Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009599.1

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

1087 .. 2271

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgacaaaggaggtgaggctaacggagatacaaggcagaggaaggtcattagtggcggctcagccactcaaaggcggccaaatcgttctccgcgactctcctctcctcctctactccgctcttcctctcctcgctccctctcctcccccttattgcgaccactgcttcaaaaccctaaacccacaaaccgcccccatttcactctgccaatcctgctccctccacgccttctgcacccccaattgcctctccgccgcccagtcctcctcccacactcaatgggtctgccaatccctcacgaaattacgaaattgccactccccgctctccggccagcccgccgaccgtcaggtccaagctcgcttcttgatcgccgcttacaacctcgccgtcacttcgccgtcgagtttccaggtgctgctctctcttcagggccagccgcaggactccgccgacgctcagttcctgcattctctgatttcgaccctctgccctccgccgcagcagcaactgttttcggtggagctcacggcggcgctgttggccaaggacaagatgaatgcgtttggattgatggagcccccttcggaatttgggctgagatcgagcagagcctatggaatttatcccaaggcctcgtttttcaaccatgattgtctccccaatgcgtgccgatttgattatgttgatgaaggcagcacggagattattgtgaggatgattcacgatgttccggaggggagggagatttgcctgagctactttcctgttaaccaggcttattcgagcaggcagaggactctggctgaggactatgggtttgtgtgtcaatgtgatcgatgcaaggttgaggcgagttggtctgacaatgaggaggttgaggaggaaggtggttctgctgaggttatggatgaggaccaagaccaggaaatggaaggagaatcggaatcagaagctgggagtgacattgaagcagaagctcaaggagaagctgattttccacatgcctatttctttgtgagatttatgtgtagcagaaccaattgctggggcacgctagcgcctttgccccccaaagacgatggaactccttcggatgctatggaatgcaatgtgtgtggaagtgttaagaaagatgaggagattagtggtcatggacaaaatgggctctctttggatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

394

Amino Acids

43.17

Weight (kDa)

