Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

8032218 .. 8033168

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATAACACGATTGATAAAAAAATATTCTTAACTGAGATCAAATCACTTGGCCAAACTCTTGGCCCCAAACAAAAAATGAAGCAGAGGGTAAAAGGGTTTCCAGGGGTAACGGAGATAGAAGGGAGAGGACGGGCGTTAGTGGCGGCTCAGCCACTCAGGGGCGGCGAAATTGTTCTCAGAGAATCTCCGATCCTCCTCTACTCCACTCTTCCTCTCATCGCTCCTTCTCCCCAACCTTACTGCCAACACTATTTTAAAACCTTACAAAAACCCCAACCGCAAGCTCAACCCCAAGTATGTCCACTGTGTTCTCACCATGTCTTCTGTGGCCCGAATTGCCTCTCCGCCGCTCTCTCCTCCTCCCACTCCCCTTGGGCCTGCTATGCCCTCCGCCTTCTCCGTGACCCCTCTTCGCCTCTCTCCGGCCGGCCGCTCGAGCGCCAGGTCCAGGCTAGTTTCCTGATCGCCGCCTACAACCTCGCGGCGGTTTCCCCTTCCGATTTCCAGATTTTTTGTCTCTCCAGGGCCAGCCGCACGACCTCGCCGTCGCCGACACCACGGCTGCTGCCCAGTTTCTTCACTCTCTCATCTCGACACTCCGTGCTCCTCACCCAATGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

209

Amino Acids

22.83

Weight (kDa)

