Rh4BG282500

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002127
Physical Location & Seq
Reverse (-)
45708272 .. 45710033
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG282500.1

Sequence Viewer

Length: 642 bp
ATGCTCTCTCTCTGTAGGATAAATTGGATTGATGGAGCCCCTTCGGAATTTGGTCTGAGATCGAGCAGAGCCTATGGAATTTTTCCCAAGGCCTCGTTTTTCAACCATGATTGTCTCCCCAGTGCGTGCCGATTTGATTATGTTGATGAAGGCAGCACCGAGATTATTGTGAGGATGATTCACGATGTTCCGGAGGGGAGGGAGATTTGCCTGAGCTACTTTCCTGTTAACCCGGCTTATTCGAGCCGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTATGTCAACGTGATCGATGCAAGGTTGAGGCGAATTGGTCCGACAATGAGGAGGTTGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATAGAACTAGAAGATCAAGGAGAAGCCGATTTTCCACATGCCTACTTCTTTGTGAGATTTATGTGTAGTAGAACCAATTGCTGGGGCACGCTAGCCTCTTTGCCCCTGAAAGATGATGGAACTCCTTCGGATGCTATGGAATGCAATGTGTTTGGAAGCCTTAAGAAAGATGAGGACATTAGTGGTCACGGACAAAATGGGCTCTCTTTGGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

213

Amino Acids

23.87

Weight (kDa)