4.67

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB7I	CCANNNNNTGG	2 cut(s)	931, 1047
AccBSI	CCGCTC	2 cut(s)	119, 325
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	733
AcoI	YGGCCR	3 cut(s)	76, 331, 543
AcsI	RAATTY	2 cut(s)	590, 621
AcuI	CTGAAG	1 cut(s)	413
AfiI	CCNNNNNNNGG	6 cut(s)	71, 329, 442, 925, 931, 1047
AgsI	TTSAA	3 cut(s)	169, 646, 971
AjnI	CCWGG	3 cut(s)	411, 774, 924
AluBI	AGCT	6 cut(s)	359, 526, 759, 956, 980, 992
AluI	AGCT	6 cut(s)	359, 526, 759, 956, 980, 992
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	662
AlwNI	CAGNNNCTG	4 cut(s)	418, 466, 511, 956
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	5 cut(s)	76, 331, 433, 543, 633
ApeKI	GCWGC	4 cut(s)	418, 502, 505, 696
ApoI	RAATTY	2 cut(s)	590, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
Asp700I	GAANNNNTTC	1 cut(s)	1090
AspLEI	GCGC	2 cut(s)	538, 1063
AspS9I	GGNCC	3 cut(s)	352, 433, 916
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	1057
AvaII	GGWCC	2 cut(s)	352, 916
BaeGI	GKGCMC	1 cut(s)	1055
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	3 cut(s)	528, 582, 1170
Bbv12I	GWGCWC	1 cut(s)	528
BbvCI	CCTCAGC	2 cut(s)	807, 900
BbvI	GCAGC	4 cut(s)	405, 514, 517, 708
BccI	CCATC	3 cut(s)	568, 1076, 1172
BceAI	ACGGC	3 cut(s)	374, 385, 546
BciT130I	CCWGG	3 cut(s)	413, 776, 926
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	1058
BfoI	RGCGCY	2 cut(s)	539, 1064
BlpI	GCTNAGC	1 cut(s)	60
Bme1390I	CCNGG	3 cut(s)	413, 776, 926
Bme18I	GGWCC	2 cut(s)	352, 916
BmgT120I	GGNCC	3 cut(s)	352, 433, 916
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	3 cut(s)	413, 776, 926
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	830, 1087
BmtI	GCTAGC	1 cut(s)	1061
BmuI	ACTGGG	1 cut(s)	253
Bpu10I	CCTNAGC	3 cut(s)	755, 807, 900
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	966
Bsa29I	ATCGAT	1 cut(s)	838
BsaJI	CCNNGG	2 cut(s)	546, 630
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 329, 442, 925, 931, 1047
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	1117
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	3 cut(s)	413, 776, 926
BseCI	ATCGAT	1 cut(s)	838
BseDI	CCNNGG	2 cut(s)	546, 630
BseGI	GGATG	4 cut(s)	723, 916, 1102, 1183
BseLI	CCNNNNNNNGG	6 cut(s)	71, 329, 442, 925, 931, 1047
BseMI	GCAATG	1 cut(s)	1117
BseMII	CTCAG	6 cut(s)	74, 473, 590, 746, 798, 891
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	9 cut(s)	90, 95, 98, 119, 132, 256, 887, 896, 1154
BseSI	GKGCMC	1 cut(s)	1055
BseXI	GCAGC	4 cut(s)	405, 514, 517, 708
BseYI	CCCAGC	2 cut(s)	956, 1047
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	5 cut(s)	78, 333, 435, 545, 635
BshVI	ATCGAT	1 cut(s)	838
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	330, 734
BslI	CCNNNNNNNGG	6 cut(s)	71, 329, 442, 925, 931, 1047
BsmAI	GTCTC	1 cut(s)	662
BsmI	GAATGC	3 cut(s)	469, 565, 1112
BsnI	GGCC	5 cut(s)	78, 333, 435, 545, 635
Bsp1286I	GDGCHC	4 cut(s)	528, 582, 1055, 1170
Bsp13I	TCCGGA	1 cut(s)	733
Bsp143I	GATC	3 cut(s)	369, 602, 835
Bsp1720I	GCTNAGC	1 cut(s)	60
BspANI	GGCC	5 cut(s)	78, 333, 435, 545, 635
BspCNI	CTCAG	6 cut(s)	73, 472, 591, 747, 799, 892
BspDI	ATCGAT	1 cut(s)	838
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	579
BspOI	GCTAGC	1 cut(s)	1061
BspQI	GCTCTTC	1 cut(s)	126
