Rh4AG281000

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002127
Physical Location & Seq
Forward (+)
59606942 .. 59626183
19242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG281000.1

Sequence Viewer

Length: 1188 bp
ATGGCAATGACAAAGGAGGTGAGGCTAACGGAGATACAAGGCAGAGGAAGGTCATTAGTGGCGGCTGAGCCACTCAAAGGCGGCCAAATCGTTCTCCGCGACTCTCCTCTCCTCCTCTACTCCGCTCTTCCTCTCCTCACTCCCTCTCCTCCCCCTTATTGCGACCACTGCTTCAAAACCCTAAACCCACAAACCGCCCCCATTTCACTCTGCCAATCCTGCTCCCTCCACGCCTTCTGCACCCCCAATTGCCTCTCCGCCGCCCAGTCCTCCTCCCACACTCAATGGGTCTGCCAATCCCTCACGAAATTACGAAATTGCCACTCCCCGCTCTCCGGCCAGCCCGCCGACCGTCAGGTCCAAGCTCGCTTCTTGATCGCCGCTTACAACCTCGCCGTCACTTCGCCGTCGAGTTTCCAGGTGCTGCTCTCTCTTCAGGGCCAGCCGCAGGACTCCGCCGCCGACGCTCAGTTCCTGCATTCTCTGATTTCGACCCTCTGCCCTCCGCCGCCGCAGCAGCAACTGTTTTCGGTGGAGCTCACGGCGGCGCTGCTGGCCAAGGACAAGATGAATGCGTTTGGATTGATGGAGCCCCCTTCGGAATTTGGGCTGAGATCGAGCAGAGCCTATGGGATTTATCCCAAGGCCTCGTTTTTCAACCATGATTGTCTTCCCAATGCGTGCCGATTTGACTATGTTGATGAAGGCAGCACGGAGATTATTGTGAGGATGATTCACGATGTTCCGGAGGGGAGGGAGATTTGCCTGAGCTACTTTCCTGTTAACCAGGCTTATTCGAGCAGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTGTGTCAATGTGATCGATGCAAGGTTGAGGCGAATTGGTCTGACAATGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATTGAAGTAGAAGCTCAAGGAGAAGCTGATTTTCCACATGCATATTTCTTTGTGAGATTTATGTGTAGTAGAACCCATTGCTGGGGCACGCTAGCGCCTTTGCCCCCGAAAGACGATGGAACTCCTTCGGATGCTATGGAATGCAATGTGTGTGGAAGTGTTAGGAAAGATGAGGAGATTAGTGGTCATGGACAAAATGGGCTCTCTTTGGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

395

Amino Acids

43.32

Weight (kDa)

