Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00922

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

18659 .. 22232

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCAAAGAGCAAAGCCCGCCAGCACGCAAAATCGAAGAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGGTGACTGTACAAGAATGTATTGCCTTTTTTGATATAGATGTTGAGGAATATGAGTTTATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTATTTCTTACATAGAAGATCGCCAAAGTCGCAACGCCAACACCAACTCCAACTCCAACTTAACAGACAAATTGCGCCGTACCAACTTCAACTTTCTTCAGCGGATTATTCGCTATGTTGGTGCTGTTTTTCAAAATAGTAGTGGCACTCTTTTGTTTTTACAAGAAAACTGTGAGGTTTTTGATGAGGCCAATTTACTGGATACTGTTGTGGTGGTGATACCGGTTGAGTTCAATTCCGAAGCTTCTAGTTACGCTTCTAACATATTTGGGTCAAGCCCGATTAGCAGGCCCAATGTGCATGGAAGGAGGAAACCCTTCTACGATCGTATCGATTCTATTCAATTAGTTATTCTGTCTCCTCAAGTCCTCATCGCTCCAAGTTTGCTCTCTCAGTGTAGGATAAATTGGATTGGTGGAGCCCCTTCGGAATTTGGTCTGAGATCGAGCAGAGCCTATGGAATTTATCGCAAGGCCTCGTTTTTCAACCATGATTGTCTCCCCCATGCGTGCCGATTTGATTATGCTGATGAAGGCAGCATAGAGATTATTGCTTATTCGAGCCGGCAAAGGACTATGGGTTTGTATGTCAATGTGATCAGTGCAAGGTTGAGGCGAATTGGTCTGACAATGAGGAGGAGCAAGGTGGTTCGGCTGAGATTATGGATGAGGACCAAGAACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATAGAATTCCAAATGCTGGGGCACGCTAGTGCCTTTGCCCCTGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

375

Amino Acids

42.7

Weight (kDa)

