Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004940.1

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

29063 .. 30250

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004940.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgacaaaggaggtgaggctaacggagatacaaggcagaggaaggtcattagtggcggctcagccactcaaaggcggccaaatcgttctccgcgactctcctctcctcctctactccgctcttcctctcctcgctccctctcctcccccttattgcgaccactgcttcaaaaccctaaacccacaaaccgcccccatttcactctgccaatcctgctccctccacgccttctgcacccccaattgcctctccgccgcccagtcctcctcccacactcaatgggtctgccaatccctcacgaaattacgaaattgccactccccgctctccggccagcccgccgccgaccgtcaggtccaagctcgcttcttgatcgccgcttacaacctcgccgtcacttcgccgtcgagtttccaggtgctgctctctcttcagggccagccgcaggactccgccgacgctcagttcctgcattctctgatttcgaccctctgccctccgccgcagcagcaactgttttcggtggagctcacggcggcgctgttggccaaggacaagatgaatgcgtttggattgatggagcccccttcggaatttgggctgagatcgagcagagcctatggaatttatcccaaggcctcgtttttcaaccatgattgtctccccaatgcgtgccgatttgattatgttgatgaaggcagcacggagattattgtgaggatgattcacgatgttccggaggggagggagatttgcctgagctactttcctgttaaccaggcttattcgagccggcagaggactctggctgaggactatgggtttgtgtgtcaatgtgatcgatgcaaggttgaggcgagttggtctgacaatgaggaggttgaggaggaaggtggttcggctgaggttatggatgaggaccaagaccaggaaatggaaggagaatcggaatcagaagctgggagtgacattgaagcagaagctcaaggagaagctgattttccacatgcctatttctttgtgagatttatgtgtagcagaaccaattgctggggcacgctagcgcctttgccccccaaagacgatggaactccttcggatgctatggaatgcaatgtgtgtggaagtgttaagaaagatgaggagattagtggtcatggacaaaatgggctctctttggatggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

395

Amino Acids

43.24

Weight (kDa)