BsrBI	CCGCTC	2 cut(s)	119, 325
BsrDI	GCAATG	1 cut(s)	1117
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	546, 630
BssMI	GATC	3 cut(s)	369, 602, 835
BssT1I	CCWWGG	2 cut(s)	546, 630
Bst2UI	CCWGG	3 cut(s)	413, 776, 926
Bst4CI	ACNGT	2 cut(s)	347, 513
Bst6I	CTCTTC	2 cut(s)	126, 432
BstC8I	GCNNGC	8 cut(s)	335, 339, 361, 437, 670, 791, 1055, 1059
BstDEI	CTNAG	6 cut(s)	60, 459, 599, 755, 807, 900
BstF5I	GGATG	4 cut(s)	723, 916, 1102, 1183
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	539, 1064
BstHHI	GCGC	2 cut(s)	538, 1063
BstKTI	GATC	3 cut(s)	372, 605, 838
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	3 cut(s)	369, 602, 835
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 213, 505, 542
BstNI	CCWGG	3 cut(s)	413, 776, 926
BstNSI	RCATGY	1 cut(s)	1007
BstSCI	CCNGG	3 cut(s)	411, 774, 924
BstSLI	GKGCMC	1 cut(s)	1055
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	405, 514, 517, 708
Bsu15I	ATCGAT	1 cut(s)	838
BsuRI	GGCC	5 cut(s)	78, 333, 435, 545, 635
BsuTUI	ATCGAT	1 cut(s)	838
BtsCI	GGATG	4 cut(s)	723, 916, 1102, 1183
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	8 cut(s)	335, 339, 361, 437, 670, 791, 1055, 1059
CaiI	CAGNNNCTG	4 cut(s)	418, 466, 511, 956
CfoI	GCGC	2 cut(s)	538, 1063
Cfr13I	GGNCC	3 cut(s)	352, 433, 916
ClaI	ATCGAT	1 cut(s)	838
CseI	GACGC	1 cut(s)	464
CspCI	CAANNNNNGTGG	2 cut(s)	1099, 1134
CviAII	CATG	3 cut(s)	650, 1004, 1154
DdeI	CTNAG	6 cut(s)	60, 459, 599, 755, 807, 900
DpnI	GATC	3 cut(s)	371, 604, 837
DpnII	GATC	3 cut(s)	369, 602, 835
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	3 cut(s)	76, 331, 543
Eam1104I	CTCTTC	2 cut(s)	126, 432
EarI	CTCTTC	2 cut(s)	126, 432
EciI	GGCGGA	3 cut(s)	241, 439, 486
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	546, 630
Eco147I	AGGCCT	1 cut(s)	635
Eco24I	GRGCYC	3 cut(s)	528, 582, 1170
Eco47I	GGWCC	2 cut(s)	352, 916
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	411, 774, 924
EcoT14I	CCWWGG	2 cut(s)	546, 630
EcoT38I	GRGCYC	3 cut(s)	528, 582, 1170
ErhI	CCWWGG	2 cut(s)	546, 630
FaeI	CATG	3 cut(s)	653, 1007, 1157
FaiI	YATR	9 cut(s)	618, 651, 684, 816, 908, 1005, 1028, 1103, 1155
FatI	CATG	3 cut(s)	649, 1003, 1153
FauI	CCCGC	2 cut(s)	330, 346
FokI	GGATG	3 cut(s)	730, 923, 1109
FriOI	GRGCYC	3 cut(s)	528, 582, 1170
FspBI	CTAG	1 cut(s)	1058
GlaI	GCGC	2 cut(s)	537, 1062
GsaI	CCCAGC	2 cut(s)	960, 1051
HaeII	RGCGCY	2 cut(s)	539, 1064
HaeIII	GGCC	5 cut(s)	78, 333, 435, 545, 635
HapII	CCGG	2 cut(s)	330, 734
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	2 cut(s)	538, 1063
Hin1II	CATG	3 cut(s)	653, 1007, 1157
Hin6I	GCGC	2 cut(s)	536, 1061
HinP1I	GCGC	2 cut(s)	536, 1061
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	6 cut(s)	95, 446, 721, 799, 941, 947
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	2 cut(s)	330, 734
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	6 cut(s)	477, 589, 865, 946, 952, 1096
Hpy188III	TCNNGA	4 cut(s)	298, 367, 725, 734
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	2 cut(s)	406, 458
HpyAV	CCTTC	7 cut(s)	36, 238, 594, 686, 881, 929, 1101
HpyCH4III	ACNGT	2 cut(s)	347, 513
HpyCH4V	TGCA	4 cut(s)	234, 469, 843, 1110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 213, 505, 542
HpyF3I	CTNAG	6 cut(s)	60, 459, 599, 755, 807, 900
