Rh4AG276800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002127
Physical Location & Seq
Reverse (-)
59331170 .. 59334606
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG276800.1

Sequence Viewer

Length: 303 bp
ATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAACAGGAGGAGAAATCGAACACGCCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAGATGTATTCTCATCCAGTGACTGAGCAAGAATATATTGCCTTTTCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

7.91

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 179
AgsI TTSAA 1 cut(s) 106
AhlI ACTAGT 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 179
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 193
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 45
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 226
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 151, 266
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 151, 266
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 151, 266
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 53, 83
BstC8I GCNNGC 3 cut(s) 70, 74, 78
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 70, 74, 78
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 239
CviJI RGCY 4 cut(s) 68, 206, 235, 241
CviKI_1 RGCY 4 cut(s) 68, 206, 235, 241
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 53, 83
EarI CTCTTC 2 cut(s) 53, 83
FaiI YATR 4 cut(s) 165, 188, 212, 285
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 224
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 225
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 2 cut(s) 167, 173
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 3 cut(s) 139, 172, 193
Hpy188III TCNNGA 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 47, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 1 cut(s) 273
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 7 cut(s) 58, 86, 95, 132, 215, 255, 279
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 19, 70, 100
MluCI AATT 3 cut(s) 101, 179, 196
MnlI CCTC 4 cut(s) 51, 106, 133, 142
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 45
NdeII GATC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 167, 173
PkrI GCNGC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 3 cut(s) 101, 179, 196
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 43
TaqI TCGA 5 cut(s) 24, 86, 122, 176, 296
TasI AATT 3 cut(s) 101, 179, 196
TfiI GAWTC 2 cut(s) 167, 173
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 20, 227
TspRI CASTG 1 cut(s) 273
XapI RAATTY 1 cut(s) 179
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.