8.61

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1042, 1093
AciI	CCGC	2 cut(s)	70, 457
AcsI	RAATTY	4 cut(s)	179, 785, 816, 1082
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	276, 436
AfiI	CCNNNNNNNGG	2 cut(s)	1042, 1093
AflIII	ACRYGT	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	6 cut(s)	106, 445, 488, 589, 698, 841
AhlI	ACTAGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	1035
AleI	CACNNNNGTG	1 cut(s)	1104
AluBI	AGCT	2 cut(s)	599, 1067
AluI	AGCT	2 cut(s)	599, 1067
Alw26I	GTCTC	2 cut(s)	717, 857
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	4 cut(s)	239, 543, 644, 828
ApeKI	GCWGC	2 cut(s)	206, 891
ApoI	RAATTY	4 cut(s)	179, 785, 816, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
AsiGI	ACCGGT	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	225, 432
AspS9I	GGNCC	3 cut(s)	239, 645, 1026
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	161, 280, 583
AvaII	GGWCC	1 cut(s)	1026
BaeGI	GKGCMC	1 cut(s)	1101
BaeI	ACNNNNGTAYC	4 cut(s)	549, 582, 667, 700
BanII	GRGCYC	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	193, 903
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	1037
BciVI	GTATCC	2 cut(s)	267, 550
BclI	TGATCA	2 cut(s)	244, 951
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	717, 857
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	156, 603, 1104
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	2 cut(s)	267, 550
BisI	GCNGC	2 cut(s)	207, 892
BlsI	GCNGC	2 cut(s)	208, 893
Bme1390I	CCNGG	2 cut(s)	45, 1037
Bme18I	GGWCC	1 cut(s)	1026
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	239, 645, 1026
BmiI	GGNNCC	1 cut(s)	775
BmrFI	CCNGG	2 cut(s)	45, 1037
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	702
BpuMI	CCSGG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	2 cut(s)	265, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 392, 416, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	1042, 1093
Bse118I	RCCGGY	2 cut(s)	577, 918
Bse1I	ACTGG	2 cut(s)	151, 558
BseBI	CCWGG	1 cut(s)	1037
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	1026
BseLI	CCNNNNNNNGG	2 cut(s)	1042, 1093
BseMII	CTCAG	3 cut(s)	761, 785, 1001
BseNI	ACTGG	2 cut(s)	151, 558
BseRI	GAGGAG	4 cut(s)	128, 705, 1003, 1006
BseSI	GKGCMC	1 cut(s)	1101
BseXI	GCAGC	2 cut(s)	193, 903
BseYI	CCCAGC	2 cut(s)	1067, 1093
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	4 cut(s)	241, 545, 646, 830
BshTI	ACCGGT	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	687
BsiEI	CGRYCG	1 cut(s)	682
BsiSI	CCGG	4 cut(s)	45, 266, 578, 919
BslI	CCNNNNNNNGG	2 cut(s)	1042, 1093
BsmAI	GTCTC	2 cut(s)	717, 857
BsnI	GGCC	4 cut(s)	241, 545, 646, 830
Bsp1286I	GDGCHC	2 cut(s)	778, 1101
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	244, 373, 679, 797, 951
BspACI	CCGC	2 cut(s)	70, 457
BspANI	GGCC	4 cut(s)	241, 545, 646, 830
BspCNI	CTCAG	3 cut(s)	760, 786, 1002
BspDI	ATCGAT	1 cut(s)	687
BspLI	GGNNCC	1 cut(s)	775
BsrFI	RCCGGY	2 cut(s)	577, 918
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	151, 558
BssAI	RCCGGY	2 cut(s)	577, 918
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	5 cut(s)	244, 373, 679, 797, 951
Bst2UI	CCWGG	1 cut(s)	1037
Bst4CI	ACNGT	3 cut(s)	274, 527, 562
Bst6I	CTCTTC	2 cut(s)	83, 267
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	7 cut(s)	70, 74, 78, 644, 865, 920, 1101
BstDEI	CTNAG	3 cut(s)	747, 794, 1010
BstF5I	GGATG	1 cut(s)	1026
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 432
BstKTI	GATC	5 cut(s)	247, 376, 682, 800, 954
BstMAI	GTCTC	2 cut(s)	717, 857
BstMBI	GATC	5 cut(s)	244, 373, 679, 797, 951
BstMCI	CGRYCG	1 cut(s)	682
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 384, 639, 652
BstNI	CCWGG	1 cut(s)	1037
BstSCI	CCNGG	2 cut(s)	43, 1035
BstSLI	GKGCMC	1 cut(s)	1101
BstV1I	GCAGC	2 cut(s)	193, 903
BstV2I	GAAGAC	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	553
Bsu15I	ATCGAT	1 cut(s)	687
BsuI	GTATCC	2 cut(s)	267, 550
BsuRI	GGCC	4 cut(s)	241, 545, 646, 830
BsuTUI	ATCGAT	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	712
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	1026
BtsIMutI	CAGTG	2 cut(s)	755, 961
Cac8I	GCNNGC	7 cut(s)	70, 74, 78, 644, 865, 920, 1101
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	2 cut(s)	225, 432
Cfr10I	RCCGGY	2 cut(s)	577, 918
Cfr13I	GGNCC	3 cut(s)	239, 645, 1026
ClaI	ATCGAT	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	275, 435
CspAI	ACCGGT	1 cut(s)	577
CviAII	CATG	3 cut(s)	656, 845, 860
CviQI	GTAC	2 cut(s)	275, 435
DdeI	CTNAG	3 cut(s)	747, 794, 1010