Hsp92II	CATG	3 cut(s)	653, 1007, 1157
HspAI	GCGC	2 cut(s)	536, 1061
Kpn2I	TCCGGA	1 cut(s)	733
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	369, 602, 835
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	139, 221, 523, 577
Lsp1109I	GCAGC	4 cut(s)	405, 514, 517, 708
LweI	GCATC	2 cut(s)	830, 1087
MaeI	CTAG	1 cut(s)	1058
MaeIII	GTNAC	2 cut(s)	391, 962
MalI	GATC	3 cut(s)	371, 604, 837
MbiI	CCGCTC	2 cut(s)	119, 325
MboI	GATC	3 cut(s)	369, 602, 835
MboII	GAAGA	2 cut(s)	113, 419
MfeI	CAATTG	2 cut(s)	241, 1042
MhlI	GDGCHC	4 cut(s)	528, 582, 1055, 1170
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	6 cut(s)	241, 302, 310, 590, 621, 1042
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	89, 440, 793
Mox20I	TGGCCA	1 cut(s)	545
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	1090
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	2 cut(s)	771, 1128
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	2 cut(s)	330, 734
MspR9I	CCNGG	3 cut(s)	413, 776, 926
MunI	CAATTG	2 cut(s)	241, 1042
Mva1269I	GAATGC	3 cut(s)	469, 565, 1112
MvaI	CCWGG	3 cut(s)	413, 776, 926
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	162, 213, 505, 542
NdeII	GATC	3 cut(s)	369, 602, 835
NheI	GCTAGC	1 cut(s)	1057
NlaIII	CATG	3 cut(s)	653, 1007, 1157
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	2 cut(s)	391, 962
NspI	RCATGY	1 cut(s)	1007
PceI	AGGCCT	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	3 cut(s)	469, 565, 1112
PdmI	GAANNNNTTC	1 cut(s)	1090
PfeI	GAWTC	3 cut(s)	721, 941, 947
PflMI	CCANNNNNTGG	2 cut(s)	931, 1047
PleI	GAGTC	3 cut(s)	89, 440, 793
PpsI	GAGTC	3 cut(s)	89, 440, 793
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	411, 774, 924
PspFI	CCCAGC	2 cut(s)	956, 1047
PspGI	CCWGG	3 cut(s)	411, 774, 924
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	3 cut(s)	352, 433, 916
PstNI	CAGNNNCTG	4 cut(s)	418, 466, 511, 956
SacI	GAGCTC	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	771, 1128
Sau3AI	GATC	3 cut(s)	369, 602, 835
Sau96I	GGNCC	3 cut(s)	352, 433, 916
SchI	GAGTC	3 cut(s)	89, 440, 793
ScrFI	CCNGG	3 cut(s)	413, 776, 926
SduI	GDGCHC	4 cut(s)	528, 582, 1055, 1170
SfaNI	GCATC	2 cut(s)	830, 1087
SinI	GGWCC	2 cut(s)	352, 916
SmlI	CTYRAG	1 cut(s)	981
SmoI	CTYRAG	1 cut(s)	981
Sse9I	AATT	6 cut(s)	241, 302, 310, 590, 621, 1042
SseBI	AGGCCT	1 cut(s)	635
SspMI	CTAG	1 cut(s)	1058
SstI	GAGCTC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	635
StyD4I	CCNGG	3 cut(s)	411, 774, 924
StyI	CCWWGG	2 cut(s)	546, 630
TaaI	ACNGT	2 cut(s)	347, 513
TaqI	TCGA	5 cut(s)	404, 482, 605, 785, 838
TasI	AATT	6 cut(s)	241, 302, 310, 590, 621, 1042
TauI	GCSGC	7 cut(s)	59, 78, 257, 377, 442, 502, 536
TfiI	GAWTC	3 cut(s)	721, 941, 947
Tru1I	TTAA	2 cut(s)	771, 1128
Tru9I	TTAA	2 cut(s)	771, 1128
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	2 cut(s)	391, 962
TseI	GCWGC	4 cut(s)	418, 502, 505, 696
Tsp45I	GTSAC	2 cut(s)	391, 962
TspDTI	ATGAA	2 cut(s)	572, 705
TspGWI	ACGGA	2 cut(s)	38, 716
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	2 cut(s)	931, 1047
VpaK11BI	GGWCC	2 cut(s)	352, 916
XapI	RAATTY	2 cut(s)	590, 621
XceI	RCATGY	1 cut(s)	1007
XmnI	GAANNNNTTC	1 cut(s)	1090
XspI	CTAG	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.