Rh4CG298100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002127
Physical Location & Seq
Reverse (-)
55763110 .. 55844508
81399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG298100.1

Sequence Viewer

Length: 507 bp
ATGGATAATTTCTTATTGGCATATTATTCCCTTTTAAATTTTTGTATTCTAATTCTTCTTCCTCCTCATCGCGCCAAGTCCAAGGGTCCGATGATGAAGACTACTGCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGGTGACCGTACAAGAATGTATTGCCTTTTTTGATATAGATGTTGAGGAATATGAGTTTATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTTGTTCTTACATAGAAGATCGCCAAAGTCGCAACACCAGCTCCAACTTAACAGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.21

Weight (kDa)

6.74

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 72, 170
AciI CCGC 1 cut(s) 160
AcsI RAATTY 2 cut(s) 37, 269
AfaI GTAC 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 196
AhlI ACTAGT 1 cut(s) 245
AjiI CACGTC 1 cut(s) 219
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 37, 269
AspLEI GCGC 2 cut(s) 74, 315
AspS9I GGNCC 2 cut(s) 86, 329
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 251, 370
AvaII GGWCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 283
BciVI GTATCC 1 cut(s) 357
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 316
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 86, 329
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 81, 228
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 81, 228
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 54, 218
BseXI GCAGC 1 cut(s) 283
Bsh1236I CGCG 2 cut(s) 72, 170
BshFI GGCC 1 cut(s) 331
BsiSI CCGG 2 cut(s) 135, 356
BsnI GGCC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 334, 463
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 331
BspFNI CGCG 2 cut(s) 72, 170
BspLI GGNNCC 1 cut(s) 87
BspQI GCTCTTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 81, 228
BssMI GATC 2 cut(s) 334, 463
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 3 cut(s) 143, 173, 357
BstC8I GCNNGC 3 cut(s) 160, 164, 168
BstDEI CTNAG 1 cut(s) 504
BstEII GGTNACC 1 cut(s) 358
BstFNI CGCG 2 cut(s) 72, 170
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 74, 315
BstKTI GATC 2 cut(s) 337, 466
BstMBI GATC 2 cut(s) 334, 463
BstMWI GCNNNNNNNGC 3 cut(s) 159, 474, 483
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 133
BstUI CGCG 2 cut(s) 72, 170
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 104
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 53
BtrI CACGTC 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 160, 164, 168
CfoI GCGC 2 cut(s) 74, 315
Cfr13I GGNCC 2 cut(s) 86, 329
Csp6I GTAC 1 cut(s) 365
CviJI RGCY 5 cut(s) 158, 296, 325, 331, 486
CviKI_1 RGCY 5 cut(s) 158, 296, 325, 331, 486
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 504
DpnI GATC 2 cut(s) 336, 465
DpnII GATC 2 cut(s) 334, 463
DraI TTTAAA 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 143, 173, 357
EarI CTCTTC 3 cut(s) 143, 173, 357
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaiI YATR 8 cut(s) 22, 255, 278, 302, 392, 408, 416, 458
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 246
GlaI GCGC 2 cut(s) 73, 314
GluI GCNGC 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 1 cut(s) 331
HapII CCGG 2 cut(s) 135, 356
HhaI GCGC 2 cut(s) 74, 315
Hin6I GCGC 2 cut(s) 72, 313
HinP1I GCGC 2 cut(s) 72, 313
HinfI GANTC 3 cut(s) 257, 263, 500
HpaII CCGG 2 cut(s) 135, 356
HphI GGTGA 2 cut(s) 251, 370
Hpy188I TCNGA 4 cut(s) 90, 229, 262, 283
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 137, 326
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 474, 483
HpyF3I CTNAG 1 cut(s) 504
HpySE526I ACGT 1 cut(s) 218
HspAI GCGC 2 cut(s) 72, 313
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 334, 463
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 446, 491
LpnPI CCDG 7 cut(s) 148, 176, 222, 305, 345, 369, 496
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 246
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 336, 465
MboI GATC 2 cut(s) 334, 463
MboII GAAGA 7 cut(s) 47, 50, 109, 160, 190, 344, 473
MluCI AATT 6 cut(s) 7, 37, 51, 191, 269, 286
MnlI CCTC 8 cut(s) 72, 75, 141, 196, 223, 232, 360, 394
MseI TTAA 2 cut(s) 35, 494
MspI CCGG 2 cut(s) 135, 356
MspR9I CCNGG 1 cut(s) 135
MvnI CGCG 2 cut(s) 72, 170
MwoI GCNNNNNNNGC 3 cut(s) 159, 474, 483
NciI CCSGG 1 cut(s) 135
NdeII GATC 2 cut(s) 334, 463
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 257, 263, 500
PkrI GCNGC 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 2 cut(s) 86, 329
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 35, 494
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 334, 463
Sau96I GGNCC 2 cut(s) 86, 329
ScrFI CCNGG 1 cut(s) 135
SetI ASST 2 cut(s) 221, 488
SinI GGWCC 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 6 cut(s) 7, 37, 51, 191, 269, 286
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 114, 176, 212, 266
TasI AATT 6 cut(s) 7, 37, 51, 191, 269, 286
TfiI GAWTC 3 cut(s) 257, 263, 500
Tru1I TTAA 2 cut(s) 35, 494
Tru9I TTAA 2 cut(s) 35, 494
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 110, 317
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 2 cut(s) 37, 269
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.