4.67

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccB7I	CCANNNNNTGG	2 cut(s)	934, 1050
AccBSI	CCGCTC	2 cut(s)	119, 325
AccII	CGCG	1 cut(s)	93
AccIII	TCCGGA	1 cut(s)	736
AcoI	YGGCCR	3 cut(s)	76, 331, 546
AcsI	RAATTY	2 cut(s)	593, 624
AcuI	CTGAAG	1 cut(s)	416
AfiI	CCNNNNNNNGG	6 cut(s)	71, 329, 445, 928, 934, 1050
AgsI	TTSAA	3 cut(s)	169, 649, 974
AjnI	CCWGG	3 cut(s)	414, 777, 927
AluBI	AGCT	6 cut(s)	362, 529, 762, 959, 983, 995
AluI	AGCT	6 cut(s)	362, 529, 762, 959, 983, 995
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	665
AlwNI	CAGNNNCTG	4 cut(s)	421, 469, 514, 959
Aor13HI	TCCGGA	1 cut(s)	736
AoxI	GGCC	5 cut(s)	76, 331, 436, 546, 636
ApeKI	GCWGC	4 cut(s)	421, 505, 508, 699
ApoI	RAATTY	2 cut(s)	593, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
Asp700I	GAANNNNTTC	1 cut(s)	1093
AspLEI	GCGC	2 cut(s)	541, 1066
AspS9I	GGNCC	3 cut(s)	355, 436, 919
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	1060
AvaII	GGWCC	2 cut(s)	355, 919
BaeGI	GKGCMC	1 cut(s)	1058
BalI	TGGCCA	1 cut(s)	548
BanII	GRGCYC	3 cut(s)	531, 585, 1173
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	2 cut(s)	810, 903
BbvI	GCAGC	4 cut(s)	408, 517, 520, 711
BccI	CCATC	3 cut(s)	571, 1079, 1175
BceAI	ACGGC	3 cut(s)	377, 388, 549
BciT130I	CCWGG	3 cut(s)	416, 779, 929
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	1 cut(s)	1061
BfoI	RGCGCY	2 cut(s)	542, 1067
BlpI	GCTNAGC	1 cut(s)	60
Bme1390I	CCNGG	3 cut(s)	416, 779, 929
Bme18I	GGWCC	2 cut(s)	355, 919
BmgT120I	GGNCC	3 cut(s)	355, 436, 919
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	416, 779, 929
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	833, 1090
BmtI	GCTAGC	1 cut(s)	1064
BmuI	ACTGGG	1 cut(s)	253
Bpu10I	CCTNAGC	3 cut(s)	758, 810, 903
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	969
Bsa29I	ATCGAT	1 cut(s)	841
BsaJI	CCNNGG	2 cut(s)	549, 633
BsaWI	WCCGGW	1 cut(s)	736
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 329, 445, 928, 934, 1050
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	1120
BseAI	TCCGGA	1 cut(s)	736
BseBI	CCWGG	3 cut(s)	416, 779, 929
BseCI	ATCGAT	1 cut(s)	841
BseDI	CCNNGG	2 cut(s)	549, 633
BseGI	GGATG	4 cut(s)	726, 919, 1105, 1186
BseLI	CCNNNNNNNGG	6 cut(s)	71, 329, 445, 928, 934, 1050
BseMI	GCAATG	1 cut(s)	1120
BseMII	CTCAG	6 cut(s)	74, 476, 593, 749, 801, 894
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	9 cut(s)	90, 95, 98, 119, 132, 256, 890, 899, 1157
BseSI	GKGCMC	1 cut(s)	1058
BseXI	GCAGC	4 cut(s)	408, 517, 520, 711
BseYI	CCCAGC	2 cut(s)	959, 1050
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	78, 333, 438, 548, 638
BshVI	ATCGAT	1 cut(s)	841
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	330, 737, 793
BslI	CCNNNNNNNGG	6 cut(s)	71, 329, 445, 928, 934, 1050
BsmAI	GTCTC	1 cut(s)	665
BsmI	GAATGC	3 cut(s)	472, 568, 1115
BsnI	GGCC	5 cut(s)	78, 333, 438, 548, 638
Bsp1286I	GDGCHC	4 cut(s)	531, 585, 1058, 1173
Bsp13I	TCCGGA	1 cut(s)	736
Bsp143I	GATC	3 cut(s)	372, 605, 838
Bsp1720I	GCTNAGC	1 cut(s)	60
BspANI	GGCC	5 cut(s)	78, 333, 438, 548, 638
BspCNI	CTCAG	6 cut(s)	73, 475, 594, 750, 802, 895
BspDI	ATCGAT	1 cut(s)	841
BspEI	TCCGGA	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	582
BspOI	GCTAGC	1 cut(s)	1064
BspQI	GCTCTTC	1 cut(s)	126
BsrBI	CCGCTC	2 cut(s)	119, 325
BsrDI	GCAATG	1 cut(s)	1120