4.23

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 29 - 73 7.3e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 388, 504
AccIII TCCGGA 1 cut(s) 190
AcsI RAATTY 2 cut(s) 47, 78
AfiI CCNNNNNNNGG 3 cut(s) 382, 388, 504
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 2 cut(s) 216, 413
AluI AGCT 2 cut(s) 216, 413
Alw26I GTCTC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 413
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 47, 78
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 318, 373
AsuC2I CCSGG 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 514
AvaII GGWCC 2 cut(s) 318, 373
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 40, 627
BbvCI CCTCAGC 2 cut(s) 264, 357
BbvI GCAGC 1 cut(s) 165
BccI CCATC 2 cut(s) 26, 533
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 431, 515
BfmI CTRYAG 1 cut(s) 13
BfrI CTTAAG 1 cut(s) 584
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 233, 383
Bme18I GGWCC 2 cut(s) 318, 373
BmgT120I GGNCC 2 cut(s) 318, 373
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 233, 383
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 287, 544
BmtI GCTAGC 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 114
Bpu10I CCTNAGC 3 cut(s) 212, 264, 357
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 388, 504
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 574
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 180, 373, 559
BseLI CCNNNNNNNGG 3 cut(s) 382, 388, 504
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 4 cut(s) 47, 203, 255, 348
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 344, 353
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 165
BseYI CCCAGC 2 cut(s) 413, 504
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 295
BsiSI CCGG 3 cut(s) 191, 233, 247
BslI CCNNNNNNNGG 3 cut(s) 382, 388, 504
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 3 cut(s) 40, 512, 627
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 59, 292, 436
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 4 cut(s) 48, 204, 256, 349
BspDI ATCGAT 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 518
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 59, 292, 436
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 383
BstAFI CTTAAG 1 cut(s) 584
BstC8I GCNNGC 4 cut(s) 127, 248, 512, 516
BstDEI CTNAG 4 cut(s) 56, 212, 264, 357
BstF5I GGATG 3 cut(s) 180, 373, 559
BstKTI GATC 3 cut(s) 62, 295, 439
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 59, 292, 436
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 231, 381
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 295
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 295
BtsCI GGATG 3 cut(s) 180, 373, 559
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 4 cut(s) 127, 248, 512, 516
CaiI CAGNNNCTG 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 318, 373
ClaI ATCGAT 1 cut(s) 295
CviAII CATG 2 cut(s) 107, 461
DdeI CTNAG 4 cut(s) 56, 212, 264, 357
DpnI GATC 3 cut(s) 61, 294, 438
DpnII GATC 3 cut(s) 59, 292, 436
Eco130I CCWWGG 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 40, 627
Eco47I GGWCC 2 cut(s) 318, 373
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 40, 627
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 110, 464
FatI CATG 2 cut(s) 106, 460
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 3 cut(s) 187, 380, 566
FriOI GRGCYC 2 cut(s) 40, 627
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 2 cut(s) 431, 515
GluI GCNGC 1 cut(s) 154
GsaI CCCAGC 2 cut(s) 417, 508
HaeIII GGCC 1 cut(s) 92
HapII CCGG 3 cut(s) 191, 233, 247
Hin1II CATG 2 cut(s) 110, 464
HincII GTYRAC 2 cut(s) 229, 287
HindII GTYRAC 2 cut(s) 229, 287
HinfI GANTC 4 cut(s) 178, 256, 398, 404
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 191, 233, 247
Hpy166II GTNNAC 2 cut(s) 229, 287
Hpy188I TCNGA 6 cut(s) 46, 57, 322, 403, 409, 553
Hpy188III TCNNGA 2 cut(s) 182, 191
Hpy8I GTNNAC 2 cut(s) 229, 287
HpyAV CCTTC 5 cut(s) 51, 143, 338, 386, 558
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 300, 567
HpyF3I CTNAG 4 cut(s) 56, 212, 264, 357
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 110, 464
Kpn2I TCCGGA 1 cut(s) 190
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 59, 292, 436
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 2 cut(s) 287, 544
MaeI CTAG 2 cut(s) 431, 515
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 419, 608
MalI GATC 3 cut(s) 61, 294, 438
MboI GATC 3 cut(s) 59, 292, 436
MboII GAAGA 1 cut(s) 446
MfeI CAATTG 1 cut(s) 499
MhlI GDGCHC 3 cut(s) 40, 512, 627
MluCI AATT 5 cut(s) 22, 47, 78, 313, 499
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 345
MroI TCCGGA 1 cut(s) 190
MroNI GCCGGC 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 547
MseI TTAA 2 cut(s) 228, 585
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 3 cut(s) 191, 233, 247
MspR9I CCNGG 2 cut(s) 233, 383
MunI CAATTG 1 cut(s) 499
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 383
NaeI GCCGGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 59, 292, 436
NgoMIV GCCGGC 1 cut(s) 246
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 2 cut(s) 110, 464
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 419, 608
NspI RCATGY 1 cut(s) 464
PceI AGGCCT 1 cut(s) 92
PctI GAATGC 1 cut(s) 569
PdiI GCCGGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 3 cut(s) 178, 398, 404
PflMI CCANNNNNTGG 2 cut(s) 388, 504
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 2 cut(s) 413, 504
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 318, 373
PstNI CAGNNNCTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 228, 585
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 3 cut(s) 59, 292, 436
Sau96I GGNCC 2 cut(s) 318, 373
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 233, 383
SduI GDGCHC 3 cut(s) 40, 512, 627
SetI ASST 7 cut(s) 218, 292, 306, 336, 349, 363, 415
SfaNI GCATC 2 cut(s) 287, 544
SfcI CTRYAG 1 cut(s) 13
SinI GGWCC 2 cut(s) 318, 373
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 5 cut(s) 22, 47, 78, 313, 499
SseBI AGGCCT 1 cut(s) 92
SspMI CTAG 2 cut(s) 431, 515
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 231, 381
StyI CCWWGG 1 cut(s) 87
TaiI ACGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 62, 242, 295
TasI AATT 5 cut(s) 22, 47, 78, 313, 499
TfiI GAWTC 3 cut(s) 178, 398, 404
Tru1I TTAA 2 cut(s) 228, 585
Tru9I TTAA 2 cut(s) 228, 585
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 419, 608
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 2 cut(s) 419, 608
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 2 cut(s) 388, 504
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 318, 373
XapI RAATTY 2 cut(s) 47, 78
XceI RCATGY 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 2 cut(s) 431, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.