Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002127

Physical Location & Seq

Genomic Coordinates Reverse (-)

59336637 .. 59338375

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATTCACGATGTTCCGGAGGGGAGGGAGATTTGCCTGAGCTACTTTCCTGTTAACCCGGCTTATTCGAGCCGGCAGAGGACTCTGGCTGAGGACTATGGGTTTGTATGTCAACGTGATCGATGCAAGGTTGAGGCGAATTGGTCCGACAATGAGGAGGTTGAGGAGGAAGGTGGTTCGGCTGAGGTTATGGATGAGGACCAAGACCAGGAAATGGAAGGAGAATCGGAATCAGAAGCTGGGAGTGACATAGAACTAGAAGATCAAGGAGAAGCCGATTTTCCACATGCCTACTTCTTTGTGAGATTTATGTGTAGTAGAACCAATTGCTGGGGCACGCTAGCCTCTTTGCCCCTGAAAGATGATGGAACTCCTTCGGATGCTATGGAATGCAATGTGTTTGGAAGCCTTAAGAAAGATGAGGACATTAGTGGTCACGGACAAAATGGGCTCTCTTTGGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET

Protein Analysis

155

Amino Acids

17.33

Weight (kDa)

4.06

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19640 AT2G19640
fragaria_vesca	FvH4_2g26270 FvH4_4g22020
malus_domestica	MD11G1163300.v1.1 MD13G1134900.v1.1 MD16G1130700.v1.1
prunus_persica	Prupe.1G210500_v2.0.a1
pyrus_communis	pycom13g11770 pycom16g11520
rosa_chinensis	RchiOBHm_Chr4g0427831 RchiOBHm_Chr4g0427841 RchiOBHm_Chr4g0428221
rosa_laevigata	RLG00000007168 RLG00000007208
rosa_multiflora	Rmu_sc0000066.1_g000029 Rmu_sc0004940.1_g000002 Rmu_sc0009599.1_g000001
rosa_roxburghii	Rroxscaffold_5G00367650 Rroxscaffold_5G00369470 Rroxscaffold_5G00369480
rosa_rugosa	Rorug04G0223900 Rorug04G0224000 Rorug04G0224100 Rorug04G0224200 Rorug04G0224300 Rorug04G0224300
rosa_samantha	Rh4AG276800 Rh4AG276900 Rh4AG281000 Rh4BG282400 Rh4BG282500 Rh4BG282600 Rh4BG286500 Rh4CG298100 Rh4CG301600 Rh4CG302200 Rh4DG279700 Rh4DG279800 Rh4DG283600
rosa_wichuraiana	Rw0G010800 Rw0G010820 Rw0G020420 Rw4G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	214, 330
AccIII	TCCGGA	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
AflII	CTTAAG	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	42, 239
AluI	AGCT	2 cut(s)	42, 239
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	144, 199
AsuC2I	CCSGG	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	144, 199
BaeGI	GKGCMC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	453
BbvCI	CCTCAGC	2 cut(s)	90, 183
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	59
BfaI	CTAG	2 cut(s)	257, 341
BfrI	CTTAAG	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	59, 209
Bme18I	GGWCC	2 cut(s)	144, 199
BmgT120I	GGNCC	2 cut(s)	144, 199
BmrFI	CCNGG	2 cut(s)	59, 209
BmsI	GCATC	2 cut(s)	113, 370
BmtI	GCTAGC	1 cut(s)	344
Bpu10I	CCTNAGC	3 cut(s)	38, 90, 183
BpuMI	CCSGG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 214, 330
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	121
BseGI	GGATG	2 cut(s)	199, 385
BseLI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	29, 81, 174
BseRI	GAGGAG	2 cut(s)	170, 179
BseSI	GKGCMC	1 cut(s)	338
BseYI	CCCAGC	2 cut(s)	239, 330
BshVI	ATCGAT	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	17, 59, 73
BslI	CCNNNNNNNGG	3 cut(s)	208, 214, 330
BsmI	GAATGC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	338, 453
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	118, 262
BspCNI	CTCAG	3 cut(s)	30, 82, 175
BspDI	ATCGAT	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	16
BspOI	GCTAGC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssMI	GATC	2 cut(s)	118, 262
Bst2UI	CCWGG	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	74, 338, 342
BstDEI	CTNAG	3 cut(s)	38, 90, 183
BstF5I	GGATG	2 cut(s)	199, 385