BsrFI	RCCGGY	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	2 cut(s)	549, 633
BssMI	GATC	3 cut(s)	372, 605, 838
BssT1I	CCWWGG	2 cut(s)	549, 633
Bst2UI	CCWGG	3 cut(s)	416, 779, 929
Bst4CI	ACNGT	2 cut(s)	350, 516
Bst6I	CTCTTC	2 cut(s)	126, 435
BstC8I	GCNNGC	8 cut(s)	335, 339, 364, 440, 673, 794, 1058, 1062
BstDEI	CTNAG	6 cut(s)	60, 462, 602, 758, 810, 903
BstF5I	GGATG	4 cut(s)	726, 919, 1105, 1186
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	2 cut(s)	542, 1067
BstHHI	GCGC	2 cut(s)	541, 1066
BstKTI	GATC	3 cut(s)	375, 608, 841
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	372, 605, 838
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	162, 213, 508, 545
BstNI	CCWGG	3 cut(s)	416, 779, 929
BstNSI	RCATGY	1 cut(s)	1010
BstSCI	CCNGG	3 cut(s)	414, 777, 927
BstSLI	GKGCMC	1 cut(s)	1058
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	4 cut(s)	408, 517, 520, 711
Bsu15I	ATCGAT	1 cut(s)	841
BsuRI	GGCC	5 cut(s)	78, 333, 438, 548, 638
BsuTUI	ATCGAT	1 cut(s)	841
BtsCI	GGATG	4 cut(s)	726, 919, 1105, 1186
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	8 cut(s)	335, 339, 364, 440, 673, 794, 1058, 1062
CaiI	CAGNNNCTG	4 cut(s)	421, 469, 514, 959
CfoI	GCGC	2 cut(s)	541, 1066
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	3 cut(s)	355, 436, 919
ClaI	ATCGAT	1 cut(s)	841
CseI	GACGC	1 cut(s)	467
CspCI	CAANNNNNGTGG	2 cut(s)	1102, 1137
CviAII	CATG	3 cut(s)	653, 1007, 1157
DdeI	CTNAG	6 cut(s)	60, 462, 602, 758, 810, 903
DpnI	GATC	3 cut(s)	374, 607, 840
DpnII	GATC	3 cut(s)	372, 605, 838
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	3 cut(s)	76, 331, 546
Eam1104I	CTCTTC	2 cut(s)	126, 435
EarI	CTCTTC	2 cut(s)	126, 435
EciI	GGCGGA	3 cut(s)	241, 442, 489
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	549, 633
Eco147I	AGGCCT	1 cut(s)	638
Eco24I	GRGCYC	3 cut(s)	531, 585, 1173
Eco47I	GGWCC	2 cut(s)	355, 919
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	529
EcoRII	CCWGG	3 cut(s)	414, 777, 927
EcoT14I	CCWWGG	2 cut(s)	549, 633
EcoT38I	GRGCYC	3 cut(s)	531, 585, 1173
ErhI	CCWWGG	2 cut(s)	549, 633
FaeI	CATG	3 cut(s)	656, 1010, 1160
FaiI	YATR	9 cut(s)	621, 654, 687, 819, 911, 1008, 1031, 1106, 1158
FatI	CATG	3 cut(s)	652, 1006, 1156
FauI	CCCGC	2 cut(s)	330, 346
FokI	GGATG	3 cut(s)	733, 926, 1112
FriOI	GRGCYC	3 cut(s)	531, 585, 1173
FspBI	CTAG	1 cut(s)	1061
GlaI	GCGC	2 cut(s)	540, 1065
GsaI	CCCAGC	2 cut(s)	963, 1054
HaeII	RGCGCY	2 cut(s)	542, 1067
HaeIII	GGCC	5 cut(s)	78, 333, 438, 548, 638
HapII	CCGG	3 cut(s)	330, 737, 793
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	541, 1066
Hin1II	CATG	3 cut(s)	656, 1010, 1160
Hin6I	GCGC	2 cut(s)	539, 1064
HinP1I	GCGC	2 cut(s)	539, 1064
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	6 cut(s)	95, 449, 724, 802, 944, 950
HpaI	GTTAAC	1 cut(s)	775
HpaII	CCGG	3 cut(s)	330, 737, 793
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	6 cut(s)	480, 592, 868, 949, 955, 1099
Hpy188III	TCNNGA	4 cut(s)	298, 370, 728, 737
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	2 cut(s)	409, 461
HpyAV	CCTTC	7 cut(s)	36, 238, 597, 689, 884, 932, 1104
HpyCH4III	ACNGT	2 cut(s)	350, 516
HpyCH4V	TGCA	4 cut(s)	234, 472, 846, 1113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	162, 213, 508, 545
HpyF3I	CTNAG	6 cut(s)	60, 462, 602, 758, 810, 903
Hsp92II	CATG	3 cut(s)	656, 1010, 1160
