FvH4_2g26270

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002127
Physical Location & Seq
Forward (+)
21141181 .. 21143548
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26270.t1

Sequence Viewer

Length: 807 bp
ATGTGTGCGTCCCGGACAGCTCCGTTACTGAGCACTACTGCGATGTTTGTTTCAAATCCACTAACCTCAAGAAGTGCTCCGGTTGCAAGACTGTACTACTGGTCTAGCACATGCCAGAAGGCGGAATGGAAACTCCACCGTCTCGAATGTGAAGCTTCGAGGAAGCTTCCGATACAGTTCATTGGTCAAATTGCGCCACCGATTCGTCTCAACATCAGACTCCTACTTCGTTCTAAGTTAGAATCTCAGAAGATTATTCCTGTTTCTGCTATGGACAACTACAATTTGGTGAAGGCTTTGGTGGCTCACATGTCGAAGATTGATGAGGAGAAAAGGAGGATGTATGTTGATCTGGTTAATCTTGTCAACTTGATACTGCCAGATATCAATAGAAAGGAGGCTGTAAAGAACTTCTCCAAGATAGCATTCAACAACCAAGCAATTAATGCCGGGGGATCTAAGCACGTGGGTAGAGGACTCTATCCTGTGATTTCATTCATGAACCACAGCTGCTTGCCTAATTGTATTGTACTAAATGAGGGAAGGACAGCTGTTGTTCGTGCTGTGCAACATATACCCAAAGGAGCTGAGGTGTTGATAAGTTACATCGACACTGCTGAAAGCACTGTGACTCGGCAAAAGAAGCTGAAGGAGGGATACCTTTTTACCTGCACATGTCCCCGCTGCATTAAAGTGGGTCAGTATGATATCCATGAAAGTGCAGTTCTGGAAGGCTACCGATGTACGGATAATGAATGCGATGGCCTCTTGCTTTGCGACTCTGATGATAATGGATTCATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET TPR_12 zf-MYND

Protein Analysis

269

Amino Acids

30.04

Weight (kDa)

