Rorug02G0376900

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
48150636 .. 48154322
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0376900.1

Sequence Viewer

Length: 582 bp
ATGGAGAAAGAAATTGTTCCAGCTTCTGAAAAAGAAGGAAAAGATGGGTTTCAGTTTAGGATTCTTGGTCGGCATCTTTGGAGTTCTAATTCTCTCTCATGCCGCTTAATCAACTGTTCAGTGCTGGTCTTTAATCCTATAATCAAGAAGCTGAGAAAACCAAGACTTTTGCTACTCCCAAAGACAGAGGTTTGGACTGGAAACAAAGAGGAAAGTTGGGGATTGAACATTACGTATATTGAGGGATGTACATTGAATAGTGCTTTTTGGTTTTATATTTTATGCATAAAAGTTTTGGCACCATTTTTCTGCTGCTATTTTAGGAACAGTTTGCAGTCAGATTCTTTAACGGTTTTGGATCCAGTTTTACATCTGTACTTGATAGATGATAGTTTTAAAGGGTGGAGATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCAGCACCGATCAATAATATCTCTCATTGGAAATGTGCAGAAATCATAA

Protein Analysis

193

Amino Acids

22.04

Weight (kDa)

8.46

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 499
AciI CCGC 1 cut(s) 103
AclWI GGATC 2 cut(s) 353, 366
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 2 cut(s) 250, 377
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 2 cut(s) 226, 256
AluBI AGCT 3 cut(s) 23, 151, 455
AluI AGCT 3 cut(s) 23, 151, 455
AlwI GGATC 2 cut(s) 353, 366
AlwNI CAGNNNCTG 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 15
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 38, 431
BisI GCNGC 2 cut(s) 103, 313
BlsI GCNGC 2 cut(s) 104, 314
BmiI GGNNCC 2 cut(s) 300, 360
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 3 cut(s) 202, 362, 513
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 3 cut(s) 202, 362, 513
BseXI GCAGC 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 435
BshNI GGYRCC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 3 cut(s) 358, 407, 542
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 300, 360
BspPI GGATC 2 cut(s) 353, 366
BspT107I GGYRCC 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 3 cut(s) 202, 362, 513
BssMI GATC 3 cut(s) 358, 407, 542
Bst4CI ACNGT 3 cut(s) 116, 329, 352
BstAUI TGTACA 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 3 cut(s) 361, 410, 545
BstMBI GATC 3 cut(s) 358, 407, 542
BstSNI TACGTA 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 126, 423
CaiI CAGNNNCTG 1 cut(s) 26
Csp6I GTAC 2 cut(s) 249, 376
CviAII CATG 3 cut(s) 99, 411, 494
CviJI RGCY 3 cut(s) 23, 151, 455
CviKI_1 RGCY 3 cut(s) 23, 151, 455
CviQI GTAC 2 cut(s) 249, 376
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 360, 409, 544
DpnII GATC 3 cut(s) 358, 407, 542
DraI TTTAAA 1 cut(s) 397
Eco105I TACGTA 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 518
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 3 cut(s) 102, 414, 497
FaiI YATR 9 cut(s) 100, 140, 237, 276, 283, 287, 412, 495, 580
FatI CATG 3 cut(s) 98, 410, 493
Fnu4HI GCNGC 2 cut(s) 103, 313
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 103, 313
GluI GCNGC 2 cut(s) 103, 313
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 530
Hin1II CATG 3 cut(s) 102, 414, 497
HinfI GANTC 2 cut(s) 61, 341
Hpy188I TCNGA 2 cut(s) 28, 340
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 116, 329, 352
HpyCH4IV ACGT 2 cut(s) 233, 475
HpyCH4V TGCA 4 cut(s) 285, 334, 416, 571
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 233, 475
Hsp92II CATG 3 cut(s) 102, 414, 497
Kzo9I GATC 3 cut(s) 358, 407, 542
LpnPI CCDG 7 cut(s) 33, 110, 183, 375, 413, 467, 494
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 82
MaeII ACGT 2 cut(s) 233, 475
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 360, 409, 544
MboI GATC 3 cut(s) 358, 407, 542
MboII GAAGA 2 cut(s) 515, 524
MflI RGATCY 1 cut(s) 358
MluCI AATT 3 cut(s) 12, 88, 516
MnlI CCTC 3 cut(s) 181, 202, 235
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 4 cut(s) 107, 132, 347, 396
NdeII GATC 3 cut(s) 358, 407, 542
NlaIII CATG 3 cut(s) 102, 414, 497
NlaIV GGNNCC 2 cut(s) 300, 360
NmuCI GTSAC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 61, 341
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 2 cut(s) 104, 314
Ppu21I YACGTR 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 300, 360
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 250, 377
RsaNI GTAC 2 cut(s) 249, 376
SaqAI TTAA 4 cut(s) 107, 132, 347, 396
SatI GCNGC 2 cut(s) 103, 313
Sau3AI GATC 3 cut(s) 358, 407, 542
SetI ASST 6 cut(s) 25, 153, 192, 236, 457, 478
SfaNI GCATC 1 cut(s) 82
SnaBI TACGTA 1 cut(s) 234
Sse9I AATT 3 cut(s) 12, 88, 516
SsiI CCGC 1 cut(s) 103
TaaI ACNGT 3 cut(s) 116, 329, 352
TaiI ACGT 2 cut(s) 236, 478
TasI AATT 3 cut(s) 12, 88, 516
TatI WGTACW 2 cut(s) 248, 375
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 61, 341
Tru1I TTAA 4 cut(s) 107, 132, 347, 396
Tru9I TTAA 4 cut(s) 107, 132, 347, 396
TscAI CASTG 2 cut(s) 126, 423
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 418
TspRI CASTG 2 cut(s) 126, 423
Van91I CCANNNNNTGG 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.