HspAI	GCGC	2 cut(s)	539, 1064
Kpn2I	TCCGGA	1 cut(s)	736
KroI	GCCGGC	1 cut(s)	792
KroNI	GCCGGC	1 cut(s)	794
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	372, 605, 838
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	139, 221, 526, 580
Lsp1109I	GCAGC	4 cut(s)	408, 517, 520, 711
LweI	GCATC	2 cut(s)	833, 1090
MaeI	CTAG	1 cut(s)	1061
MaeIII	GTNAC	2 cut(s)	394, 965
MalI	GATC	3 cut(s)	374, 607, 840
MbiI	CCGCTC	2 cut(s)	119, 325
MboI	GATC	3 cut(s)	372, 605, 838
MboII	GAAGA	2 cut(s)	113, 422
MfeI	CAATTG	2 cut(s)	241, 1045
MhlI	GDGCHC	4 cut(s)	531, 585, 1058, 1173
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	6 cut(s)	241, 302, 310, 593, 624, 1045
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	3 cut(s)	89, 443, 796
Mox20I	TGGCCA	1 cut(s)	548
MroI	TCCGGA	1 cut(s)	736
MroNI	GCCGGC	1 cut(s)	792
MroXI	GAANNNNTTC	1 cut(s)	1093
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	774, 1131
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	3 cut(s)	330, 737, 793
MspR9I	CCNGG	3 cut(s)	416, 779, 929
MunI	CAATTG	2 cut(s)	241, 1045
Mva1269I	GAATGC	3 cut(s)	472, 568, 1115
MvaI	CCWGG	3 cut(s)	416, 779, 929
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	162, 213, 508, 545
NaeI	GCCGGC	1 cut(s)	794
NdeII	GATC	3 cut(s)	372, 605, 838
NgoMIV	GCCGGC	1 cut(s)	792
NheI	GCTAGC	1 cut(s)	1060
NlaIII	CATG	3 cut(s)	656, 1010, 1160
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	394, 965
NspI	RCATGY	1 cut(s)	1010
PceI	AGGCCT	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	3 cut(s)	472, 568, 1115
PdiI	GCCGGC	1 cut(s)	794
PdmI	GAANNNNTTC	1 cut(s)	1093
PfeI	GAWTC	3 cut(s)	724, 944, 950
PflMI	CCANNNNNTGG	2 cut(s)	934, 1050
PleI	GAGTC	3 cut(s)	89, 443, 796
PpsI	GAGTC	3 cut(s)	89, 443, 796
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	3 cut(s)	414, 777, 927
PspFI	CCCAGC	2 cut(s)	959, 1050
PspGI	CCWGG	3 cut(s)	414, 777, 927
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	355, 436, 919
PstNI	CAGNNNCTG	4 cut(s)	421, 469, 514, 959
SacI	GAGCTC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	774, 1131
Sau3AI	GATC	3 cut(s)	372, 605, 838
Sau96I	GGNCC	3 cut(s)	355, 436, 919
SchI	GAGTC	3 cut(s)	89, 443, 796
ScrFI	CCNGG	3 cut(s)	416, 779, 929
SduI	GDGCHC	4 cut(s)	531, 585, 1058, 1173
SfaNI	GCATC	2 cut(s)	833, 1090
SinI	GGWCC	2 cut(s)	355, 919
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	6 cut(s)	241, 302, 310, 593, 624, 1045
SseBI	AGGCCT	1 cut(s)	638
SspMI	CTAG	1 cut(s)	1061
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	414, 777, 927
StyI	CCWWGG	2 cut(s)	549, 633
TaaI	ACNGT	2 cut(s)	350, 516
TaqI	TCGA	5 cut(s)	407, 485, 608, 788, 841
TasI	AATT	6 cut(s)	241, 302, 310, 593, 624, 1045
TauI	GCSGC	8 cut(s)	59, 78, 257, 344, 380, 445, 505, 539
TfiI	GAWTC	3 cut(s)	724, 944, 950
Tru1I	TTAA	2 cut(s)	774, 1131
Tru9I	TTAA	2 cut(s)	774, 1131
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	2 cut(s)	394, 965
TseI	GCWGC	4 cut(s)	421, 505, 508, 699
Tsp45I	GTSAC	2 cut(s)	394, 965
TspDTI	ATGAA	2 cut(s)	575, 708
TspGWI	ACGGA	2 cut(s)	38, 719
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	2 cut(s)	934, 1050
VpaK11BI	GGWCC	2 cut(s)	355, 919
XapI	RAATTY	2 cut(s)	593, 624
XceI	RCATGY	1 cut(s)	1010
XmnI	GAANNNNTTC	1 cut(s)	1093
XspI	CTAG	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.