DpnI	GATC	5 cut(s)	246, 375, 681, 799, 953
DpnII	GATC	5 cut(s)	244, 373, 679, 797, 951
Eam1104I	CTCTTC	2 cut(s)	83, 267
EarI	CTCTTC	2 cut(s)	83, 267
Eco147I	AGGCCT	1 cut(s)	830
Eco24I	GRGCYC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	1026
Eco57I	CTGAAG	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	1082
EcoRII	CCWGG	1 cut(s)	1035
EcoT38I	GRGCYC	1 cut(s)	778
FaeI	CATG	3 cut(s)	659, 848, 863
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	655, 844, 859
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	2 cut(s)	244, 951
Fnu4HI	GCNGC	2 cut(s)	207, 892
FokI	GGATG	1 cut(s)	1033
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	2 cut(s)	207, 892
FspBI	CTAG	3 cut(s)	156, 603, 1104
GlaI	GCGC	2 cut(s)	224, 431
GluI	GCNGC	2 cut(s)	207, 892
GsaI	CCCAGC	2 cut(s)	1071, 1097
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	241, 545, 646, 830
HapII	CCGG	4 cut(s)	45, 266, 578, 919
HhaI	GCGC	2 cut(s)	225, 432
Hin1II	CATG	3 cut(s)	659, 848, 863
Hin6I	GCGC	2 cut(s)	223, 430
HinP1I	GCGC	2 cut(s)	223, 430
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	5 cut(s)	167, 173, 689, 1052, 1058
HpaII	CCGG	4 cut(s)	45, 266, 578, 919
HphI	GGTGA	3 cut(s)	161, 280, 583
Hpy188I	TCNGA	9 cut(s)	139, 172, 193, 595, 784, 795, 981, 1057, 1063
Hpy188III	TCNNGA	1 cut(s)	248
HpyAV	CCTTC	7 cut(s)	47, 236, 654, 682, 789, 881, 1040
HpyCH4III	ACNGT	3 cut(s)	274, 527, 562
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	655, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 384, 639, 652
HpyF3I	CTNAG	3 cut(s)	747, 794, 1010
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	659, 848, 863
HspAI	GCGC	2 cut(s)	223, 430
KroI	GCCGGC	1 cut(s)	918
KroNI	GCCGGC	1 cut(s)	920
Ksp22I	TGATCA	2 cut(s)	244, 951
Kzo9I	GATC	5 cut(s)	244, 373, 679, 797, 951
LmnI	GCTCC	4 cut(s)	356, 736, 773, 993
Lsp1109I	GCAGC	2 cut(s)	193, 903
MaeI	CTAG	3 cut(s)	156, 603, 1104
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	268, 605, 1073
MalI	GATC	5 cut(s)	246, 375, 681, 799, 953
MboI	GATC	5 cut(s)	244, 373, 679, 797, 951
MboII	GAAGA	5 cut(s)	19, 100, 254, 383, 443
MhlI	GDGCHC	2 cut(s)	778, 1101
MmeI	TCCRAC	2 cut(s)	429, 435
MroNI	GCCGGC	1 cut(s)	918
MroXI	GAANNNNTTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	1104
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	4 cut(s)	45, 266, 578, 919
MspR9I	CCNGG	2 cut(s)	45, 1037
MvaI	CCWGG	1 cut(s)	1037
MwoI	GCNNNNNNNGC	4 cut(s)	69, 384, 639, 652
NaeI	GCCGGC	1 cut(s)	920
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	244, 373, 679, 797, 951
NgoMIV	GCCGGC	1 cut(s)	918
NlaIII	CATG	3 cut(s)	659, 848, 863
NlaIV	GGNNCC	1 cut(s)	775
NmuCI	GTSAC	2 cut(s)	268, 1073
OliI	CACNNNNGTG	1 cut(s)	1104
PceI	AGGCCT	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PdiI	GCCGGC	1 cut(s)	920
PdmI	GAANNNNTTC	1 cut(s)	671
PfeI	GAWTC	5 cut(s)	167, 173, 689, 1052, 1058
PflMI	CCANNNNNTGG	2 cut(s)	1042, 1093
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	208, 893
Ple19I	CGATCG	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	1035
PspFI	CCCAGC	2 cut(s)	1067, 1093
PspGI	CCWGG	1 cut(s)	1035
PspN4I	GGNNCC	1 cut(s)	775
PspPI	GGNCC	3 cut(s)	239, 645, 1026
PstNI	CAGNNNCTG	1 cut(s)	1067
PvuI	CGATCG	1 cut(s)	682
RsaI	GTAC	2 cut(s)	276, 436
RsaNI	GTAC	2 cut(s)	275, 435
RseI	CAYNNNNRTG	1 cut(s)	1104
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	2 cut(s)	207, 892
Sau3AI	GATC	5 cut(s)	244, 373, 679, 797, 951
Sau96I	GGNCC	3 cut(s)	239, 645, 1026
ScrFI	CCNGG	2 cut(s)	45, 1037
SduI	GDGCHC	2 cut(s)	778, 1101
SetI	ASST	6 cut(s)	131, 534, 601, 965, 1002, 1069
SinI	GGWCC	1 cut(s)	1026
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
SpeI	ACTAGT	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	830
SsiI	CCGC	2 cut(s)	70, 457
SspMI	CTAG	3 cut(s)	156, 603, 1104
StuI	AGGCCT	1 cut(s)	830
StyD4I	CCNGG	2 cut(s)	43, 1035
TaaI	ACNGT	3 cut(s)	274, 527, 562
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	7 cut(s)	24, 86, 122, 176, 687, 800, 914
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	5 cut(s)	167, 173, 689, 1052, 1058
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TscAI	CASTG	2 cut(s)	755, 961
TseFI	GTSAC	2 cut(s)	268, 1073
TseI	GCWGC	2 cut(s)	206, 891
Tsp45I	GTSAC	2 cut(s)	268, 1073
TspDTI	ATGAA	3 cut(s)	20, 227, 900
TspRI	CASTG	2 cut(s)	755, 961
Van91I	CCANNNNNTGG	2 cut(s)	1042, 1093
VpaK11BI	GGWCC	1 cut(s)	1026
XapI	RAATTY	4 cut(s)	179, 785, 816, 1082
XmnI	GAANNNNTTC	1 cut(s)	671
XspI	CTAG	3 cut(s)	156, 603, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.