9.76

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
AccBSI	CCGCTC	2 cut(s)	353, 436
AccII	CGCG	1 cut(s)	485
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	3 cut(s)	52, 427, 431
AdeI	CACNNNGTG	1 cut(s)	604
AfiI	CCNNNNNNNGG	4 cut(s)	161, 425, 451, 487
AjnI	CCWGG	4 cut(s)	103, 444, 450, 524
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	7 cut(s)	52, 64, 331, 378, 427, 431, 528
ApeKI	GCWGC	2 cut(s)	565, 568
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	5 cut(s)	65, 332, 378, 448, 528
AsuHPI	GGTGA	2 cut(s)	308, 604
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	552, 555
BceAI	ACGGC	2 cut(s)	532, 578
BciT130I	CCWGG	4 cut(s)	105, 446, 452, 526
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	456, 625
BfoI	RGCGCY	1 cut(s)	445
BisI	GCNGC	9 cut(s)	147, 166, 351, 434, 471, 486, 535, 566, 569
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	9 cut(s)	148, 167, 352, 435, 472, 487, 536, 567, 570
Bme1390I	CCNGG	4 cut(s)	105, 446, 452, 526
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	5 cut(s)	65, 332, 378, 448, 528
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	4 cut(s)	105, 446, 452, 526
BmrI	ACTGGG	1 cut(s)	567
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	508
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	104, 374, 525, 560
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 425, 451, 487
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	573
BseBI	CCWGG	4 cut(s)	105, 446, 452, 526
BseDI	CCNNGG	4 cut(s)	104, 374, 525, 560
BseLI	CCNNNNNNNGG	4 cut(s)	161, 425, 451, 487
BseMII	CTCAG	4 cut(s)	27, 164, 172, 193
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	4 cut(s)	188, 349, 352, 599
BseX3I	CGGCCG	2 cut(s)	427, 431
BseXI	GCAGC	2 cut(s)	552, 555
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	2 cut(s)	430, 434
BshFI	GGCC	7 cut(s)	54, 66, 333, 380, 429, 433, 530
BsiEI	CGRYCG	2 cut(s)	430, 434
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	426, 430
BslI	CCNNNNNNNGG	4 cut(s)	161, 425, 451, 487
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	7 cut(s)	54, 66, 333, 380, 429, 433, 530
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	39, 192, 465
Bsp1720I	GCTNAGC	1 cut(s)	150
BspANI	GGCC	7 cut(s)	54, 66, 333, 380, 429, 433, 530
BspCNI	CTCAG	4 cut(s)	28, 163, 171, 192
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	187
BsrBI	CCGCTC	2 cut(s)	353, 436
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	4 cut(s)	104, 374, 525, 560
BssMI	GATC	3 cut(s)	39, 192, 465
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	4 cut(s)	105, 446, 452, 526
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	2 cut(s)	216, 418
BstC8I	GCNNGC	4 cut(s)	285, 382, 431, 532
BstDEI	CTNAG	4 cut(s)	36, 150, 158, 179
BstDSI	CCRYGG	1 cut(s)	560
BstFNI	CGCG	1 cut(s)	485
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	3 cut(s)	42, 195, 468
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	3 cut(s)	39, 192, 465
BstMCI	CGRYCG	2 cut(s)	430, 434
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 339, 386, 439
BstNI	CCWGG	4 cut(s)	105, 446, 452, 526
BstSCI	CCNGG	4 cut(s)	103, 444, 450, 524
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	552, 555
BstV2I	GAAGAC	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstZI	CGGCCG	2 cut(s)	427, 431
BsuRI	GGCC	7 cut(s)	54, 66, 333, 380, 429, 433, 530
BtgI	CCRYGG	1 cut(s)	560
BtgZI	GCGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	4 cut(s)	285, 382, 431, 532
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	5 cut(s)	65, 332, 378, 448, 528
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	1 cut(s)	320
DdeI	CTNAG	4 cut(s)	36, 150, 158, 179
DpnI	GATC	3 cut(s)	41, 194, 467
DpnII	GATC	3 cut(s)	39, 192, 465
DraI	TTTAAA	1 cut(s)	259
DraIII	CACNNNGTG	1 cut(s)	604
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	3 cut(s)	52, 427, 431
EagI	CGGCCG	2 cut(s)	427, 431
Eam1104I	CTCTTC	2 cut(s)	216, 418
EarI	CTCTTC	2 cut(s)	216, 418
EciI	GGCGGA	2 cut(s)	337, 383
EclXI	CGGCCG	2 cut(s)	427, 431
Eco130I	CCWWGG	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	448
Eco52I	CGGCCG	2 cut(s)	427, 431
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	4 cut(s)	103, 444, 450, 524
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	1 cut(s)	323
FaiI	YATR	3 cut(s)	301, 321, 387
FatI	CATG	1 cut(s)	319
Fnu4HI	GCNGC	9 cut(s)	147, 166, 351, 434, 471, 486, 535, 566, 569
FseI	GGCCGGCC	1 cut(s)	433
Fsp4HI	GCNGC	9 cut(s)	147, 166, 351, 434, 471, 486, 535, 566, 569
FspBI	CTAG	2 cut(s)	456, 625
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	9 cut(s)	147, 166, 351, 434, 471, 486, 535, 566, 569
GsuI	CTGGAG	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	445
HaeIII	GGCC	7 cut(s)	54, 66, 333, 380, 429, 433, 530
HapII	CCGG	2 cut(s)	426, 430
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	426, 430
HphI	GGTGA	2 cut(s)	308, 604
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	182, 192, 502
Hpy188III	TCNNGA	3 cut(s)	463, 508, 594
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	4 cut(s)	116, 237, 407, 507
HpyCH4III	ACNGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 339, 386, 439
HpyF3I	CTNAG	4 cut(s)	36, 150, 158, 179
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	429
KroNI	GCCGGC	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	39, 192, 465
LmnI	GCTCC	2 cut(s)	229, 612
Lsp1109I	GCAGC	2 cut(s)	552, 555
MaeI	CTAG	2 cut(s)	456, 625
MaeIII	GTNAC	2 cut(s)	109, 404
MalI	GATC	3 cut(s)	41, 194, 467
MbiI	CCGCTC	2 cut(s)	353, 436
MboI	GATC	3 cut(s)	39, 192, 465
MboII	GAAGA	4 cut(s)	203, 316, 405, 571
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	2 cut(s)	171, 337
MluNI	TGGCCA	1 cut(s)	54
Mox20I	TGGCCA	1 cut(s)	54
MroNI	GCCGGC	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	32, 258
Msp20I	TGGCCA	1 cut(s)	54
MspI	CCGG	2 cut(s)	426, 430
MspR9I	CCNGG	4 cut(s)	105, 446, 452, 526
MvaI	CCWGG	4 cut(s)	105, 446, 452, 526
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	4 cut(s)	143, 339, 386, 439
NaeI	GCCGGC	1 cut(s)	431
NdeII	GATC	3 cut(s)	39, 192, 465
NgoMIV	GCCGGC	1 cut(s)	429
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	2 cut(s)	545, 551
PdiI	GCCGGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	9 cut(s)	148, 167, 352, 435, 472, 487, 536, 567, 570
Psp6I	CCWGG	4 cut(s)	103, 444, 450, 524
PspGI	CCWGG	4 cut(s)	103, 444, 450, 524
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	5 cut(s)	65, 332, 378, 448, 528
PspXI	VCTCGAGB	1 cut(s)	437
RigI	GGCCGGCC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	32, 258
SatI	GCNGC	9 cut(s)	147, 166, 351, 434, 471, 486, 535, 566, 569
Sau3AI	GATC	3 cut(s)	39, 192, 465
Sau96I	GGNCC	5 cut(s)	65, 332, 378, 448, 528
ScrFI	CCNGG	4 cut(s)	105, 446, 452, 526
SduI	GDGCHC	1 cut(s)	609
SetI	ASST	6 cut(s)	241, 266, 289, 450, 483, 545
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	448
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	171, 337
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	2 cut(s)	456, 625
StyD4I	CCNGG	4 cut(s)	103, 444, 450, 524
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	438, 595
TasI	AATT	2 cut(s)	171, 337
TauI	GCSGC	7 cut(s)	149, 168, 353, 436, 473, 488, 537
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	32, 258
Tru9I	TTAA	2 cut(s)	32, 258
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	565, 568
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	17, 95
TspGWI	ACGGA	3 cut(s)	128, 392, 592
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	456, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.