BstKTI	GATC	2 cut(s)	121, 265
BstMBI	GATC	2 cut(s)	118, 262
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	57, 207
BstSLI	GKGCMC	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	121
BsuTUI	ATCGAT	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	199, 385
Cac8I	GCNNGC	3 cut(s)	74, 338, 342
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	144, 199
ClaI	ATCGAT	1 cut(s)	121
CviAII	CATG	1 cut(s)	287
DdeI	CTNAG	3 cut(s)	38, 90, 183
DpnI	GATC	2 cut(s)	120, 264
DpnII	GATC	2 cut(s)	118, 262
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	144, 199
EcoRII	CCWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	1 cut(s)	290
FaiI	YATR	7 cut(s)	99, 109, 191, 251, 288, 311, 386
FatI	CATG	1 cut(s)	286
FokI	GGATG	2 cut(s)	206, 392
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	257, 341
GsaI	CCCAGC	2 cut(s)	243, 334
HapII	CCGG	3 cut(s)	17, 59, 73
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	2 cut(s)	55, 113
HindII	GTYRAC	2 cut(s)	55, 113
HinfI	GANTC	4 cut(s)	4, 82, 224, 230
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	3 cut(s)	17, 59, 73
Hpy166II	GTNNAC	2 cut(s)	55, 113
Hpy188I	TCNGA	4 cut(s)	148, 229, 235, 379
Hpy188III	TCNNGA	2 cut(s)	8, 17
Hpy8I	GTNNAC	2 cut(s)	55, 113
HpyAV	CCTTC	3 cut(s)	164, 212, 384
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	126, 393
HpyF3I	CTNAG	3 cut(s)	38, 90, 183
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	118, 262
LweI	GCATC	2 cut(s)	113, 370
MaeI	CTAG	2 cut(s)	257, 341
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	245, 434
MalI	GATC	2 cut(s)	120, 264
MboI	GATC	2 cut(s)	118, 262
MboII	GAAGA	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	338, 453
MluCI	AATT	2 cut(s)	139, 325
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	373
MseI	TTAA	2 cut(s)	54, 411
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	3 cut(s)	17, 59, 73
MspR9I	CCNGG	2 cut(s)	59, 209
MunI	CAATTG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	209
NaeI	GCCGGC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	118, 262
NgoMIV	GCCGGC	1 cut(s)	72
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	290
NmuCI	GTSAC	2 cut(s)	245, 434
NspI	RCATGY	1 cut(s)	290
PctI	GAATGC	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	4, 224, 230
PflMI	CCANNNNNTGG	2 cut(s)	214, 330
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	2 cut(s)	239, 330
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	144, 199
PstNI	CAGNNNCTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	54, 411
Sau3AI	GATC	2 cut(s)	118, 262
Sau96I	GGNCC	2 cut(s)	144, 199
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	59, 209
SduI	GDGCHC	2 cut(s)	338, 453
SetI	ASST	7 cut(s)	44, 118, 132, 162, 175, 189, 241
SfaNI	GCATC	2 cut(s)	113, 370
SinI	GGWCC	2 cut(s)	144, 199
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	139, 325
SspMI	CTAG	2 cut(s)	257, 341
StyD4I	CCNGG	2 cut(s)	57, 207
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	68, 121
TasI	AATT	2 cut(s)	139, 325
TfiI	GAWTC	3 cut(s)	4, 224, 230
Tru1I	TTAA	2 cut(s)	54, 411
Tru9I	TTAA	2 cut(s)	54, 411
TseFI	GTSAC	2 cut(s)	245, 434
Tsp45I	GTSAC	2 cut(s)	245, 434
TspGWI	ACGGA	1 cut(s)	453
Van91I	CCANNNNNTGG	2 cut(s)	214, 330
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	144, 199
XceI	RCATGY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	373
XspI	CTAG	2 cut(s)	257, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.