Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Forward (+)

50498251 .. 50498718

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATTCACGATGTTCCGGAGGGGAGGGAGATTTGCCTGAGCTACTTTCCTGTTAACCAGGCTTATTCGAGCAGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTGTGTCAATGTGATCGATGCAAGGTTGAGGCGAATTGGTCTGACAATGAGGAGGTTGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATTGAAGTAGAAGCTCAAGGAGAAGCTGATTTTCCACATGCCTATTTCTTTGTGAGATTTATGTGTAGCAGAACCAATTGCTGGGGCACGCTGGCGCCTTTGCCCCCAAAAGACGATGGAACGCCTTCGGATGCTATGGAATGCAATGTGTGTGGAAGTGTTAGGAAAGATGAGGGGATTAGTGGTCATGGACAAAATGGGCTCTCTTTGGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

155

Amino Acids

17.11

Weight (kDa)

4.06

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	2 cut(s)	214, 330
AccIII	TCCGGA	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	344
AfiI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	57, 207
AluBI	AGCT	4 cut(s)	42, 239, 263, 275
AluI	AGCT	4 cut(s)	42, 239, 263, 275
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	453
BbvCI	CCTCAGC	2 cut(s)	90, 183
BccI	CCATC	2 cut(s)	359, 455
BciT130I	CCWGG	2 cut(s)	59, 209
BfoI	RGCGCY	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	59, 209
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	59, 209
BmsI	GCATC	2 cut(s)	113, 370
Bpu10I	CCTNAGC	3 cut(s)	38, 90, 183
BpuEI	CTTGAG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 214, 330
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	59, 209
BseCI	ATCGAT	1 cut(s)	121
BseGI	GGATG	3 cut(s)	199, 385, 466
BseLI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	29, 81, 174
BseRI	GAGGAG	2 cut(s)	170, 179
BseSI	GKGCMC	1 cut(s)	338
BseYI	CCCAGC	2 cut(s)	239, 330
BshNI	GGYRCC	1 cut(s)	343
BshVI	ATCGAT	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
BsmI	GAATGC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	338, 453
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	118
BspCNI	CTCAG	3 cut(s)	30, 82, 175
BspDI	ATCGAT	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	400
BssMI	GATC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	59, 209
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	74, 338, 342
BstDEI	CTNAG	3 cut(s)	38, 90, 183
BstF5I	GGATG	3 cut(s)	199, 385, 466
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstNI	CCWGG	2 cut(s)	59, 209
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	57, 207
BstSLI	GKGCMC	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	121
BsuTUI	ATCGAT	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	199, 385, 466
Cac8I	GCNNGC	3 cut(s)	74, 338, 342
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	2 cut(s)	287, 437
CviJI	RGCY	9 cut(s)	42, 62, 89, 182, 239, 263, 275, 451, 465
CviKI_1	RGCY	9 cut(s)	42, 62, 89, 182, 239, 263, 275, 451, 465
DdeI	CTNAG	3 cut(s)	38, 90, 183
DinI	GGCGCC	1 cut(s)	345
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	57, 207
EcoT38I	GRGCYC	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	345
EheI	GGCGCC	1 cut(s)	345
FaeI	CATG	2 cut(s)	290, 440
FaiI	YATR	6 cut(s)	99, 191, 288, 311, 386, 438
FatI	CATG	2 cut(s)	286, 436
FokI	GGATG	2 cut(s)	206, 392
FriOI	GRGCYC	1 cut(s)	453
GlaI	GCGC	1 cut(s)	345
GsaI	CCCAGC	2 cut(s)	243, 334
HaeII	RGCGCY	1 cut(s)	347
HapII	CCGG	1 cut(s)	17
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	2 cut(s)	290, 440
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	4 cut(s)	4, 82, 224, 230
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	4 cut(s)	148, 229, 235, 379
Hpy188III	TCNNGA	2 cut(s)	8, 17
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	3 cut(s)	164, 212, 384
HpyCH4V	TGCA	2 cut(s)	126, 393
HpyF3I	CTNAG	3 cut(s)	38, 90, 183
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	2 cut(s)	290, 440
HspAI	GCGC	1 cut(s)	344
KasI	GGCGCC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	118
LweI	GCATC	2 cut(s)	113, 370
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	338, 453
MluCI	AATT	2 cut(s)	139, 325
Mly113I	GGCGCC	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	76
MroI	TCCGGA	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	59, 209
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	59, 209
NarI	GGCGCC	1 cut(s)	344
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	290, 440
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	290
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	4, 224, 230
PflMI	CCANNNNNTGG	2 cut(s)	214, 330
PleI	GAGTC	1 cut(s)	76
PluTI	GGCGCC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	57, 207
PspFI	CCCAGC	2 cut(s)	239, 330
PspGI	CCWGG	2 cut(s)	57, 207
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	199
PstNI	CAGNNNCTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	59, 209
SduI	GDGCHC	2 cut(s)	338, 453
SetI	ASST	8 cut(s)	44, 132, 162, 175, 189, 241, 265, 277
SfaNI	GCATC	2 cut(s)	113, 370
SfoI	GGCGCC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	139, 325
SspDI	GGCGCC	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	57, 207
TaqI	TCGA	2 cut(s)	68, 121
TasI	AATT	2 cut(s)	139, 325
TfiI	GAWTC	3 cut(s)	4, 224, 230
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
Van91I	CCANNNNNTGG	2 cut(s)	214, 330
VpaK11BI	GGWCC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.