MD11G1163300.v1.1

methyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002127
Physical Location & Seq
Forward (+)
16546813 .. 16547100
288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1163300.v1.1.491

Sequence Viewer

Length: 288 bp
ATGAAGAGGGTGAGGAAGAAGCAAAGGGTATGGATGAGGACCAAGACTAGAAAAATGGAGTCATCCTCGGAATCAGAACCCGAATCCGAGATTGACATTGAAGAAGCCAAAGCCAAAGCCCAAGAGGAAGCCGATTTCCCACACGCGTATTTCTTTGTCAGGTTCATGTGCAACATAACTAATTGCTGGGGCACCCTGGCCCCATTGCCCCCGAAAGATGACGGAAGTCCTTCGAATGTCATGGAGTGCAATGTCTATGGCAGCCTTAAGAAGAACGAGCATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

7.71

Isoelectric Point (pI)

74.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 39, 199
AsuHPI GGTGA 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 197
BfaI CTAG 1 cut(s) 48
BfrI CTTAAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 39, 199
BmiI GGNNCC 2 cut(s) 193, 201
BmrFI CCNGG 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 50, 82
Bpu14I TTCGAA 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 66, 195
Bse3DI GCAATG 2 cut(s) 203, 256
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 66, 195
BseGI GGATG 2 cut(s) 39, 62
BseMI GCAATG 2 cut(s) 203, 256
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 200
BshNI GGYRCC 1 cut(s) 191
BsnI GGCC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 194
BspANI GGCC 1 cut(s) 200
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 193, 201
BspT104I TTCGAA 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 191
BspTI CTTAAG 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 203, 256
BssECI CCNNGG 2 cut(s) 66, 195
Bst2UI CCWGG 1 cut(s) 197
BstAFI CTTAAG 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 233
BstF5I GGATG 2 cut(s) 39, 62
BstFNI CGCG 1 cut(s) 146
BstNI CCWGG 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 194
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 2 cut(s) 39, 62
Cfr13I GGNCC 2 cut(s) 39, 199
CviAII CATG 2 cut(s) 166, 241
CviJI RGCY 7 cut(s) 107, 113, 119, 131, 200, 264, 285
CviKI_1 RGCY 7 cut(s) 107, 113, 119, 131, 200, 264, 285
Eco47I GGWCC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 169, 244
FaiI YATR 6 cut(s) 31, 167, 176, 242, 258, 282
FatI CATG 2 cut(s) 165, 240
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 46, 49
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 2 cut(s) 169, 244
HinfI GANTC 3 cut(s) 59, 71, 83
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 70, 76, 88
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 171, 249
Hsp92II CATG 2 cut(s) 169, 244
LpnPI CCDG 4 cut(s) 145, 172, 182, 209
Lsp1109I GCAGC 1 cut(s) 273
MaeI CTAG 1 cut(s) 48
MboII GAAGA 4 cut(s) 16, 28, 113, 283
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 1 cut(s) 181
MluI ACGCGT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 6, 30, 76, 118
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 267
MspCI CTTAAG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 146
NlaIII CATG 2 cut(s) 169, 244
NlaIV GGNNCC 2 cut(s) 193, 201
NspV TTCGAA 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 71, 83
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 193, 201
PspPI GGNCC 2 cut(s) 39, 199
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 39, 199
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 194
SetI ASST 2 cut(s) 164, 287
SfuI TTCGAA 1 cut(s) 233
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 233
TasI AATT 1 cut(s) 181
TfiI GAWTC 2 cut(s) 71, 83
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 17, 154
TspGWI ACGGA 1 cut(s) 237
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.