Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Forward (+)

38419046 .. 38419598

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGCTAGCAATGTGTTGAGAGTGATATCAGTTAGCATGCTTGTGCTTACCGTAGCAGCATTAGATTCTCAAAAGACCGGTCTTAATATTTTTGTTAACGATGTCCCGATTCCAGCTGAGGCGCCTCTTAATTATTTTCCCGATACCAAAACTAGTACATGCGCCAAAAAGTGCGGCCTTTCCTGCGTTCTGACATTAGAAGATCCTGTGAACTATCCTGCATGTTTTGGACTTTGCATGCTCGCCTGCAAGATTAAGTTCAATGACGCTGCTTATGCTTGTACGCACCGTTGTGCCGCCTCTATCAAATTCACGGCCACCATGATATCATCAGTTTCCGATACTCAGAAGTATGTGAGTGGCTATGTGGATGCTTGTTATCAGAGTTGCTCTAAGGATCATAGATTTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

6.68

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	2 cut(s)	177, 300
AclWI	GGATC	2 cut(s)	200, 408
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	2 cut(s)	160, 286
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	265
AhlI	ACTAGT	1 cut(s)	155
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	2 cut(s)	200, 408
AoxI	GGCC	2 cut(s)	178, 318
ApeKI	GCWGC	2 cut(s)	59, 272
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AsiGI	ACCGGT	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	127, 167
AsuNHI	GCTAGC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	71, 259
BceAI	ACGGC	1 cut(s)	333
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	2 cut(s)	9, 156
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	4 cut(s)	60, 178, 273, 300
BlsI	GCNGC	4 cut(s)	61, 179, 274, 301
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	111, 362
BseXI	GCAGC	2 cut(s)	71, 259
BshFI	GGCC	2 cut(s)	180, 320
BshNI	GGYRCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	180, 320
Bsp143I	GATC	2 cut(s)	205, 400
BspACI	CCGC	2 cut(s)	177, 300
BspANI	GGCC	2 cut(s)	180, 320
BspCNI	CTCAG	2 cut(s)	112, 361
BspLI	GGNNCC	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	200, 408
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	2 cut(s)	205, 400
BssNI	GRCGYC	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	55, 293
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	5 cut(s)	10, 41, 242, 246, 250
BstDEI	CTNAG	3 cut(s)	120, 348, 396
BstF5I	GGATG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 167
BstKTI	GATC	2 cut(s)	208, 403
BstMBI	GATC	2 cut(s)	205, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 278
BstNSI	RCATGY	4 cut(s)	43, 165, 228, 244
BstV1I	GCAGC	2 cut(s)	71, 259
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	180, 320
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	5 cut(s)	10, 41, 242, 246, 250
CfoI	GCGC	2 cut(s)	127, 167
Cfr10I	RCCGGY	1 cut(s)	80
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	159, 285
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	5 cut(s)	40, 162, 225, 241, 325
CviJI	RGCY	5 cut(s)	8, 119, 180, 320, 366
CviKI_1	RGCY	5 cut(s)	8, 119, 180, 320, 366
CviQI	GTAC	2 cut(s)	159, 285
DdeI	CTNAG	3 cut(s)	120, 348, 396
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	2 cut(s)	207, 402
DpnII	GATC	2 cut(s)	205, 400
EaeI	YGGCCR	1 cut(s)	318
Eco32I	GATATC	2 cut(s)	30, 330
EcoRV	GATATC	2 cut(s)	30, 330
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
FaeI	CATG	5 cut(s)	43, 165, 228, 244, 328
FaiI	YATR	9 cut(s)	41, 163, 226, 242, 279, 326, 357, 369, 405
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	5 cut(s)	39, 161, 224, 240, 324
Fnu4HI	GCNGC	4 cut(s)	60, 178, 273, 300
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	60, 178, 273, 300
FspBI	CTAG	2 cut(s)	9, 156
GlaI	GCGC	2 cut(s)	126, 166
GluI	GCNGC	4 cut(s)	60, 178, 273, 300
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	180, 320
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	127, 167
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	43, 165, 228, 244, 328
Hin6I	GCGC	2 cut(s)	125, 165
HinP1I	GCGC	2 cut(s)	125, 165
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	68, 112
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	81
Hpy166II	GTNNAC	2 cut(s)	100, 214
Hpy188I	TCNGA	4 cut(s)	195, 343, 351, 387
Hpy188III	TCNNGA	2 cut(s)	109, 143
Hpy8I	GTNNAC	2 cut(s)	100, 214
HpyCH4III	ACNGT	2 cut(s)	55, 293
HpyCH4V	TGCA	3 cut(s)	224, 240, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 278
HpyF3I	CTNAG	3 cut(s)	120, 348, 396
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	43, 165, 228, 244, 328
HspAI	GCGC	2 cut(s)	125, 165
KasI	GGCGCC	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	205, 400
LpnPI	CCDG	6 cut(s)	94, 129, 199, 222, 234, 262
Lsp1109I	GCAGC	2 cut(s)	71, 259
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	9, 156
MalI	GATC	2 cut(s)	207, 402
MboI	GATC	2 cut(s)	205, 400
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	133, 311
Mly113I	GGCGCC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	115, 138, 313
MseI	TTAA	5 cut(s)	87, 99, 132, 258, 418
MslI	CAYNNNNRTG	2 cut(s)	44, 294
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	186, 278
NarI	GGCGCC	1 cut(s)	125
NdeII	GATC	2 cut(s)	205, 400
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	5 cut(s)	43, 165, 228, 244, 328
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	4 cut(s)	43, 165, 228, 244
OliI	CACNNNNGTG	1 cut(s)	294
PaeI	GCATGC	2 cut(s)	43, 244
PfeI	GAWTC	2 cut(s)	68, 112
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	61, 179, 274, 301
PluTI	GGCGCC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	160, 286
RsaNI	GTAC	2 cut(s)	159, 285
RseI	CAYNNNNRTG	2 cut(s)	44, 294
SaqAI	TTAA	5 cut(s)	87, 99, 132, 258, 418
SatI	GCNGC	4 cut(s)	60, 178, 273, 300
Sau3AI	GATC	2 cut(s)	205, 400
SetI	ASST	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	364
SfoI	GGCGCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	44, 294
SpeI	ACTAGT	1 cut(s)	155
SphI	GCATGC	2 cut(s)	43, 244
Sse9I	AATT	2 cut(s)	133, 311
SsiI	CCGC	2 cut(s)	177, 300
SspDI	GGCGCC	1 cut(s)	124
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	9, 156
TaaI	ACNGT	2 cut(s)	55, 293
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	133, 311
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	2 cut(s)	180, 302
TfiI	GAWTC	2 cut(s)	68, 112
Tru1I	TTAA	5 cut(s)	87, 99, 132, 258, 418
Tru9I	TTAA	5 cut(s)	87, 99, 132, 258, 418
TseI	GCWGC	2 cut(s)	59, 272
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	4 cut(s)	43, 165, 228, 244
XspI	CTAG	2 cut(s)	9, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.