Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000770

Physical Location & Seq

Genomic Coordinates Forward (+)

14852366 .. 14854136

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGAACTGCGTTGGATATGCTGCAAGGGATCCATCTGGAGTTCTATCCCATTACAAATTCAACCGCAGGTATGGCTCTTGGGGCTGACGATGTTTCCATAAGAATTACTCACTGCGGAGTTTGTTATGCTGATGTGATTTGGTCAAGAAATAAACATGGAGATTCGAAGTATCCTTTGGTGCCTGGACATGAGATCGCAGGTATTGTAAAAGAGGTAGGTTCAAATTGTCATCGCTTCAAAGTTGGCGACCATGTTGGAGTGGGAACTTATGTCAACTCATGCCGAGATTGTGAGTATTGTAATGAGGGACTTGAAGTCGACTGCGTAAAGGGTTCAGTTTACACTTTCAATGCAGTTGATGCGGATGGTACAATTACAAAAGGAGGATACTCCAGTCACATAGTTGTCCATGAAAGATACTGCTTCAAGATACCTGACAACTATCCCTTGGCTTCAGCAGCACCTTTGCTTTGTGCCGGAATTACTGTTTATGCTCCTATGAAGCACCATAAGATGAACCAACCTGGTAAATCTCTAGGAGTGATTGGTCTTGGCGGTCTTGGTCACATGGCAGTGAAGTTTGGCAAGGCATTTGGTTTAAATGTAACAGTTTTTAGCACAAGCATATCCAAGAAAGAGGAAGCTCTAAGCCAACTTGGTGCTGATAAATTTGTGGTTTCATCCGACCAAGAGCAGATGGCGTCACTGGTGAAGTCATTTGACTTCCTAATTGATACAGCATCTGGTGATCACCCATTTGATCCATATATGGCATTGTTGAAGACGGGCGGAACTCTGGCCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCAAGCCTTAATCTGGGGAGGAAAGCCATTTCTGGCAGTGTAACAGGTGGAACAAAGGACACGCAAGAAATGATTGATTTCTGTGCGGCTCAGGGAATTCACCCAATGATTGAAATAATTCCGATTCAATATGCAACTGAAGCGCTCGAGAGGCTAGTGAAGAAAGATGTGAAGTACCGGTTTGTGATCGATATTGAAAGCTCCCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

351

Amino Acids

37.75

Weight (kDa)

