Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

51300433 .. 51306983

Gene Structure 6551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGAAGACATAATAACAAACACCATACATGCAACTTGAAAGTGCTGCCGTGGACACTGACTAATATCACCAGAACATCAAATAGAGAGCTGTGTAGATCATATAGAAGTAATATTGAGAATCAGGCCGCTTACATAGGTAATGATTCCTTTGACAGTTCCATTAAGATGAATCGTCACGGGTCCGATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAACAGGAGGAGAAATCGAACACTGGTAAGATCCCTTCACGGGATGGGACTTACAGTGATTGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

9.66

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	129, 256
AclWI	GGATC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	40, 292
AluBI	AGCT	2 cut(s)	91, 357
AluI	AGCT	2 cut(s)	91, 357
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BbsI	GAAGAC	2 cut(s)	13, 201
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	47, 129
BlsI	GCNGC	2 cut(s)	48, 130
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	13, 201
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	98, 321
BspACI	CCGC	2 cut(s)	129, 256
BspANI	GGCC	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	98, 321
Bst4CI	ACNGT	2 cut(s)	158, 347
Bst6I	CTCTTC	2 cut(s)	239, 269
BstC8I	GCNNGC	3 cut(s)	256, 260, 264
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	101, 324
BstMBI	GATC	2 cut(s)	98, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	13, 201
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	56, 312, 352
Cac8I	GCNNGC	3 cut(s)	256, 260, 264
Cfr13I	GGNCC	1 cut(s)	183
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	4 cut(s)	91, 128, 254, 357
CviKI_1	RGCY	4 cut(s)	91, 128, 254, 357
DpnI	GATC	2 cut(s)	100, 323
DpnII	GATC	2 cut(s)	98, 321
Eam1104I	CTCTTC	2 cut(s)	239, 269
EarI	CTCTTC	2 cut(s)	239, 269
Eco47I	GGWCC	1 cut(s)	183
FaeI	CATG	1 cut(s)	33
FaiI	YATR	6 cut(s)	12, 27, 31, 103, 105, 137
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	29
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	47, 129
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	47, 129
GluI	GCNGC	2 cut(s)	47, 129
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	1 cut(s)	33
HinfI	GANTC	3 cut(s)	121, 146, 172
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	233, 336
HpyCH4III	ACNGT	2 cut(s)	158, 347
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	98, 321
LguI	GCTCTTC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	85, 110, 244, 272, 281, 300
Lsp1109I	GCAGC	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	100, 323
MboI	GATC	2 cut(s)	98, 321
MboII	GAAGA	4 cut(s)	18, 206, 256, 286
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	2 cut(s)	237, 292
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	98, 321
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	121, 146, 172
PkrI	GCNGC	2 cut(s)	48, 130
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	47, 129
Sau3AI	GATC	2 cut(s)	98, 321
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	3 cut(s)	93, 142, 359
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	129, 256
SspI	AATATT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	158, 347
TaqI	TCGA	3 cut(s)	211, 272, 308
TasI	AATT	1 cut(s)	287
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	121, 146, 172
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	63, 319, 352
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	185, 207
TspRI	CASTG	3 cut(s)	63, 319, 352
VpaK11BI	GGWCC	1 cut(s)	183
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.