AT2G19640

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002127
Physical Location & Seq
Forward (+)
8491192 .. 8492920
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19640.1

Sequence Viewer

Length: 1026 bp
ATGATAAATGACGGCGGAGCTAAACCGGAGACGCTGCTTAGGGTTGCAGAAATCGGTGGAAGAGGAAGGAGTTTGGTGGCGGCACAGTCTCTTCGTGCTGGACAAGTTATCCTCAGAGAGTCTCCTCTCCTTCTCTACTCTGCTTTTCCATTTCTCTCCTCCTCTGTTTCTCCTTACTGCGACCATTGTTTCCGTTTGTTAGCTTCATCGGCGCATCAGAAATGTCAATCTTGCTCTCTCGTCTCCTTTTGTAGCCCTAATTGCTTCGCCTCTCATACTCCTTGGCTCTGCGAATCTCTTCGCCGGCTTCACCAATCATCCTCCTCTGCATTCTCCGATCAACCTTCTGATCGTCAAGTCCAAGCTCGTTTCCTCCTCTCTGCTTACAATCTCGCCGCTGCTTCTCCTTCTGATTTCCAGATTTTGCTCTCTCTCCAAGGTAGTGGCAGCAGCAATGGAGATCCTTCTTGTTCTGCGGGTGATTCTGCAGCTGCTGGGTTTCTTCATTCTCTTTTATCTTCCGTGTGTCCATCTCTTCCGGTGTCTATCTCGCCGGATCTCACGGCGGCTTTACTGTCAAAGGATAAAGTTAACGCCTTTGGTCTGATGGAACCGTGCTCTGTTTCGAATGAGAAAAGATCTGTGCGAGCTTATGGGATTTATCCAAAGACTTCGTTTTTCAATCATGATTGTCTTCCTAATGCTTGTAGATTCGATTATGTTGACTCTGCTTCTGATGGTAATACTGATATCATCATTAGGATGATTCATGATGTTCCTGAAGGTAGAGAAGTTTGTTTAAGCTACTTCCCTGTGAACATGAACTATTCGAGTAGACAAAAGAGATTGCTTGAGGATTACGGTTTTAAGTGTGACTGTGATCGGTGCAAAGTGGAATTTAGTTGGTCTGAAGGTGAGGAAGATGAGAATGAGATTATGGAAGAGATGGAGGATCAAGATGAACAAGAAGAGATGGAAGATTCAGTAGATATATGTGTGAGAAGGAGAATTGTTTTGGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

341

Amino Acids

37.53

Weight (kDa)