8.97

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 130 - 202 5.3e-10 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 677
AciI CCGC 2 cut(s) 122, 682
AclWI GGATC 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 668
AcvI CACGTG 1 cut(s) 466
AfaI GTAC 3 cut(s) 95, 531, 745
AfiI CCNNNNNNNGG 2 cut(s) 121, 745
AflIII ACRYGT 2 cut(s) 309, 674
AgsI TTSAA 2 cut(s) 54, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 7 cut(s) 20, 155, 166, 510, 551, 587, 646
AluI AGCT 7 cut(s) 20, 155, 166, 510, 551, 587, 646
Alw21I GWGCWC 2 cut(s) 35, 79
Alw26I GTCTC 2 cut(s) 146, 212
AlwI GGATC 1 cut(s) 463
AoxI GGCC 1 cut(s) 763
ApeKI GCWGC 2 cut(s) 510, 684
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 1 cut(s) 196
AsuC2I CCSGG 2 cut(s) 13, 451
AsuHPI GGTGA 1 cut(s) 301
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BbrPI CACGTG 1 cut(s) 466
Bbv12I GWGCWC 2 cut(s) 35, 79
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 497, 671
BccI CCATC 1 cut(s) 755
BciVI GTATCC 1 cut(s) 650
BcnI CCSGG 2 cut(s) 13, 451
BcoDI GTCTC 2 cut(s) 146, 212
BfaI CTAG 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 677
BfuI GTATCC 1 cut(s) 650
BisI GCNGC 2 cut(s) 511, 685
BlsI GCNGC 2 cut(s) 512, 686
Bme1390I CCNGG 2 cut(s) 13, 451
BmrFI CCNGG 2 cut(s) 13, 451
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 52
BpuMI CCSGG 2 cut(s) 13, 451
BsaAI YACGTR 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 745
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 121, 745
BseMII CTCAG 3 cut(s) 20, 260, 579
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 497, 671
BsgI GTGCAG 2 cut(s) 655, 741
BshFI GGCC 1 cut(s) 765
BsiHKAI GWGCWC 2 cut(s) 35, 79
BsiSI CCGG 3 cut(s) 13, 80, 450
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 2 cut(s) 121, 745
BsmAI GTCTC 2 cut(s) 146, 212
BsmBI CGTCTC 2 cut(s) 146, 212
BsmFI GGGAC 1 cut(s) 663
BsmI GAATGC 2 cut(s) 425, 761
BsnI GGCC 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 35, 79
Bsp143I GATC 2 cut(s) 349, 455
BspACI CCGC 2 cut(s) 122, 682
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 3 cut(s) 21, 259, 580
BspHI TCATGA 1 cut(s) 498
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 463
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 2 cut(s) 349, 455
Bst4CI ACNGT 4 cut(s) 93, 140, 177, 628
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 515
BstDEI CTNAG 5 cut(s) 29, 234, 246, 459, 588
BstF5I GGATG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 352, 458
BstMAI GTCTC 2 cut(s) 146, 212
BstMBI GATC 2 cut(s) 349, 455
BstMWI GCNNNNNNNGC 4 cut(s) 83, 302, 446, 643
BstNSI RCATGY 3 cut(s) 114, 313, 678
BstSCI CCNGG 2 cut(s) 11, 449
BstV1I GCAGC 2 cut(s) 497, 671
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 1 cut(s) 765
BtgZI GCGATG 2 cut(s) 56, 774
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 612, 624
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 1 cut(s) 515
CciI TCATGA 1 cut(s) 498
CfoI GCGC 1 cut(s) 196
Csp6I GTAC 3 cut(s) 94, 530, 744
CviAII CATG 5 cut(s) 111, 310, 499, 675, 713
CviQI GTAC 3 cut(s) 94, 530, 744
DdeI CTNAG 5 cut(s) 29, 234, 246, 459, 588
DpnI GATC 2 cut(s) 351, 457
DpnII GATC 2 cut(s) 349, 455
EciI GGCGGA 1 cut(s) 137
Eco32I GATATC 2 cut(s) 385, 709
Eco57I CTGAAG 1 cut(s) 668
Eco72I CACGTG 1 cut(s) 466
EcoRV GATATC 2 cut(s) 385, 709
Esp3I CGTCTC 2 cut(s) 146, 212
FaeI CATG 5 cut(s) 114, 313, 502, 678, 716
FaqI GGGAC 1 cut(s) 663
FatI CATG 5 cut(s) 110, 309, 498, 674, 712
FauI CCCGC 1 cut(s) 689
FauNDI CATATG 1 cut(s) 800
Fnu4HI GCNGC 2 cut(s) 511, 685
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 511, 685
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 511, 685
HaeIII GGCC 1 cut(s) 765
HapII CCGG 3 cut(s) 13, 80, 450
HhaI GCGC 1 cut(s) 196
Hin1II CATG 5 cut(s) 114, 313, 502, 678, 716
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 2 cut(s) 153, 164
HinfI GANTC 7 cut(s) 202, 219, 242, 477, 631, 779, 795
HpaII CCGG 3 cut(s) 13, 80, 450
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 171, 218, 249, 784
Hpy188III TCNNGA 4 cut(s) 69, 143, 499, 728
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 5 cut(s) 112, 286, 537, 643, 725
HpyCH4III ACNGT 4 cut(s) 93, 140, 177, 628
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 5 cut(s) 86, 568, 672, 687, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 302, 446, 643
HpyF3I CTNAG 5 cut(s) 29, 234, 246, 459, 588
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 5 cut(s) 114, 313, 502, 678, 716
HspAI GCGC 1 cut(s) 194
Kzo9I GATC 2 cut(s) 349, 455
LmnI GCTCC 3 cut(s) 25, 82, 584
Lsp1109I GCAGC 2 cut(s) 497, 671
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 3 cut(s) 24, 602, 628
MalI GATC 2 cut(s) 351, 457
MboI GATC 2 cut(s) 349, 455
MboII GAAGA 2 cut(s) 262, 328
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 2 cut(s) 35, 79
MluCI AATT 4 cut(s) 189, 283, 441, 520
MlyI GAGTC 4 cut(s) 213, 471, 625, 773
MseI TTAA 4 cut(s) 357, 444, 690, 805
MslI CAYNNNNRTG 2 cut(s) 692, 717
MspA1I CMGCKG 3 cut(s) 510, 551, 684
MspI CCGG 3 cut(s) 13, 80, 450
MspR9I CCNGG 2 cut(s) 13, 451
Mva1269I GAATGC 2 cut(s) 425, 761
MwoI GCNNNNNNNGC 4 cut(s) 83, 302, 446, 643
NciI CCSGG 2 cut(s) 13, 451
NdeI CATATG 1 cut(s) 800
NdeII GATC 2 cut(s) 349, 455
NlaIII CATG 5 cut(s) 114, 313, 502, 678, 716
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 3 cut(s) 114, 313, 678
PagI TCATGA 1 cut(s) 498
PciI ACATGT 2 cut(s) 309, 674
PctI GAATGC 2 cut(s) 425, 761
PfeI GAWTC 3 cut(s) 202, 242, 795
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 2 cut(s) 512, 686
PleI GAGTC 4 cut(s) 213, 471, 625, 773
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
PpsI GAGTC 4 cut(s) 213, 471, 625, 773
Ppu21I YACGTR 1 cut(s) 466
PscI ACATGT 2 cut(s) 309, 674
PshBI ATTAAT 1 cut(s) 444
PspCI CACGTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 455
PvuII CAGCTG 2 cut(s) 510, 551
RsaI GTAC 3 cut(s) 95, 531, 745
RsaNI GTAC 3 cut(s) 94, 530, 744
RseI CAYNNNNRTG 2 cut(s) 692, 717
SaqAI TTAA 4 cut(s) 357, 444, 690, 805
SatI GCNGC 2 cut(s) 511, 685
Sau3AI GATC 2 cut(s) 349, 455
SchI GAGTC 4 cut(s) 213, 471, 625, 773
ScrFI CCNGG 2 cut(s) 13, 451
SduI GDGCHC 2 cut(s) 35, 79
SmiMI CAYNNNNRTG 2 cut(s) 692, 717
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 4 cut(s) 189, 283, 441, 520
SsiI CCGC 2 cut(s) 122, 682
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 11, 449
TaaI ACNGT 4 cut(s) 93, 140, 177, 628
TaiI ACGT 1 cut(s) 468
TaqI TCGA 4 cut(s) 144, 158, 314, 609
TasI AATT 4 cut(s) 189, 283, 441, 520
TatI WGTACW 2 cut(s) 93, 529
TfiI GAWTC 3 cut(s) 202, 242, 795
Tru1I TTAA 4 cut(s) 357, 444, 690, 805
Tru9I TTAA 4 cut(s) 357, 444, 690, 805
TscAI CASTG 2 cut(s) 619, 631
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 2 cut(s) 510, 684
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 7 cut(s) 169, 483, 487, 515, 729, 768, 787
TspGWI ACGGA 2 cut(s) 12, 761
TspRI CASTG 2 cut(s) 619, 631
VspI ATTAAT 1 cut(s) 444
XceI RCATGY 3 cut(s) 114, 313, 678
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.