Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Forward (+)

14571419 .. 14581517

Gene Structure 10099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007208

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATTTTTGCGATCGTCGTGGAGAGCAATCGCGGCGGCTGAGGAGTTGTGGGTTTGAATCGGAGATCCGAATCTCGTCGTTGTCGCCATCTCCGTCGTCGGGTTCATTGGAGAGGTCGATAAAGGTGGGTACTTTGGTCAGGGAAGGAGATGATTCGAGGGCAGATGGGTTTTTGCAATCGTCGTGGAGGGCGATCATGACGGCTGACGAGCTGTGGGGAATTGGAGGGAAGATGACGTCAGCGTTGACGTTGTCGTCGTCGGCGATGATGTTCTTCCTACGACCCCACCCGCGACGAGATCTTTGGCTTGAGGGGTCGGTTGATGGCGGCGCTTTGGTTTCTGGTTTGGAGCCCGGCATCTCTCCGTTCTGGGTGCTCGGGTCATGGTGTTGTGGAGTGCTGGGACCGGCAGAGGGGGAGGATGGGCTGTGTCCAAGCCGGGGTCCGATCATGAAGACTACTGCTCTGCTCGAAAAGAGCCCCCTTCCTCCCCGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGATGACTGTACAAGAATGTATTGCCTGTTTTGATATAGATGTTGAGGAATATGAGTTGATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTATTTCTTACATAGAAGATCGCCAAAGTCGCAACACCAACTCCAACTTAACAGCTTCAACCCCGGTTGGCAAGTCTACTGACAGTGGTGCTTTGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

33.28

Weight (kDa)

5.55

Isoelectric Point (pI)

