RchiOBHm_Chr4g0427831

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002127
Physical Location & Seq
Reverse (-)
52983351 .. 52983932
582 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39674

Sequence Viewer

Length: 582 bp
ATGCTCTCTTATCCTAATTGGATTGATGGAGCCCCTTCGGAATTTGGTCTGAGATCGAGCAGAGACTATGGAATTTATCGCAAGCCCTCGTTTTTCAACCATGATTGTCTCCCCCATGCGTGCCGATTTGATTATGTTGATGAAGGCAGCATAGAGATTATTGTGAGGATGATTCACGATGTTCCGGAGGGGAGGGAGATTTACCTGAGCTACTTTCATGTTAACCAGGCTTATTCGAGCCGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTATGTCAATGTGATCGGTGCAAGGTTGAGGCGAATTGGTCTGACAATGAGGATGAGCAAGGTGGTTCGGCTGAGATTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGCCATAGAAGTAGAAGATCAAGGAGAAGCTGATTTTCCACATGCCTATTTCTTTGTGAGATTTATGTGTAGTAGAACCAATTGCTGGGGAACGCTAGTCCCTTTGCCCCTGGAAGATGATGGAACTCGGAACTCCTTCGGATGCTATGGAATGCAATGTGTCTGGAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

193

Amino Acids

22.19

Weight (kDa)

4.34

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 19 - 71 3.8e-06 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 376, 492
AccIII TCCGGA 1 cut(s) 184
AcsI RAATTY 2 cut(s) 41, 72
AfiI CCNNNNNNNGG 3 cut(s) 370, 376, 492
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 3 cut(s) 225, 369, 516
AluBI AGCT 3 cut(s) 210, 401, 437
AluI AGCT 3 cut(s) 210, 401, 437
Alw26I GTCTC 2 cut(s) 57, 113
AlwNI CAGNNNCTG 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 41, 72
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 361
AvaII GGWCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 159
BccI CCATC 2 cut(s) 20, 521
BciT130I CCWGG 3 cut(s) 227, 371, 518
BcoDI GTCTC 2 cut(s) 57, 113
BfaI CTAG 1 cut(s) 503
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 227, 371, 518
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 3 cut(s) 227, 371, 518
BmsI GCATC 1 cut(s) 539
Bpu10I CCTNAGC 2 cut(s) 206, 258
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 376, 492
Bse118I RCCGGY 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 3 cut(s) 227, 371, 518
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 4 cut(s) 174, 331, 361, 554
BseLI CCNNNNNNNGG 3 cut(s) 370, 376, 492
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 4 cut(s) 41, 197, 249, 336
BseXI GCAGC 1 cut(s) 159
BseYI CCCAGC 2 cut(s) 401, 492
BsiSI CCGG 2 cut(s) 185, 241
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 370, 376, 492
BsmAI GTCTC 2 cut(s) 57, 113
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 34
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 53, 286, 424
BspCNI CTCAG 4 cut(s) 42, 198, 250, 337
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 3 cut(s) 53, 286, 424
Bst2UI CCWGG 3 cut(s) 227, 371, 518
BstC8I GCNNGC 3 cut(s) 83, 121, 242
BstDEI CTNAG 4 cut(s) 50, 206, 258, 345
BstF5I GGATG 4 cut(s) 174, 331, 361, 554
BstKTI GATC 3 cut(s) 56, 289, 427
BstMAI GTCTC 2 cut(s) 57, 113
BstMBI GATC 3 cut(s) 53, 286, 424
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 3 cut(s) 227, 371, 518
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 225, 369, 516
BstV1I GCAGC 1 cut(s) 159
BtsCI GGATG 4 cut(s) 174, 331, 361, 554
Cac8I GCNNGC 3 cut(s) 83, 121, 242
CaiI CAGNNNCTG 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 361
CviAII CATG 4 cut(s) 101, 116, 218, 449
DdeI CTNAG 4 cut(s) 50, 206, 258, 345
DpnI GATC 3 cut(s) 55, 288, 426
DpnII GATC 3 cut(s) 53, 286, 424
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 225, 369, 516
EcoT38I GRGCYC 1 cut(s) 34
FaeI CATG 4 cut(s) 104, 119, 221, 452
FaqI GGGAC 1 cut(s) 491
FatI CATG 4 cut(s) 100, 115, 217, 448
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 4 cut(s) 181, 338, 368, 561
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 503
GluI GCNGC 1 cut(s) 148
GsaI CCCAGC 2 cut(s) 405, 496
HapII CCGG 2 cut(s) 185, 241
Hin1II CATG 4 cut(s) 104, 119, 221, 452
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 4 cut(s) 172, 250, 386, 392
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 185, 241
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 7 cut(s) 40, 51, 316, 391, 397, 537, 548
Hpy188III TCNNGA 3 cut(s) 176, 185, 571
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 45, 137, 374, 553
HpyCH4V TGCA 2 cut(s) 294, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 4 cut(s) 50, 206, 258, 345
Hsp92II CATG 4 cut(s) 104, 119, 221, 452
Kpn2I TCCGGA 1 cut(s) 184
KroI GCCGGC 1 cut(s) 240
KroNI GCCGGC 1 cut(s) 242
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 53, 286, 424
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 539
MaeI CTAG 1 cut(s) 503
MalI GATC 3 cut(s) 55, 288, 426
MboI GATC 3 cut(s) 53, 286, 424
MboII GAAGA 2 cut(s) 434, 533
MfeI CAATTG 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 5 cut(s) 16, 41, 72, 307, 487
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 9 cut(s) 97, 159, 181, 186, 240, 253, 295, 316, 352
MroI TCCGGA 1 cut(s) 184
MroNI GCCGGC 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 2 cut(s) 222, 580
MspI CCGG 2 cut(s) 185, 241
MspR9I CCNGG 3 cut(s) 227, 371, 518
MunI CAATTG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 564
MvaI CCWGG 3 cut(s) 227, 371, 518
MwoI GCNNNNNNNGC 1 cut(s) 407
NaeI GCCGGC 1 cut(s) 242
NdeII GATC 3 cut(s) 53, 286, 424
NgoMIV GCCGGC 1 cut(s) 240
NlaIII CATG 4 cut(s) 104, 119, 221, 452
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 1 cut(s) 452
PctI GAATGC 1 cut(s) 564
PdiI GCCGGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 172, 386, 392
PflMI CCANNNNNTGG 2 cut(s) 376, 492
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 225, 369, 516
PspFI CCCAGC 2 cut(s) 401, 492
PspGI CCWGG 3 cut(s) 225, 369, 516
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 222, 580
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 3 cut(s) 53, 286, 424
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 227, 371, 518
SduI GDGCHC 1 cut(s) 34
SetI ASST 6 cut(s) 207, 212, 300, 337, 403, 439
SfaNI GCATC 1 cut(s) 539
SinI GGWCC 1 cut(s) 361
Sse9I AATT 5 cut(s) 16, 41, 72, 307, 487
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 3 cut(s) 225, 369, 516
TaqI TCGA 2 cut(s) 56, 236
TasI AATT 5 cut(s) 16, 41, 72, 307, 487
TfiI GAWTC 3 cut(s) 172, 386, 392
Tru1I TTAA 2 cut(s) 222, 580
Tru9I TTAA 2 cut(s) 222, 580
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 156, 206
Van91I CCANNNNNTGG 2 cut(s) 376, 492
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 2 cut(s) 41, 72
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.