Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

51284727 .. 51289472

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAATTTTTCCCAAGGCCTCGTTTTTCAACCATGATTGTCTCCCCAGTGCGTGCCGATTTGATTATTTTGATGAAGGCAGCACCGAGATTATTGACTCTGGCTGAGGACTATGGGTTTGTATGTCAACGTGATCGATGCAAGGTTGAGGCGAATTGGTCCGACAATGAGGAGGTTGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATAGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATAGAACTAGAAGATCAAGGAGAAGCCGATTTTCCACATGCCTACTTCTTTGATTTTGCGACAACAGATAGTAGTATCTTTTTGAAAAATTGGGTCAGGGGTCCGATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAACAGGAGGAGAAATCGAACACGTCCTCGTCTGAGGAATCTGGTGATACTAGTTTTTATGATTCAGACTCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTTTGGGGCTTGGGCCTGATCAAGAGATGTATTCTCATCCAGTGACTGAGCAAGAATATATTGCCTTTTTCGATTTAGATGTTGAGGAATATGAGTCGATGTTTGATAGAGTGCGTAGGGATTGCTCCCTTAGTGCTCGCATAGAAGCTTCAACCCCGGTTGGCAAGTCTACTGGCAGTGGCGCTTTGCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

263

Amino Acids

29.72

Weight (kDa)