6.35

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72680
fragaria_vesca	FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_5g10200 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323 FvH4_6g40323
malus_domestica	MD14G1142100.v1.1 MD17G1119700.v1.1 MD17G1119800.v1.1 MD17G1119900.v1.1
prunus_persica	Prupe.3G194000_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1 Prupe.5G136800_v2.0.a1
pyrus_communis	pycom14g11770 pycom17g11030 pycom17g11040 pycom17g11060
rosa_chinensis	RchiOBHm_Chr2g0142921 RchiOBHm_Chr2g0155511 RchiOBHm_Chr2g0155561 RchiOBHm_Chr7g0188021 RchiOBHm_Chr7g0188031
rosa_laevigata	RLG00000004732 RLG00000020842 RLG00000020844 RLG00000020845
rosa_multiflora	Rmu_co8454251.1_g000001 Rmu_sc0003439.1_g000010 Rmu_sc0003645.1_g000002 Rmu_sc0007929.1_g000001 Rmu_ssc0000422.1_g000013 Rmu_ssc0000422.1_g000015
rosa_roxburghii	Rroxscaffold_2G00093650 Rroxscaffold_3G00266800
rosa_rugosa	Rorug02G0376800 Rorug02G0376900 Rorug02G0447500 Rorug06G0487000 Rorug06G0487000 Rorug06G0487100 Rorug06G0487200 Rorug06G0487300 Rorug06G0487400 Rorug06G0487500
rosa_samantha	Rh2AG429700 Rh2BG438800 Rh2BG524800 Rh2BG525100 Rh2CG415100 Rh2CG499200 Rh2DG448900 Rh2DG533800 Rh7BG093400 Rh7CG092600 Rh7CG092800
rosa_wichuraiana	Rw2G035120 Rw2G042240 Rw2G042250 Rw7G007930 Rw7G007940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	59, 191
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	321
AciI	CCGC	6 cut(s)	66, 117, 365, 558, 792, 926
AclWI	GGATC	3 cut(s)	25, 38, 758
AcsI	RAATTY	4 cut(s)	58, 671, 830, 936
AcuI	CTGAAG	2 cut(s)	441, 999
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	2 cut(s)	373, 1016
AfeI	AGCGCT	1 cut(s)	984
AfiI	CCNNNNNNNGG	1 cut(s)	853
AgeI	ACCGGT	1 cut(s)	1017
AhdI	GACNNNNNGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	184, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	647, 1041
AluI	AGCT	2 cut(s)	647, 1041
AlwI	GGATC	3 cut(s)	25, 38, 758
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	986
Aor51HI	AGCGCT	1 cut(s)	984
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	2 cut(s)	22, 461
ApoI	RAATTY	4 cut(s)	58, 671, 830, 936
AsiGI	ACCGGT	1 cut(s)	1017
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	985
AsuHPI	GGTGA	4 cut(s)	724, 746, 761, 932
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	986
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	791
BbvI	GCAGC	2 cut(s)	9, 473
BccI	CCATC	3 cut(s)	42, 362, 694
BciT130I	CCWGG	2 cut(s)	186, 528
BciVI	GTATCC	2 cut(s)	183, 383
BclI	TGATCA	1 cut(s)	751
BfaI	CTAG	2 cut(s)	539, 995
BfoI	RGCGCY	1 cut(s)	986
BfuAI	ACCTGC	2 cut(s)	59, 191
BfuI	GTATCC	2 cut(s)	183, 383
BisI	GCNGC	3 cut(s)	23, 462, 927
BlsI	GCNGC	3 cut(s)	24, 463, 928
Bme1390I	CCNGG	2 cut(s)	186, 528
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	986
BmiI	GGNNCC	2 cut(s)	32, 183
BmrFI	CCNGG	2 cut(s)	186, 528
BmrI	ACTGGG	1 cut(s)	813
BmsI	GCATC	2 cut(s)	352, 752
BmuI	ACTGGG	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	791
BpmI	CTGGAG	2 cut(s)	59, 379
Bpu10I	CCTNAGC	1 cut(s)	930
Bpu14I	TTCGAA	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	1029
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	450, 804
BsaWI	WCCGGW	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	853
Bse118I	RCCGGY	1 cut(s)	1017
