Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00465

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Forward (+)

35409 .. 43588

Gene Structure 8180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCGGCAACCGAGAGATGTCCTAGCGATTACTATGAAGAGTCGCTACAAACTTTTCTGGTAATCGCCAAAAGTGAGGATCCTAAAAGCGATTACGGTGACTTCTTACCGTTTCTAGCTACGCAACGTCAGTATGTGATTCAAATGGAAACAATCGAAACTTTGGAGGATCCACAATTTAGTCGATTGATGGTTGCAGCGGGTCCGATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAAAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCTGAGGATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGATCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGATGACTGTACAAGAATGTATTGCCTGTTTTGATATAGATGTTGAGGAATATGAGTTGATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTTCTTCTTACATAGAAGATCGCCAAAGTCGCAACACCAACACCAACTCCAACTTAACAGCTTCAACCCCTGTTGGCAAGTCTACTGACAGTGGTGCTTTGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.19

Weight (kDa)

4.8

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	5, 200, 277
AclWI	GGATC	5 cut(s)	74, 87, 164, 177, 447
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	1 cut(s)	483
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	143, 313, 627
AhlI	ACTAGT	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	336
AluBI	AGCT	2 cut(s)	119, 623
AluI	AGCT	2 cut(s)	119, 623
AlwI	GGATC	5 cut(s)	74, 87, 164, 177, 447
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	2 cut(s)	197, 413
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	203, 446
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	110, 368
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	2 cut(s)	79, 169
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	209, 400
BccI	CCATC	2 cut(s)	184, 526
BciVI	GTATCC	1 cut(s)	474
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	3 cut(s)	24, 116, 363
BfoI	RGCGCY	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	3 cut(s)	6, 198, 414
BlsI	GCNGC	3 cut(s)	7, 199, 415
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	203, 446
BmiI	GGNNCC	3 cut(s)	81, 171, 204
BmrFI	CCNGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	209, 400
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	252
BsnI	GGCC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	79, 169, 439, 451, 580
BspACI	CCGC	3 cut(s)	5, 200, 277
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	3 cut(s)	81, 171, 204
BspPI	GGATC	5 cut(s)	74, 87, 164, 177, 447
BspQI	GCTCTTC	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	5 cut(s)	79, 169, 439, 451, 580
Bst4CI	ACNGT	4 cut(s)	98, 111, 481, 653
Bst6I	CTCTTC	3 cut(s)	33, 260, 474
BstAUI	TGTACA	1 cut(s)	481
BstC8I	GCNNGC	3 cut(s)	277, 281, 285
BstDEI	CTNAG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	82, 172, 442, 454, 583
BstMBI	GATC	5 cut(s)	79, 169, 439, 451, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 591
BstSCI	CCNGG	1 cut(s)	250
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	209, 400
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	79, 169, 439
BstYI	RGATCY	3 cut(s)	79, 169, 439
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	277, 281, 285
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	203, 446
Csp6I	GTAC	1 cut(s)	482
CviJI	RGCY	5 cut(s)	119, 275, 413, 448, 623
CviKI_1	RGCY	5 cut(s)	119, 275, 413, 448, 623
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	81, 171, 441, 453, 582
DpnII	GATC	5 cut(s)	79, 169, 439, 451, 580
Eam1104I	CTCTTC	3 cut(s)	33, 260, 474
EarI	CTCTTC	3 cut(s)	33, 260, 474
Eco47I	GGWCC	1 cut(s)	203
FaiI	YATR	8 cut(s)	36, 135, 372, 395, 419, 509, 525, 575
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FauI	CCCGC	2 cut(s)	193, 284
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	3 cut(s)	6, 198, 414
Fsp4HI	GCNGC	3 cut(s)	6, 198, 414
FspBI	CTAG	3 cut(s)	24, 116, 363
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	3 cut(s)	6, 198, 414
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	4 cut(s)	41, 139, 374, 380
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	110, 368
Hpy166II	GTNNAC	1 cut(s)	645
Hpy188I	TCNGA	5 cut(s)	207, 346, 379, 400, 474
Hpy188III	TCNNGA	2 cut(s)	437, 455
Hpy8I	GTNNAC	1 cut(s)	645
HpyAV	CCTTC	2 cut(s)	254, 443
HpyCH4III	ACNGT	4 cut(s)	98, 111, 481, 653
HpyCH4IV	ACGT	2 cut(s)	127, 335
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 591
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	127, 335
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	79, 169, 439, 451, 580
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	563
LpnPI	CCDG	8 cut(s)	44, 265, 293, 339, 422, 462, 511, 645
Lsp1109I	GCAGC	2 cut(s)	209, 400
MaeI	CTAG	3 cut(s)	24, 116, 363
MaeII	ACGT	2 cut(s)	127, 335
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	5 cut(s)	81, 171, 441, 453, 582
MboI	GATC	5 cut(s)	79, 169, 439, 451, 580
MboII	GAAGA	6 cut(s)	50, 226, 277, 461, 558, 590
MflI	RGATCY	3 cut(s)	79, 169, 439
MluCI	AATT	3 cut(s)	176, 308, 386
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	9 cut(s)	70, 160, 258, 313, 340, 349, 394, 477, 511
MseI	TTAA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	276, 591
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	5 cut(s)	79, 169, 439, 451, 580
NlaIV	GGNNCC	3 cut(s)	81, 171, 204
NmuCI	GTSAC	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	139, 374, 380
PkrI	GCNGC	3 cut(s)	7, 199, 415
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	81, 171, 204
PspPI	GGNCC	2 cut(s)	203, 446
PsuI	RGATCY	3 cut(s)	79, 169, 439
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	3 cut(s)	6, 198, 414
Sau3AI	GATC	5 cut(s)	79, 169, 439, 451, 580
Sau96I	GGNCC	2 cut(s)	203, 446
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	4 cut(s)	121, 130, 338, 625
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	3 cut(s)	176, 308, 386
SsiI	CCGC	3 cut(s)	5, 200, 277
SspMI	CTAG	3 cut(s)	24, 116, 363
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	98, 111, 481, 653
TaiI	ACGT	2 cut(s)	130, 338
TaqI	TCGA	6 cut(s)	156, 184, 231, 293, 329, 383
TasI	AATT	3 cut(s)	176, 308, 386
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	139, 374, 380
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	1 cut(s)	658
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	197, 413
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	51, 227, 434
TspRI	CASTG	1 cut(s)	658
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	3 cut(s)	24, 116, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.