4.56

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	764
AccII	CGCG	1 cut(s)	449
AciI	CCGC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	5, 548
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	30, 349, 475, 747
AhlI	ACTAGT	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	498
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	2 cut(s)	254, 743
AluI	AGCT	2 cut(s)	254, 743
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	254, 641
AoxI	GGCC	2 cut(s)	17, 608
ApeKI	GCWGC	2 cut(s)	80, 575
ApoI	RAATTY	2 cut(s)	5, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	2 cut(s)	594, 779
AspS9I	GGNCC	4 cut(s)	159, 214, 365, 608
AsuC2I	CCSGG	2 cut(s)	414, 752
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	159, 214, 365
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	733
BbvCI	CCTCAGC	2 cut(s)	105, 198
BbvI	GCAGC	2 cut(s)	92, 562
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	414, 752
BcoDI	GTCTC	1 cut(s)	46
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	2 cut(s)	272, 525
BfoI	RGCGCY	2 cut(s)	595, 780
BisI	GCNGC	2 cut(s)	81, 576
BlsI	GCNGC	2 cut(s)	82, 577
Bme1390I	CCNGG	3 cut(s)	224, 414, 752
Bme18I	GGWCC	3 cut(s)	159, 214, 365
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	4 cut(s)	159, 214, 365, 608
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	224, 414, 752
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	383
Bpu10I	CCTNAGC	2 cut(s)	105, 198
BpuMI	CCSGG	2 cut(s)	414, 752
Bsa29I	ATCGAT	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	14, 750
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	3 cut(s)	47, 635, 772
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	14, 750
BseGI	GGATG	2 cut(s)	214, 631
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	4 cut(s)	96, 189, 498, 633
BseNI	ACTGG	3 cut(s)	47, 635, 772
BseRI	GAGGAG	3 cut(s)	185, 194, 497
BseXI	GCAGC	2 cut(s)	92, 562
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	449
BshFI	GGCC	2 cut(s)	19, 610
BshVI	ATCGAT	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	414, 752
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	19, 610
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	3 cut(s)	133, 277, 613
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	19, 610
BspCNI	CTCAG	4 cut(s)	97, 190, 499, 634
BspDI	ATCGAT	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	366
BspQI	GCTCTTC	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	47, 635, 772
BssECI	CCNNGG	2 cut(s)	14, 750
BssMI	GATC	3 cut(s)	133, 277, 613
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	422, 452
BstC8I	GCNNGC	5 cut(s)	54, 439, 443, 447, 733
BstDEI	CTNAG	5 cut(s)	105, 198, 507, 642, 725
BstF5I	GGATG	2 cut(s)	214, 631
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	2 cut(s)	595, 780
BstHHI	GCGC	2 cut(s)	594, 779
BstKTI	GATC	3 cut(s)	136, 280, 616
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	3 cut(s)	133, 277, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	222, 412, 750
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	92, 562
BstV2I	GAAGAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	19, 610
BsuTUI	ATCGAT	1 cut(s)	136
BtrI	CACGTC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	214, 631
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	3 cut(s)	54, 642, 778
Cac8I	GCNNGC	5 cut(s)	54, 439, 443, 447, 733
CaiI	CAGNNNCTG	2 cut(s)	254, 641
CfoI	GCGC	2 cut(s)	594, 779
Cfr13I	GGNCC	4 cut(s)	159, 214, 365, 608
ClaI	ATCGAT	1 cut(s)	136
CviAII	CATG	2 cut(s)	34, 302
DdeI	CTNAG	5 cut(s)	105, 198, 507, 642, 725
DpnI	GATC	3 cut(s)	135, 279, 615
DpnII	GATC	3 cut(s)	133, 277, 613
Eam1104I	CTCTTC	2 cut(s)	422, 452
EarI	CTCTTC	2 cut(s)	422, 452
Eco130I	CCWWGG	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	159, 214, 365
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	37, 305
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	33, 301
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	764
Fnu4HI	GCNGC	2 cut(s)	81, 576
FokI	GGATG	2 cut(s)	221, 618
Fsp4HI	GCNGC	2 cut(s)	81, 576
FspBI	CTAG	2 cut(s)	272, 525
GlaI	GCGC	2 cut(s)	593, 778
GluI	GCNGC	2 cut(s)	81, 576
GsaI	CCCAGC	1 cut(s)	258
HaeII	RGCGCY	2 cut(s)	595, 780
HaeIII	GGCC	2 cut(s)	19, 610
HapII	CCGG	2 cut(s)	414, 752
HhaI	GCGC	2 cut(s)	594, 779
Hin1II	CATG	2 cut(s)	37, 305
Hin6I	GCGC	2 cut(s)	592, 777
HinP1I	GCGC	2 cut(s)	592, 777
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	7 cut(s)	97, 239, 245, 512, 536, 542, 689
HpaII	CCGG	2 cut(s)	414, 752
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	128, 765
Hpy188I	TCNGA	7 cut(s)	163, 244, 250, 369, 508, 541, 562
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	2 cut(s)	128, 765
HpyAV	CCTTC	4 cut(s)	70, 179, 227, 416
HpyCH4IV	ACGT	2 cut(s)	130, 497
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	5 cut(s)	105, 198, 507, 642, 725
HpySE526I	ACGT	2 cut(s)	130, 497
Hsp92II	CATG	2 cut(s)	37, 305
HspAI	GCGC	2 cut(s)	592, 777
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	133, 277, 613
LguI	GCTCTTC	1 cut(s)	422
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	2 cut(s)	92, 562
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	272, 525
MaeII	ACGT	2 cut(s)	130, 497
MaeIII	GTNAC	2 cut(s)	260, 637
MalI	GATC	3 cut(s)	135, 279, 615
MboI	GATC	3 cut(s)	133, 277, 613
MboII	GAAGA	4 cut(s)	287, 388, 439, 469
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	6 cut(s)	5, 154, 352, 470, 548, 565
MlyI	GAGTC	3 cut(s)	91, 536, 698
MmeI	TCCRAC	1 cut(s)	186
MspI	CCGG	2 cut(s)	414, 752
MspR9I	CCNGG	3 cut(s)	224, 414, 752
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	414, 752
NdeII	GATC	3 cut(s)	133, 277, 613
NlaIII	CATG	2 cut(s)	37, 305
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	2 cut(s)	260, 637
NspI	RCATGY	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	239, 245, 512, 536
PkrI	GCNGC	2 cut(s)	82, 577
PleI	GAGTC	3 cut(s)	91, 536, 697
PpsI	GAGTC	3 cut(s)	91, 536, 697
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	4 cut(s)	159, 214, 365, 608
PstNI	CAGNNNCTG	2 cut(s)	254, 641
SapI	GCTCTTC	1 cut(s)	422
SatI	GCNGC	2 cut(s)	81, 576
Sau3AI	GATC	3 cut(s)	133, 277, 613
Sau96I	GGNCC	4 cut(s)	159, 214, 365, 608
SchI	GAGTC	3 cut(s)	91, 536, 698
ScrFI	CCNGG	3 cut(s)	224, 414, 752
SduI	GDGCHC	1 cut(s)	733
SetI	ASST	8 cut(s)	133, 147, 177, 190, 204, 256, 500, 745
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	3 cut(s)	159, 214, 365
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	6 cut(s)	5, 154, 352, 470, 548, 565
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	2 cut(s)	272, 525
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	3 cut(s)	222, 412, 750
StyI	CCWWGG	1 cut(s)	14
TaiI	ACGT	2 cut(s)	133, 500
TaqI	TCGA	7 cut(s)	136, 393, 455, 491, 545, 666, 692
TasI	AATT	6 cut(s)	5, 154, 352, 470, 548, 565
TfiI	GAWTC	4 cut(s)	239, 245, 512, 536
TscAI	CASTG	3 cut(s)	54, 642, 778
TseFI	GTSAC	2 cut(s)	260, 637
TseI	GCWGC	2 cut(s)	80, 575
Tsp45I	GTSAC	2 cut(s)	260, 637
TspDTI	ATGAA	3 cut(s)	89, 389, 596
TspRI	CASTG	3 cut(s)	54, 642, 778
VpaK11BI	GGWCC	3 cut(s)	159, 214, 365
XapI	RAATTY	2 cut(s)	5, 548
XceI	RCATGY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	764
XspI	CTAG	2 cut(s)	272, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.