44, 68, 384
BspANI	GGCC	4 cut(s)	279, 284, 354, 365
BsrFI	RCCGGY	4 cut(s)	122, 257, 275, 305
BsrI	ACTGG	1 cut(s)	346
BssAI	RCCGGY	4 cut(s)	122, 257, 275, 305
BssECI	CCNNGG	1 cut(s)	446
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	60, 315, 373
BstACI	GRCGYC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 342, 351
BstSCI	CCNGG	3 cut(s)	279, 394, 445
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	261, 273
BsuRI	GGCC	4 cut(s)	279, 284, 354, 365
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	65, 340
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	361
Cfr10I	RCCGGY	4 cut(s)	122, 257, 275, 305
Cfr13I	GGNCC	2 cut(s)	108, 278
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	224, 316, 327
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	2 cut(s)	83, 144
CviQI	GTAC	3 cut(s)	224, 316, 327
EaeI	YGGCCR	3 cut(s)	282, 352, 363
EciI	GGCGGA	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	108
FaeI	CATG	2 cut(s)	86, 147
FaiI	YATR	4 cut(s)	84, 113, 138, 145
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	82, 143
Fnu4HI	GCNGC	4 cut(s)	45, 69, 250, 262
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	4 cut(s)	45, 69, 250, 262
GluI	GCNGC	4 cut(s)	45, 69, 250, 262
HaeIII	GGCC	4 cut(s)	279, 284, 354, 365
HapII	CCGG	8 cut(s)	123, 258, 276, 281, 306, 351, 396, 446
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	86, 147
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	8 cut(s)	123, 258, 276, 281, 306, 351, 396, 446
HphI	GGTGA	4 cut(s)	185, 361, 384, 463
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	159, 183
Hpy188III	TCNNGA	3 cut(s)	196, 218, 271
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	3 cut(s)	60, 315, 373
HpyCH4IV	ACGT	3 cut(s)	213, 389, 455
HpyCH4V	TGCA	3 cut(s)	128, 249, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 342, 351
HpySE526I	ACGT	3 cut(s)	213, 389, 455
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	86, 147
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	261, 273
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	3 cut(s)	213, 389, 455
MaeIII	GTNAC	3 cut(s)	139, 390, 451
MboII	GAAGA	2 cut(s)	25, 28
MhlI	GDGCHC	2 cut(s)	130, 482
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	86, 392
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	8 cut(s)	123, 258, 276, 281, 306, 351, 396, 446
MspR9I	CCNGG	3 cut(s)	281, 396, 447
MwoI	GCNNNNNNNGC	3 cut(s)	258, 342, 351
NciI	CCSGG	3 cut(s)	281, 396, 447
NlaIII	CATG	2 cut(s)	86, 147
NmuCI	GTSAC	3 cut(s)	139, 390, 451
PflMI	CCANNNNNTGG	2 cut(s)	88, 361
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	46, 70, 251, 263
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	108, 278
PstNI	CAGNNNCTG	1 cut(s)	361
RsaI	GTAC	3 cut(s)	225, 317, 328
RsaNI	GTAC	3 cut(s)	224, 316, 327
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	4 cut(s)	45, 69, 250, 262
Sau96I	GGNCC	2 cut(s)	108, 278
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	281, 396, 447
SduI	GDGCHC	2 cut(s)	130, 482
SetI	ASST	7 cut(s)	97, 216, 254, 363, 392, 436, 458
SfaNI	GCATC	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	108
SsiI	CCGC	3 cut(s)	44, 68, 384
StyD4I	CCNGG	3 cut(s)	279, 394, 445
TaaI	ACNGT	3 cut(s)	60, 315, 373
TaiI	ACGT	3 cut(s)	216, 392, 458
TaqI	TCGA	1 cut(s)	240
TatI	WGTACW	2 cut(s)	315, 326
TauI	GCSGC	2 cut(s)	47, 71
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	2 cut(s)	65, 347
TseFI	GTSAC	3 cut(s)	139, 390, 451
TseI	GCWGC	2 cut(s)	249, 261
Tsp45I	GTSAC	3 cut(s)	139, 390, 451
TspRI	CASTG	2 cut(s)	65, 347
Van91I	CCANNNNNTGG	2 cut(s)	88, 361
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.