4.91

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 22 - 269 4.5e-09 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 835
AciI CCGC 5 cut(s) 15, 80, 396, 476, 566
AclWI GGATC 3 cut(s) 455, 564, 960
AcsI RAATTY 1 cut(s) 896
AcuI CTGAAG 2 cut(s) 801, 930
AgsI TTSAA 1 cut(s) 682
AluBI AGCT 6 cut(s) 20, 203, 365, 491, 650, 804
AluI AGCT 6 cut(s) 20, 203, 365, 491, 650, 804
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 4 cut(s) 23, 93, 126, 247
AlwI GGATC 3 cut(s) 455, 564, 960
AlwNI CAGNNNCTG 1 cut(s) 494
ApeKI GCWGC 6 cut(s) 34, 398, 447, 450, 488, 491
ApoI RAATTY 1 cut(s) 896
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 302, 491, 926
AsuII TTCGAA 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 6 cut(s) 21, 385, 459, 462, 478, 500
BccI CCATC 5 cut(s) 538, 601, 731, 940, 967
BceAI ACGGC 2 cut(s) 28, 579
BcoDI GTCTC 4 cut(s) 23, 93, 126, 247
BfaI CTAG 1 cut(s) 1024
BfmI CTRYAG 1 cut(s) 486
BglII AGATCT 1 cut(s) 638
BisI GCNGC 9 cut(s) 35, 81, 396, 399, 448, 451, 489, 492, 567
BlsI GCNGC 9 cut(s) 36, 82, 397, 400, 449, 452, 490, 493, 568
BmiI GGNNCC 1 cut(s) 612
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 686
Bpu10I CCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 872
BsaJI CCNNGG 2 cut(s) 281, 436
BsaWI WCCGGW 2 cut(s) 25, 538
Bse118I RCCGGY 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 460
BseDI CCNNGG 2 cut(s) 281, 436
BseGI GGATG 2 cut(s) 317, 768
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 127
BseRI GAGGAG 5 cut(s) 114, 148, 151, 313, 365
BseXI GCAGC 6 cut(s) 21, 385, 459, 462, 478, 500
BseYI CCCAGC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 4 cut(s) 26, 304, 539, 554
BsmAI GTCTC 4 cut(s) 23, 93, 126, 247
BsmBI CGTCTC 2 cut(s) 23, 247
BsmI GAATGC 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
BspACI CCGC 5 cut(s) 15, 80, 396, 476, 566
BspCNI CTCAG 1 cut(s) 126
BspHI TCATGA 2 cut(s) 685, 769
BspLI GGNNCC 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 3 cut(s) 455, 564, 960
BspT104I TTCGAA 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 2 cut(s) 281, 436
BssMI GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
BssT1I CCWWGG 2 cut(s) 281, 436
Bst4CI ACNGT 5 cut(s) 87, 576, 615, 863, 878
Bst6I CTCTTC 6 cut(s) 55, 96, 303, 540, 936, 963
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 305, 648
BstDEI CTNAG 2 cut(s) 38, 113
BstF5I GGATG 2 cut(s) 317, 768
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 7 cut(s) 340, 352, 463, 559, 641, 883, 955
BstMAI GTCTC 4 cut(s) 23, 93, 126, 247
BstMBI GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
BstMWI GCNNNNNNNGC 2 cut(s) 209, 261
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 6 cut(s) 21, 385, 459, 462, 478, 500
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 3 cut(s) 460, 556, 638
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 3 cut(s) 460, 556, 638
BtsCI GGATG 2 cut(s) 317, 768
Cac8I GCNNGC 2 cut(s) 305, 648
CaiI CAGNNNCTG 1 cut(s) 494
CciI TCATGA 2 cut(s) 685, 769
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 303
CseI GACGC 1 cut(s) 40
CviAII CATG 3 cut(s) 686, 770, 820
DdeI CTNAG 2 cut(s) 38, 113
DpnI GATC 7 cut(s) 339, 351, 462, 558, 640, 882, 954
DpnII GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
Eam1104I CTCTTC 6 cut(s) 55, 96, 303, 540, 936, 963
EarI CTCTTC 6 cut(s) 55, 96, 303, 540, 936, 963
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 281, 436
Eco32I GATATC 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 801, 930
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 2 cut(s) 281, 436
ErhI CCWWGG 2 cut(s) 281, 436
Esp3I CGTCTC 2 cut(s) 23, 247
FaeI CATG 3 cut(s) 689, 773, 823