4.74

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 208 - 258 5.5e-08 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 934
AccBSI CCGCTC 2 cut(s) 125, 331
AccII CGCG 1 cut(s) 99
AccIII TCCGGA 1 cut(s) 745
AcoI YGGCCR 3 cut(s) 82, 337, 555
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 1 cut(s) 419
AfiI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 928, 934, 1050, 1051
AgsI TTSAA 3 cut(s) 175, 658, 974
AjnI CCWGG 3 cut(s) 417, 786, 927
AluBI AGCT 6 cut(s) 365, 538, 771, 959, 983, 995
AluI AGCT 6 cut(s) 365, 538, 771, 959, 983, 995
Alw21I GWGCWC 1 cut(s) 540
AlwNI CAGNNNCTG 4 cut(s) 424, 475, 523, 959
Aor13HI TCCGGA 1 cut(s) 745
AoxI GGCC 5 cut(s) 82, 337, 439, 555, 645
ApeKI GCWGC 5 cut(s) 424, 514, 517, 550, 708
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 815, 847
Asp700I GAANNNNTTC 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 550, 1066
AspS9I GGNCC 3 cut(s) 358, 439, 919
AsuHPI GGTGA 1 cut(s) 31
AsuNHI GCTAGC 1 cut(s) 1060
AvaII GGWCC 2 cut(s) 358, 919
BaeGI GKGCMC 1 cut(s) 1058
BalI TGGCCA 1 cut(s) 557
BanII GRGCYC 3 cut(s) 540, 594, 1173
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 2 cut(s) 819, 903
BbvI GCAGC 5 cut(s) 411, 526, 529, 537, 720
BccI CCATC 3 cut(s) 580, 1079, 1175
BceAI ACGGC 3 cut(s) 380, 391, 558
BciT130I CCWGG 3 cut(s) 419, 788, 929
BfaI CTAG 1 cut(s) 1061
BfoI RGCGCY 2 cut(s) 551, 1067
BlpI GCTNAGC 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 419, 788, 929
Bme18I GGWCC 2 cut(s) 358, 919
BmgT120I GGNCC 3 cut(s) 358, 439, 919
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 3 cut(s) 419, 788, 929
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 842, 1090
BmtI GCTAGC 1 cut(s) 1064
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 662
Bpu10I CCTNAGC 3 cut(s) 767, 819, 903
Bpu1102I GCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 969
Bsa29I ATCGAT 1 cut(s) 850
BsaJI CCNNGG 2 cut(s) 558, 642
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 7 cut(s) 77, 335, 448, 928, 934, 1050, 1051
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 3 cut(s) 12, 1045, 1120
BseAI TCCGGA 1 cut(s) 745
BseBI CCWGG 3 cut(s) 419, 788, 929
BseCI ATCGAT 1 cut(s) 850
BseDI CCNNGG 2 cut(s) 558, 642
BseGI GGATG 4 cut(s) 735, 919, 1105, 1186
BseLI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 928, 934, 1050, 1051
BseMI GCAATG 3 cut(s) 12, 1045, 1120
BseMII CTCAG 6 cut(s) 57, 482, 602, 758, 810, 894
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 8 cut(s) 96, 101, 104, 125, 138, 262, 899, 1157
BseSI GKGCMC 1 cut(s) 1058
BseXI GCAGC 5 cut(s) 411, 526, 529, 537, 720
BseYI CCCAGC 2 cut(s) 959, 1050
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 352
BshFI GGCC 5 cut(s) 84, 339, 441, 557, 647
BshVI ATCGAT 1 cut(s) 850
BsiEI CGRYCG 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 336, 746
BslI CCNNNNNNNGG 7 cut(s) 77, 335, 448, 928, 934, 1050, 1051
BsmI GAATGC 3 cut(s) 478, 577, 1115
BsnI GGCC 5 cut(s) 84, 339, 441, 557, 647
Bsp1286I GDGCHC 4 cut(s) 540, 594, 1058, 1173
Bsp13I TCCGGA 1 cut(s) 745
Bsp143I GATC 3 cut(s) 375, 614, 847
Bsp1720I GCTNAGC 1 cut(s) 66
BspANI GGCC 5 cut(s) 84, 339, 441, 557, 647
BspCNI CTCAG 6 cut(s) 58, 481, 603, 759, 811, 895
BspDI ATCGAT 1 cut(s) 850
BspEI TCCGGA 1 cut(s) 745
