Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

50080717 .. 50174990

Gene Structure 94274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG279800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCAAAGAGCAAAGCCCGCCAGCACGCAAAATCGAAGAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGGTGACTGTACAAGAATGTATTGCCTTTTTTGATATAGATGTTGAGGAATATGAGTTTATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTATTTCTTACATAGAAGATCGCCAAAGTCGCAACGCCAACACCAACTCCAACTCCAACTTAACAGGTGAGGTTGCCCTTTCCTTTGTAGTTGAGTGCATTGCTTTTGTGGTTTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

5.37

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	106
AhlI	ACTAGT	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	129
AoxI	GGCC	2 cut(s)	239, 470
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	161, 280, 434
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	267
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	45
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 392, 416, 422
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	241, 472
BsiSI	CCGG	2 cut(s)	45, 266
BsnI	GGCC	2 cut(s)	241, 472
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	244, 373
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	241, 472
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	244, 373
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	83, 267
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	70, 74, 78
BstDEI	CTNAG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	247, 376
BstMBI	GATC	2 cut(s)	244, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 384
BstSCI	CCNGG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	241, 472
BtrI	CACGTC	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	70, 74, 78
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	275
CviJI	RGCY	5 cut(s)	68, 206, 235, 241, 472
CviKI_1	RGCY	5 cut(s)	68, 206, 235, 241, 472
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	2 cut(s)	246, 375
DpnII	GATC	2 cut(s)	244, 373
Eam1104I	CTCTTC	2 cut(s)	83, 267
EarI	CTCTTC	2 cut(s)	83, 267
FaiI	YATR	7 cut(s)	165, 188, 212, 302, 318, 326, 368
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	241, 472
HapII	CCGG	2 cut(s)	45, 266
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	167, 173
HpaII	CCGG	2 cut(s)	45, 266
HphI	GGTGA	3 cut(s)	161, 280, 434
Hpy188I	TCNGA	3 cut(s)	139, 172, 193
Hpy188III	TCNNGA	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	47, 236
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 384
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	128
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	244, 373
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	58, 86, 132, 215, 255, 279, 405
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	246, 375
MboI	GATC	2 cut(s)	244, 373
MboII	GAAGA	4 cut(s)	19, 100, 254, 383
MluCI	AATT	3 cut(s)	101, 179, 196
MmeI	TCCRAC	2 cut(s)	429, 435
MnlI	CCTC	7 cut(s)	51, 106, 133, 142, 270, 304, 418
MseI	TTAA	1 cut(s)	416
MspI	CCGG	2 cut(s)	45, 266
MspR9I	CCNGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	69, 384
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	244, 373
NmuCI	GTSAC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	167, 173
PkrI	GCNGC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	244, 373
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	3 cut(s)	131, 424, 429
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	3 cut(s)	101, 179, 196
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	4 cut(s)	24, 86, 122, 176
TasI	AATT	3 cut(s)	101, 179, 196
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	167, 173
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	20, 227
XapI	RAATTY	1 cut(s)	179
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.