Rh4BG282600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002127
Physical Location & Seq
Reverse (-)
45710621 .. 45721463
10843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG282600.1

Sequence Viewer

Length: 603 bp
ATGGATGAGGTGGCCCAATTACTTTCAGTCGGTTGTCCCGTAATAATCATTCTGCTCTCCATCTTTCGTCTTCCGATCTCGCTCCCGAATCAAATTCTAATTCTTCTTCCTCCTCATCGCGCCAAGTCCAAGGGTCCGATGATGAAGACTACTTCTCTGCTCGAAAAGAACCCCCTTCCTCCCGGTGCGAAAGCGAAGAGCAAAGCCCGCCAGCACGCGAAATCGAAGAGAAAGGAGAAATTGAAAAAGGAGGAGAAATCGAACACGTCCTCGTCCGAGGAAACTGGTGATACTAGTTTTTATGATTCAGAATCGAAATTCTTTATGTCCGAGAATTATTTGGCTGCTATGAACAAAGAGCGCCTTCTGGGGCTTGGGCCTGATCAAGAAATGTATCCTCTTCCGGTGACTGTACAAGAATGTATTGCCTTTTTTGATATAGATGTTGAGGAATATGAGTTTATGGCAGATAGAGTGCGTAAGGATTGCTCCCTTATTTCTTACATAGAAGATCGCCAAAGTCGCAACACCAACTCCAACTTAACAGGTGAGGTTGCCCTTTCCTTTGTAGTTGAGTGCATTGCTTTTGTGGTTTGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.56

Weight (kDa)

6.19

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 120, 218
AciI CCGC 1 cut(s) 208
AcsI RAATTY 2 cut(s) 93, 317
AfaI GTAC 1 cut(s) 414
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 293
AjiI CACGTC 1 cut(s) 267
AoxI GGCC 3 cut(s) 12, 377, 596
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 2 cut(s) 93, 317
AspLEI GCGC 2 cut(s) 122, 363
AspS9I GGNCC 3 cut(s) 13, 134, 377
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 3 cut(s) 299, 418, 560
AvaII GGWCC 1 cut(s) 134
BbsI GAAGAC 2 cut(s) 62, 152
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 405
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 183
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 364
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 3 cut(s) 13, 134, 377
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 62, 152
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 129, 276
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 129, 276
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 102, 266
BseXI GCAGC 1 cut(s) 331
Bsh1236I CGCG 2 cut(s) 120, 218
BshFI GGCC 3 cut(s) 14, 379, 598
BsiSI CCGG 2 cut(s) 183, 404
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 3 cut(s) 14, 379, 598
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 75, 382, 511
BspACI CCGC 1 cut(s) 208
BspANI GGCC 3 cut(s) 14, 379, 598
BspFNI CGCG 2 cut(s) 120, 218
BspLI GGNNCC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 579
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 129, 276
BssMI GATC 3 cut(s) 75, 382, 511
BssT1I CCWWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 3 cut(s) 191, 221, 405
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 3 cut(s) 208, 212, 216
BstDEI CTNAG 1 cut(s) 600
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 120, 218
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 2 cut(s) 122, 363
BstKTI GATC 3 cut(s) 78, 385, 514
BstMBI GATC 3 cut(s) 75, 382, 511
BstMWI GCNNNNNNNGC 2 cut(s) 207, 522
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 2 cut(s) 120, 218
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 2 cut(s) 62, 152
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 3 cut(s) 14, 379, 598
BtgZI GCGATG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 3 cut(s) 208, 212, 216
CfoI GCGC 2 cut(s) 122, 363
Cfr13I GGNCC 3 cut(s) 13, 134, 377
Csp6I GTAC 1 cut(s) 413
CviJI RGCY 6 cut(s) 14, 206, 344, 373, 379, 598
CviKI_1 RGCY 6 cut(s) 14, 206, 344, 373, 379, 598
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 1 cut(s) 600
DpnI GATC 3 cut(s) 77, 384, 513
DpnII GATC 3 cut(s) 75, 382, 511
Eam1104I CTCTTC 3 cut(s) 191, 221, 405
EarI CTCTTC 3 cut(s) 191, 221, 405
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaiI YATR 7 cut(s) 303, 326, 350, 440, 456, 464, 506
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 1 cut(s) 21
FauI CCCGC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 121, 362
GluI GCNGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 3 cut(s) 14, 379, 598
HapII CCGG 2 cut(s) 183, 404
HhaI GCGC 2 cut(s) 122, 363
Hin6I GCGC 2 cut(s) 120, 361
HinP1I GCGC 2 cut(s) 120, 361
HinfI GANTC 3 cut(s) 88, 305, 311
HpaII CCGG 2 cut(s) 183, 404
HphI GGTGA 3 cut(s) 299, 418, 560
Hpy188I TCNGA 5 cut(s) 75, 138, 277, 310, 331
Hpy188III TCNNGA 2 cut(s) 85, 386
HpyAV CCTTC 2 cut(s) 185, 374
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 522
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 1 cut(s) 266
HspAI GCGC 2 cut(s) 120, 361
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 75, 382, 511
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 87, 494
LpnPI CCDG 7 cut(s) 196, 224, 270, 353, 393, 417, 531
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 77, 384, 513
MboI GATC 3 cut(s) 75, 382, 511
MboII GAAGA 8 cut(s) 62, 95, 98, 157, 208, 238, 392, 521
MluCI AATT 6 cut(s) 17, 93, 99, 239, 317, 334
MmeI TCCRAC 1 cut(s) 561
MnlI CCTC 9 cut(s) 120, 123, 189, 244, 271, 280, 408, 442, 544
MseI TTAA 1 cut(s) 542
MspI CCGG 2 cut(s) 183, 404
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 2 cut(s) 120, 218
MwoI GCNNNNNNNGC 2 cut(s) 207, 522
NciI CCSGG 1 cut(s) 183
NdeII GATC 3 cut(s) 75, 382, 511
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 3 cut(s) 88, 305, 311
PkrI GCNGC 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 3 cut(s) 13, 134, 377
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 75, 382, 511
Sau96I GGNCC 3 cut(s) 13, 134, 377
ScrFI CCNGG 1 cut(s) 183
SetI ASST 4 cut(s) 12, 269, 550, 555
SinI GGWCC 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 6 cut(s) 17, 93, 99, 239, 317, 334
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 269
TaqI TCGA 4 cut(s) 162, 224, 260, 314
TasI AATT 6 cut(s) 17, 93, 99, 239, 317, 334
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 3 cut(s) 88, 305, 311
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 158, 365
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 2 cut(s) 93, 317
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.