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 591
BspOI GCTAGC 1 cut(s) 1064
BspQI GCTCTTC 1 cut(s) 132
BsrBI CCGCTC 2 cut(s) 125, 331
BsrDI GCAATG 3 cut(s) 12, 1045, 1120
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 558, 642
BssMI GATC 3 cut(s) 375, 614, 847
BssT1I CCWWGG 2 cut(s) 558, 642
Bst2UI CCWGG 3 cut(s) 419, 788, 929
Bst4CI ACNGT 2 cut(s) 353, 525
Bst6I CTCTTC 2 cut(s) 132, 438
BstC8I GCNNGC 9 cut(s) 341, 345, 367, 443, 555, 682, 803, 1058, 1062
BstDEI CTNAG 6 cut(s) 66, 468, 611, 767, 819, 903
BstF5I GGATG 4 cut(s) 735, 919, 1105, 1186
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 551, 1067
BstHHI GCGC 2 cut(s) 550, 1066
BstKTI GATC 3 cut(s) 378, 617, 850
BstMBI GATC 3 cut(s) 375, 614, 847
BstMCI CGRYCG 1 cut(s) 352
BstMWI GCNNNNNNNGC 6 cut(s) 168, 219, 464, 514, 517, 554
BstNI CCWGG 3 cut(s) 419, 788, 929
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 3 cut(s) 417, 786, 927
BstSLI GKGCMC 1 cut(s) 1058
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 411, 526, 529, 537, 720
BstV2I GAAGAC 1 cut(s) 662
Bsu15I ATCGAT 1 cut(s) 850
BsuRI GGCC 5 cut(s) 84, 339, 441, 557, 647
BsuTUI ATCGAT 1 cut(s) 850
BtsCI GGATG 4 cut(s) 735, 919, 1105, 1186
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 9 cut(s) 341, 345, 367, 443, 555, 682, 803, 1058, 1062
CaiI CAGNNNCTG 4 cut(s) 424, 475, 523, 959
CfoI GCGC 2 cut(s) 550, 1066
Cfr13I GGNCC 3 cut(s) 358, 439, 919
ClaI ATCGAT 1 cut(s) 850
CseI GACGC 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 1102, 1137
CviAII CATG 3 cut(s) 662, 1007, 1157
DdeI CTNAG 6 cut(s) 66, 468, 611, 767, 819, 903
DpnI GATC 3 cut(s) 377, 616, 849
DpnII GATC 3 cut(s) 375, 614, 847
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 3 cut(s) 82, 337, 555
Eam1104I CTCTTC 2 cut(s) 132, 438
EarI CTCTTC 2 cut(s) 132, 438
EciI GGCGGA 3 cut(s) 247, 445, 495
Ecl136II GAGCTC 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 558, 642
Eco147I AGGCCT 1 cut(s) 647
Eco24I GRGCYC 3 cut(s) 540, 594, 1173
Eco47I GGWCC 2 cut(s) 358, 919
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 538
EcoRII CCWGG 3 cut(s) 417, 786, 927
EcoT14I CCWWGG 2 cut(s) 558, 642
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 3 cut(s) 540, 594, 1173
ErhI CCWWGG 2 cut(s) 558, 642
FaeI CATG 3 cut(s) 665, 1010, 1160
FatI CATG 3 cut(s) 661, 1006, 1156
FauI CCCGC 2 cut(s) 336, 352
FokI GGATG 3 cut(s) 742, 926, 1112
FriOI GRGCYC 3 cut(s) 540, 594, 1173
FspBI CTAG 1 cut(s) 1061
GlaI GCGC 2 cut(s) 549, 1065
GsaI CCCAGC 2 cut(s) 963, 1054
HaeII RGCGCY 2 cut(s) 551, 1067
HaeIII GGCC 5 cut(s) 84, 339, 441, 557, 647
HapII CCGG 2 cut(s) 336, 746
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 550, 1066
Hin1II CATG 3 cut(s) 665, 1010, 1160
Hin6I GCGC 2 cut(s) 548, 1064
HinP1I GCGC 2 cut(s) 548, 1064
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HinfI GANTC 6 cut(s) 101, 452, 733, 811, 944, 950
HpaI GTTAAC 1 cut(s) 784
HpaII CCGG 2 cut(s) 336, 746
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 6 cut(s) 486, 601, 877, 949, 955, 1099
Hpy188III TCNNGA 4 cut(s) 304, 373, 737, 746
Hpy8I GTNNAC 1 cut(s) 784
Hpy99I CGWCG 2 cut(s) 412, 467
HpyAV CCTTC 7 cut(s) 42, 244, 606, 698, 884, 932, 1104
HpyCH4III ACNGT 2 cut(s) 353, 525
HpyCH4V TGCA 5 cut(s) 240, 478, 855, 1010, 1113