Bse1I	ACTGG	3 cut(s)	396, 714, 819
BseBI	CCWGG	2 cut(s)	186, 528
BseCI	ATCGAT	1 cut(s)	1029
BseDI	CCNNGG	2 cut(s)	450, 804
BseGI	GGATG	2 cut(s)	373, 683
BseLI	CCNNNNNNNGG	1 cut(s)	853
BseMII	CTCAG	1 cut(s)	944
BseNI	ACTGG	3 cut(s)	396, 714, 819
BseXI	GCAGC	2 cut(s)	9, 473
BshFI	GGCC	1 cut(s)	803
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	1017
BshVI	ATCGAT	1 cut(s)	1029
BsiHKCI	CYCGRG	1 cut(s)	986
BsiSI	CCGG	2 cut(s)	480, 1018
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	853
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	803
BsoBI	CYCGRG	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	30, 195, 751, 763, 1026
BspACI	CCGC	6 cut(s)	66, 117, 365, 558, 792, 926
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	1 cut(s)	943
BspDI	ATCGAT	1 cut(s)	1029
BspLI	GGNNCC	2 cut(s)	32, 183
BspMI	ACCTGC	2 cut(s)	59, 191
BspPI	GGATC	3 cut(s)	25, 38, 758
BspT104I	TTCGAA	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	396, 714, 819
BssAI	RCCGGY	1 cut(s)	1017
BssECI	CCNNGG	2 cut(s)	450, 804
BssMI	GATC	5 cut(s)	30, 195, 751, 763, 1026
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	2 cut(s)	450, 804
Bst2UI	CCWGG	2 cut(s)	186, 528
Bst4CI	ACNGT	2 cut(s)	490, 613
BstACI	GRCGYC	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	650, 930
BstF5I	GGATG	2 cut(s)	373, 683
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	1 cut(s)	985
BstKTI	GATC	5 cut(s)	33, 198, 754, 766, 1029
BstMBI	GATC	5 cut(s)	30, 195, 751, 763, 1026
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 83, 362, 461, 980, 991
BstNI	CCWGG	2 cut(s)	186, 528
BstSCI	CCNGG	2 cut(s)	184, 526
BstV1I	GCAGC	2 cut(s)	9, 473
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	1029
BsuI	GTATCC	2 cut(s)	183, 383
BsuRI	GGCC	1 cut(s)	803
BsuTUI	ATCGAT	1 cut(s)	1029
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	373, 683
BtsI	GCAGTG	3 cut(s)	112, 582, 883
BtsIMutI	CAGTG	5 cut(s)	112, 582, 707, 826, 883
BveI	ACCTGC	2 cut(s)	59, 191
Cac8I	GCNNGC	1 cut(s)	844
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	1 cut(s)	985
Cfr10I	RCCGGY	1 cut(s)	1017
ClaI	ATCGAT	1 cut(s)	1029
CseI	GACGC	1 cut(s)	693
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	2 cut(s)	372, 1015
CspAI	ACCGGT	1 cut(s)	1017
CviAII	CATG	6 cut(s)	158, 191, 254, 282, 413, 571
CviQI	GTAC	2 cut(s)	372, 1015
DdeI	CTNAG	2 cut(s)	650, 930
DpnI	GATC	5 cut(s)	32, 197, 753, 765, 1028
DpnII	GATC	5 cut(s)	30, 195, 751, 763, 1026
DraI	TTTAAA	1 cut(s)	603
DriI	GACNNNNNGTC	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	807
Eco130I	CCWWGG	2 cut(s)	450, 804
Eco47III	AGCGCT	1 cut(s)	984
Eco57I	CTGAAG	2 cut(s)	441, 999
Eco88I	CYCGRG	1 cut(s)	986
EcoRI	GAATTC	1 cut(s)	936
EcoRII	CCWGG	2 cut(s)	184, 526
EcoT14I	CCWWGG	2 cut(s)	450, 804
ErhI	CCWWGG	2 cut(s)	450, 804
FaeI	CATG	6 cut(s)	161, 194, 257, 285, 416, 574
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	6 cut(s)	157, 190, 253, 281, 412, 570
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	23, 462, 927
FokI	GGATG	2 cut(s)	380, 670
Fsp4HI	GCNGC	3 cut(s)	23, 462, 927
FspBI	CTAG	2 cut(s)	539, 995
GlaI	GCGC	1 cut(s)	984
GluI	GCNGC	3 cut(s)	23, 462, 927
GsuI	CTGGAG	2 cut(s)	59, 379
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	2 cut(s)	480, 1018
HgaI	GACGC	1 cut(s)	693
HhaI	GCGC	1 cut(s)	985
