Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000066.1

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Forward (+)

140076 .. 140636

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000066.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgctctctctctgtaggataaattggattgatggagccccttcggaatttggtctgagatcgagcagagcctatggaatttatcgcaaggcctcgtttttcaaccatgattgtctcccccatgcgtgccgatttgattatgttgatgaaggcagcatagagattattccggcagaggactatgggtttgtatgtcaatgtgatcggtgcaaggttgaggcaaattggtctgacaatgaggaggagcaaggtggttcggctgagattatggatgaggaccaagaccaggaaatggaaggagaatcggaatcagaagctgggagtgacatagaagtagaagatcaaggagaagccgattttccacctgcctatttctttgtgagatttatgtgtagtagaaccaattgctggggcacgctagtccgtttgcccctgaaagatgatggaactcggaactccttcggatgccatggaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

159

Amino Acids

18.0

Weight (kDa)

4.25

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	373
AccB7I	CCANNNNNTGG	2 cut(s)	292, 408
AcsI	RAATTY	2 cut(s)	47, 78
AfiI	CCNNNNNNNGG	3 cut(s)	286, 292, 408
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	47, 78
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	26, 437
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	154
BlsI	GCNGC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 292, 408
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	2 cut(s)	277, 470
BseLI	CCNNNNNNNGG	3 cut(s)	286, 292, 408
BseMII	CTCAG	2 cut(s)	47, 252
BseRI	GAGGAG	2 cut(s)	254, 257
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	2 cut(s)	317, 408
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	286, 292, 408
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	40, 416
Bsp143I	GATC	3 cut(s)	59, 202, 340
Bsp19I	CCATGG	1 cut(s)	469
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	48, 253
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	3 cut(s)	59, 202, 340
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	127, 416
BstDEI	CTNAG	2 cut(s)	56, 261
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	277, 470
BstKTI	GATC	3 cut(s)	62, 205, 343
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	3 cut(s)	59, 202, 340
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	277, 470
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	127, 416
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	3 cut(s)	107, 122, 470
CviJI	RGCY	6 cut(s)	38, 71, 92, 260, 317, 353
CviKI_1	RGCY	6 cut(s)	38, 71, 92, 260, 317, 353
DdeI	CTNAG	2 cut(s)	56, 261
DpnI	GATC	3 cut(s)	61, 204, 342
DpnII	GATC	3 cut(s)	59, 202, 340
Eco130I	CCWWGG	1 cut(s)	469
Eco147I	AGGCCT	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	3 cut(s)	110, 125, 473
FatI	CATG	3 cut(s)	106, 121, 469
Fnu4HI	GCNGC	1 cut(s)	154
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	1 cut(s)	154
GsaI	CCCAGC	2 cut(s)	321, 412
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	3 cut(s)	110, 125, 473
HinfI	GANTC	2 cut(s)	302, 308
HpaII	CCGG	1 cut(s)	170
Hpy188I	TCNGA	7 cut(s)	46, 57, 232, 307, 313, 453, 464
HpyAV	CCTTC	4 cut(s)	51, 143, 290, 469
HpyCH4V	TGCA	1 cut(s)	210
HpyF3I	CTNAG	2 cut(s)	56, 261
Hsp92II	CATG	3 cut(s)	110, 125, 473
Kzo9I	GATC	3 cut(s)	59, 202, 340
LmnI	GCTCC	2 cut(s)	35, 244
LpnPI	CCDG	7 cut(s)	183, 272, 299, 303, 378, 394, 446
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	3 cut(s)	61, 204, 342
MboI	GATC	3 cut(s)	59, 202, 340
MboII	GAAGA	1 cut(s)	350
MfeI	CAATTG	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	40, 416
MluCI	AATT	5 cut(s)	22, 47, 78, 223, 403
MnlI	CCTC	6 cut(s)	103, 169, 211, 232, 235, 268
MroXI	GAANNNNTTC	1 cut(s)	458
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	59, 202, 340
NlaIII	CATG	3 cut(s)	110, 125, 473
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	323
PaqCI	CACCTGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	302, 308
PflMI	CCANNNNNTGG	2 cut(s)	292, 408
PkrI	GCNGC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	2 cut(s)	317, 408
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	317
SatI	GCNGC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	59, 202, 340
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	40, 416
SetI	ASST	4 cut(s)	216, 253, 319, 367
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	5 cut(s)	22, 47, 78, 223, 403
SseBI	AGGCCT	1 cut(s)	92
SspMI	CTAG	1 cut(s)	419
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	469
TaqI	TCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	22, 47, 78, 223, 403
TfiI	GAWTC	2 cut(s)	302, 308
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	413
Van91I	CCANNNNNTGG	2 cut(s)	292, 408
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	47, 78
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.