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 219, 464, 514, 517, 554
HpyF3I CTNAG 6 cut(s) 66, 468, 611, 767, 819, 903
Hsp92II CATG 3 cut(s) 665, 1010, 1160
HspAI GCGC 2 cut(s) 548, 1064
Kpn2I TCCGGA 1 cut(s) 745
KspAI GTTAAC 1 cut(s) 784
Kzo9I GATC 3 cut(s) 375, 614, 847
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 227, 535, 589
Lsp1109I GCAGC 5 cut(s) 411, 526, 529, 537, 720
LweI GCATC 2 cut(s) 842, 1090
MaeI CTAG 1 cut(s) 1061
MaeIII GTNAC 2 cut(s) 397, 965
MalI GATC 3 cut(s) 377, 616, 849
MbiI CCGCTC 2 cut(s) 125, 331
MboI GATC 3 cut(s) 375, 614, 847
MboII GAAGA 3 cut(s) 119, 425, 662
MfeI CAATTG 1 cut(s) 247
MhlI GDGCHC 4 cut(s) 540, 594, 1058, 1173
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 5 cut(s) 247, 308, 316, 602, 868
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 3 cut(s) 95, 446, 805
Mox20I TGGCCA 1 cut(s) 557
Mph1103I ATGCAT 1 cut(s) 1012
MroI TCCGGA 1 cut(s) 745
MroXI GAANNNNTTC 1 cut(s) 1093
MscI TGGCCA 1 cut(s) 557
MseI TTAA 1 cut(s) 783
Msp20I TGGCCA 1 cut(s) 557
MspI CCGG 2 cut(s) 336, 746
MspR9I CCNGG 3 cut(s) 419, 788, 929
MunI CAATTG 1 cut(s) 247
Mva1269I GAATGC 3 cut(s) 478, 577, 1115
MvaI CCWGG 3 cut(s) 419, 788, 929
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 168, 219, 464, 514, 517, 554
NdeII GATC 3 cut(s) 375, 614, 847
NheI GCTAGC 1 cut(s) 1060
NlaIII CATG 3 cut(s) 665, 1010, 1160
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 2 cut(s) 397, 965
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 1 cut(s) 1010
PceI AGGCCT 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 3 cut(s) 478, 577, 1115
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 3 cut(s) 733, 944, 950
PflMI CCANNNNNTGG 1 cut(s) 934
PleI GAGTC 3 cut(s) 95, 446, 805
PpsI GAGTC 3 cut(s) 95, 446, 805
Psp124BI GAGCTC 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 417, 786, 927
PspFI CCCAGC 2 cut(s) 959, 1050
PspGI CCWGG 3 cut(s) 417, 786, 927
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 3 cut(s) 358, 439, 919
PstNI CAGNNNCTG 4 cut(s) 424, 475, 523, 959
SacI GAGCTC 1 cut(s) 540
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 783
Sau3AI GATC 3 cut(s) 375, 614, 847
Sau96I GGNCC 3 cut(s) 358, 439, 919
SchI GAGTC 3 cut(s) 95, 446, 805
ScrFI CCNGG 3 cut(s) 419, 788, 929
SduI GDGCHC 4 cut(s) 540, 594, 1058, 1173
SfaNI GCATC 2 cut(s) 842, 1090
SinI GGWCC 2 cut(s) 358, 919
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
Sse9I AATT 5 cut(s) 247, 308, 316, 602, 868
SseBI AGGCCT 1 cut(s) 647
SspMI CTAG 1 cut(s) 1061
SstI GAGCTC 1 cut(s) 540
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 3 cut(s) 417, 786, 927
StyI CCWWGG 2 cut(s) 558, 642
TaaI ACNGT 2 cut(s) 353, 525
TaqI TCGA 5 cut(s) 410, 491, 617, 797, 850
TasI AATT 5 cut(s) 247, 308, 316, 602, 868
TauI GCSGC 9 cut(s) 65, 84, 263, 383, 448, 461, 511, 514, 548
TfiI GAWTC 3 cut(s) 733, 944, 950
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 2 cut(s) 397, 965
TseI GCWGC 5 cut(s) 424, 514, 517, 550, 708
Tsp45I GTSAC 2 cut(s) 397, 965
TspDTI ATGAA 2 cut(s) 584, 717
TspGWI ACGGA 2 cut(s) 44, 728
TspRI CASTG 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 934
VpaK11BI GGWCC 2 cut(s) 358, 919
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 1 cut(s) 1061
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.