66.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
AatII	GACGTC	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	881
AccII	CGCG	3 cut(s)	34, 295, 530
AciI	CCGC	5 cut(s)	34, 37, 293, 330, 520
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	629
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	133, 726
AfiI	CCNNNNNNNGG	3 cut(s)	101, 416, 443
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	3 cut(s)	59, 556, 864
AhlI	ACTAGT	1 cut(s)	605
AjiI	CACGTC	1 cut(s)	579
AluBI	AGCT	2 cut(s)	214, 860
AluI	AGCT	2 cut(s)	214, 860
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	1 cut(s)	629
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
AspLEI	GCGC	2 cut(s)	335, 675
AspS9I	GGNCC	3 cut(s)	407, 446, 689
AsuC2I	CCSGG	3 cut(s)	357, 443, 869
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	407, 446
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BanII	GRGCYC	2 cut(s)	357, 485
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	5 cut(s)	97, 161, 320, 419, 769
BceAI	ACGGC	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	717
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	3 cut(s)	357, 443, 869
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	1 cut(s)	606
BfoI	RGCGCY	2 cut(s)	336, 676
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	35, 38, 331, 657
BlsI	GCNGC	4 cut(s)	36, 39, 332, 658
Bme1390I	CCNGG	3 cut(s)	357, 443, 869
Bme18I	GGWCC	2 cut(s)	407, 446
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	579
BmgT120I	GGNCC	3 cut(s)	407, 446, 689
BmiI	GGNNCC	3 cut(s)	354, 408, 447
BmrFI	CCNGG	3 cut(s)	357, 443, 869
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	3 cut(s)	357, 443, 869
BsaBI	GATNNNNATC	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	442, 588, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 416, 443
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	442, 588, 867
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	101, 416, 443
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	58, 578
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	1 cut(s)	403
Bsh1236I	CGCG	3 cut(s)	34, 295, 530
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	357, 410, 442, 869
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	3 cut(s)	101, 416, 443
BsmFI	GGGAC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	691
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	3 cut(s)	357, 381, 485
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
BspACI	CCGC	5 cut(s)	34, 37, 293, 330, 520
BspANI	GGCC	1 cut(s)	691
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	3 cut(s)	34, 295, 530
BspHI	TCATGA	2 cut(s)	198, 453
BspLI	GGNNCC	3 cut(s)	354, 408, 447
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	3 cut(s)	442, 588, 867
BssMI	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	724, 890
Bst6I	CTCTTC	3 cut(s)	503, 533, 717
BstACI	GRCGYC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	520, 524, 528
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	3 cut(s)	34, 295, 530
BstH2I	RGCGCY	2 cut(s)	336, 676
BstHHI	GCGC	2 cut(s)	335, 675
BstKTI	GATC	7 cut(s)	16, 69, 198, 304, 453, 697, 826
BstMBI	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 519, 834
BstSCI	CCNGG	3 cut(s)	355, 441, 867
BstUI	CGCG	3 cut(s)	34, 295, 530
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	66, 301
BstYI	RGATCY	2 cut(s)	66, 301
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	691
BtgZI	GCGATG	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	579
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	895
Cac8I	GCNNGC	3 cut(s)	520, 524, 528
CciI	TCATGA	2 cut(s)	198, 453
CfoI	GCGC	2 cut(s)	335, 675
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	407, 446, 689
Csp6I	GTAC	2 cut(s)	132, 725
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	3 cut(s)	199, 387, 454
CviQI	GTAC	2 cut(s)	132, 725
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	7 cut(s)	15, 68, 197, 303, 452, 696, 825
DpnII	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	3 cut(s)	503, 533, 717
EarI	CTCTTC	3 cut(s)	503, 533, 717
Eco24I	GRGCYC	2 cut(s)	357, 485
Eco47I	GGWCC	2 cut(s)	407, 446
Eco88I	CYCGRG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	357, 485
FaeI	CATG	3 cut(s)	202, 390, 457
FaiI	YATR	9 cut(s)	200, 388, 455, 615, 638, 662, 752, 768, 818
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	198, 386, 453
FauI	CCCGC	2 cut(s)	300, 527
FbaI	TGATCA	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	881
Fnu4HI	GCNGC	4 cut(s)	35, 38, 331, 657
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	2 cut(s)	357, 485
Fsp4HI	GCNGC	4 cut(s)	35, 38, 331, 657
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	2 cut(s)	334, 674
GluI	GCNGC	4 cut(s)	35, 38, 331, 657
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	2 cut(s)	336, 676
HaeIII	GGCC	1 cut(s)	691
HapII	CCGG	4 cut(s)	357, 410, 442, 869
HhaI	GCGC	2 cut(s)	335, 675
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	202, 390, 457
Hin6I	GCGC	2 cut(s)	333, 673
HinP1I	GCGC	2 cut(s)	333, 673
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	5 cut(s)	59, 72, 155, 617, 623
HpaII	CCGG	4 cut(s)	357, 410, 442, 869
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	249, 882
Hpy188I	TCNGA	7 cut(s)	64, 71, 450, 589, 622, 643, 717
Hpy188III	TCNNGA	3 cut(s)	199, 454, 698
Hpy8I	GTNNAC	2 cut(s)	249, 882
Hpy99I	CGWCG	8 cut(s)	21, 82, 100, 103, 187, 262, 265, 300
HpyAV	CCTTC	3 cut(s)	140, 497, 686
HpyCH4III	ACNGT	2 cut(s)	724, 890
HpyCH4IV	ACGT	3 cut(s)	239, 251, 578
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 519, 834
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	3 cut(s)	239, 251, 578
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	202, 390, 457
HspAI	GCGC	2 cut(s)	333, 673
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	2 cut(s)	352, 806
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	3 cut(s)	239, 251, 578
MalI	GATC	7 cut(s)	15, 68, 197, 303, 452, 696, 825
MboI	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
MboII	GAAGA	7 cut(s)	244, 268, 469, 520, 550, 704, 833
MflI	RGATCY	2 cut(s)	66, 301
MhlI	GDGCHC	3 cut(s)	357, 381, 485
MluCI	AATT	4 cut(s)	222, 551, 629, 646
MmeI	TCCRAC	1 cut(s)	873
MseI	TTAA	1 cut(s)	854
MspI	CCGG	4 cut(s)	357, 410, 442, 869
MspR9I	CCNGG	3 cut(s)	357, 443, 869
MvnI	CGCG	3 cut(s)	34, 295, 530
MwoI	GCNNNNNNNGC	3 cut(s)	34, 519, 834
NciI	CCSGG	3 cut(s)	357, 443, 869
NdeII	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
NlaIII	CATG	3 cut(s)	202, 390, 457
NlaIV	GGNNCC	3 cut(s)	354, 408, 447
PagI	TCATGA	2 cut(s)	198, 453
PciSI	GCTCTTC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	4 cut(s)	92, 191, 257, 263
PfeI	GAWTC	5 cut(s)	59, 72, 155, 617, 623
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	36, 39, 332, 658
Ple19I	CGATCG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	354, 408, 447
PspPI	GGNCC	3 cut(s)	407, 446, 689
PsuI	RGATCY	2 cut(s)	66, 301
PsyI	GACNNNGTC	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	133, 726
RsaNI	GTAC	2 cut(s)	132, 725
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	854
SatI	GCNGC	4 cut(s)	35, 38, 331, 657
Sau3AI	GATC	7 cut(s)	13, 66, 195, 301, 450, 694, 823
Sau96I	GGNCC	3 cut(s)	407, 446, 689
ScrFI	CCNGG	3 cut(s)	357, 443, 869
SduI	GDGCHC	3 cut(s)	357, 381, 485
SetI	ASST	7 cut(s)	119, 129, 216, 242, 254, 581, 862
SfaNI	GCATC	1 cut(s)	369
SinI	GGWCC	2 cut(s)	407, 446
SmlI	CTYRAG	2 cut(s)	311, 902
SmoI	CTYRAG	2 cut(s)	311, 902
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	4 cut(s)	222, 551, 629, 646
SsiI	CCGC	5 cut(s)	34, 37, 293, 330, 520
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	3 cut(s)	355, 441, 867
TaaI	ACNGT	2 cut(s)	724, 890
TaiI	ACGT	3 cut(s)	242, 254, 581
TaqI	TCGA	6 cut(s)	119, 158, 474, 536, 572, 626
TasI	AATT	4 cut(s)	222, 551, 629, 646
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	3 cut(s)	37, 40, 333
TfiI	GAWTC	5 cut(s)	59, 72, 155, 617, 623
Tru1I	TTAA	1 cut(s)	854
Tru9I	TTAA	1 cut(s)	854
TscAI	CASTG	1 cut(s)	895
TseI	GCWGC	1 cut(s)	656
TspDTI	ATGAA	3 cut(s)	96, 470, 677
TspGWI	ACGGA	2 cut(s)	84, 357
TspRI	CASTG	1 cut(s)	895
Tth111I	GACNNNGTC	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	407, 446
XapI	RAATTY	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	881
XspI	CTAG	1 cut(s)	606
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.