FaiI YATR 9 cut(s) 276, 654, 687, 720, 771, 821, 938, 992, 994
FatI CATG 3 cut(s) 685, 769, 819
FauI CCCGC 1 cut(s) 469
FblI GTMKAC 1 cut(s) 835
Fnu4HI GCNGC 9 cut(s) 35, 81, 396, 399, 448, 451, 489, 492, 567
FokI GGATG 2 cut(s) 304, 775
Fsp4HI GCNGC 9 cut(s) 35, 81, 396, 399, 448, 451, 489, 492, 567
FspBI CTAG 1 cut(s) 1024
GlaI GCGC 1 cut(s) 213
GluI GCNGC 9 cut(s) 35, 81, 396, 399, 448, 451, 489, 492, 567
GsaI CCCAGC 1 cut(s) 498
HapII CCGG 4 cut(s) 26, 304, 539, 554
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 689, 773, 823
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 2 cut(s) 592, 724
HindII GTYRAC 2 cut(s) 592, 724
HinfI GANTC 7 cut(s) 119, 293, 482, 711, 725, 766, 980
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 4 cut(s) 26, 304, 539, 554
HphI GGTGA 3 cut(s) 302, 491, 926
Hpy166II GTNNAC 4 cut(s) 592, 724, 817, 836
Hpy188I TCNGA 8 cut(s) 116, 219, 337, 349, 412, 606, 736, 910
Hpy188III TCNNGA 5 cut(s) 418, 686, 770, 779, 956
Hpy8I GTNNAC 4 cut(s) 592, 724, 817, 836
HpyAV CCTTC 8 cut(s) 60, 140, 354, 417, 474, 776, 905, 996
HpyCH4III ACNGT 5 cut(s) 87, 576, 615, 863, 878
HpyCH4V TGCA 4 cut(s) 47, 329, 488, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 261
HpyF3I CTNAG 2 cut(s) 38, 113
Hsp92II CATG 3 cut(s) 689, 773, 823
HspAI GCGC 1 cut(s) 212
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 9 cut(s) 39, 84, 317, 431, 480, 552, 567, 792, 825
Lsp1109I GCAGC 6 cut(s) 21, 385, 459, 462, 478, 500
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 1024
MaeIII GTNAC 1 cut(s) 872
MalI GATC 7 cut(s) 339, 351, 462, 558, 640, 882, 954
MboI GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
MflI RGATCY 3 cut(s) 460, 556, 638
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 3 cut(s) 259, 896, 1008
MlyI GAGTC 2 cut(s) 128, 719
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 3 cut(s) 591, 800, 867
MslI CAYNNNNRTG 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 398, 491
MspI CCGG 4 cut(s) 26, 304, 539, 554
Mva1269I GAATGC 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 209, 261
NaeI GCCGGC 1 cut(s) 305
NdeII GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 3 cut(s) 689, 773, 823
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 1 cut(s) 872
NspV TTCGAA 1 cut(s) 626
PagI TCATGA 2 cut(s) 685, 769
PctI GAATGC 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 5 cut(s) 293, 482, 711, 766, 980
PkrI GCNGC 9 cut(s) 36, 82, 397, 400, 449, 452, 490, 493, 568
PleI GAGTC 2 cut(s) 127, 719
PpsI GAGTC 2 cut(s) 127, 719
PspFI CCCAGC 1 cut(s) 494
PspN4I GGNNCC 1 cut(s) 612
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 3 cut(s) 460, 556, 638
PvuII CAGCTG 1 cut(s) 491
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 3 cut(s) 591, 800, 867
SatI GCNGC 9 cut(s) 35, 81, 396, 399, 448, 451, 489, 492, 567
Sau3AI GATC 7 cut(s) 337, 349, 460, 556, 638, 880, 952
SchI GAGTC 2 cut(s) 128, 719
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 3 cut(s) 259, 896, 1008
SsiI CCGC 5 cut(s) 15, 80, 396, 476, 566
SspMI CTAG 1 cut(s) 1024
StyI CCWWGG 2 cut(s) 281, 436
TaaI ACNGT 5 cut(s) 87, 576, 615, 863, 878
TaqI TCGA 3 cut(s) 626, 714, 830
TasI AATT 3 cut(s) 259, 896, 1008
TauI GCSGC 3 cut(s) 83, 398, 569
TfiI GAWTC 5 cut(s) 293, 482, 711, 766, 980
Tru1I TTAA 3 cut(s) 591, 800, 867
Tru9I TTAA 3 cut(s) 591, 800, 867
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 6 cut(s) 34, 398, 447, 450, 488, 491
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 5 cut(s) 195, 494, 758, 836, 975
TspGWI ACGGA 2 cut(s) 182, 511
XapI RAATTY 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 835
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.