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	6 cut(s)	161, 194, 257, 285, 416, 574
Hin6I	GCGC	1 cut(s)	983
HinP1I	GCGC	1 cut(s)	983
HincII	GTYRAC	2 cut(s)	277, 322
HindII	GTYRAC	2 cut(s)	277, 322
HinfI	GANTC	3 cut(s)	164, 813, 964
HpaII	CCGG	2 cut(s)	480, 1018
HphI	GGTGA	4 cut(s)	724, 746, 761, 932
Hpy166II	GTNNAC	3 cut(s)	277, 322, 343
Hpy188I	TCNGA	2 cut(s)	688, 963
Hpy188III	TCNNGA	4 cut(s)	38, 147, 430, 988
Hpy8I	GTNNAC	3 cut(s)	277, 322, 343
HpyCH4III	ACNGT	2 cut(s)	490, 613
HpyCH4V	TGCA	4 cut(s)	25, 356, 842, 974
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 83, 362, 461, 980, 991
HpyF3I	CTNAG	2 cut(s)	650, 930
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	6 cut(s)	161, 194, 257, 285, 416, 574
HspAI	GCGC	1 cut(s)	983
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	30, 195, 751, 763, 1026
LmnI	GCTCC	2 cut(s)	502, 1046
Lsp1109I	GCAGC	2 cut(s)	9, 473
LweI	GCATC	2 cut(s)	352, 752
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	2 cut(s)	539, 995
MaeIII	GTNAC	5 cut(s)	398, 566, 607, 705, 880
MalI	GATC	5 cut(s)	32, 197, 753, 765, 1028
MboI	GATC	5 cut(s)	30, 195, 751, 763, 1026
MboII	GAAGA	2 cut(s)	796, 1012
MflI	RGATCY	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	238, 711
MnlI	CCTC	6 cut(s)	208, 301, 380, 634, 852, 984
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	2 cut(s)	602, 849
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	2 cut(s)	480, 1018
MspR9I	CCNGG	2 cut(s)	186, 528
MvaI	CCWGG	2 cut(s)	186, 528
MwoI	GCNNNNNNNGC	6 cut(s)	74, 83, 362, 461, 980, 991
NdeII	GATC	5 cut(s)	30, 195, 751, 763, 1026
NlaIII	CATG	6 cut(s)	161, 194, 257, 285, 416, 574
NlaIV	GGNNCC	2 cut(s)	32, 183
NmeAIII	GCCGAG	1 cut(s)	311
NmuCI	GTSAC	3 cut(s)	398, 566, 705
NspV	TTCGAA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	986
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	3 cut(s)	164, 813, 964
PinAI	ACCGGT	1 cut(s)	1017
PkrI	GCNGC	3 cut(s)	24, 463, 928
Psp6I	CCWGG	2 cut(s)	184, 526
PspGI	CCWGG	2 cut(s)	184, 526
PspN4I	GGNNCC	2 cut(s)	32, 183
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	373, 1016
RsaNI	GTAC	2 cut(s)	372, 1015
RseI	CAYNNNNRTG	1 cut(s)	575
SalI	GTCGAC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	602, 849
SatI	GCNGC	3 cut(s)	23, 462, 927
Sau3AI	GATC	5 cut(s)	30, 195, 751, 763, 1026
ScrFI	CCNGG	2 cut(s)	186, 528
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	352, 752
Sfr274I	CTCGAG	1 cut(s)	986
SfuI	TTCGAA	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	986
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
SsiI	CCGC	6 cut(s)	66, 117, 365, 558, 792, 926
SspMI	CTAG	2 cut(s)	539, 995
StyD4I	CCNGG	2 cut(s)	184, 526
StyI	CCWWGG	2 cut(s)	450, 804
TaaI	ACNGT	2 cut(s)	490, 613
TaqI	TCGA	4 cut(s)	167, 321, 987, 1029
TauI	GCSGC	1 cut(s)	929
TfiI	GAWTC	3 cut(s)	164, 813, 964
Tru1I	TTAA	2 cut(s)	602, 849
Tru9I	TTAA	2 cut(s)	602, 849
TscAI	CASTG	5 cut(s)	119, 582, 714, 826, 883
TseFI	GTSAC	3 cut(s)	398, 566, 705
TseI	GCWGC	2 cut(s)	22, 461
Tsp45I	GTSAC	3 cut(s)	398, 566, 705
TspDTI	ATGAA	4 cut(s)	429, 518, 533, 672
TspRI	CASTG	5 cut(s)	119, 582, 714, 826, 883
XapI	RAATTY	4 cut(s)	58, 671, 830, 936
XhoI	CTCGAG	1 cut(s)	986
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	2 cut(s)	539, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.